Wall clock time and date at job start Tue Mar 31 2020 12:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86791 * 120.00182 * 2 1 4 4 H 1.48499 * 109.47345 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47278 * 300.00060 * 3 2 1 6 6 H 1.48502 * 109.47366 * 60.00173 * 3 2 1 7 7 C 1.37875 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00338 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00183 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.53502 * 59.90290 * 9 7 2 11 11 C 1.53123 * 109.50254 * 299.80601 * 9 7 2 12 12 C 1.53124 * 109.15980 * 182.40170 * 11 9 7 13 13 C 1.53041 * 109.27510 * 57.65355 * 12 11 9 14 14 N 1.46842 * 109.52407 * 300.81747 * 13 12 11 15 15 C 1.39055 * 111.00025 * 185.84429 * 14 13 12 16 16 N 1.32409 * 119.58976 * 235.79482 * 15 14 13 17 17 C 1.31818 * 121.77073 * 179.97438 * 16 15 14 18 18 C 1.39132 * 120.73600 * 0.02562 * 17 16 15 19 19 C 1.48432 * 120.44336 * 179.97438 * 18 17 16 20 20 N 1.34054 * 126.67306 * 180.02562 * 19 18 17 21 21 N 1.28992 * 107.26360 * 179.97438 * 20 19 18 22 22 N 1.28722 * 108.94957 * 0.02562 * 21 20 19 23 23 H 0.96994 * 125.34286 * 180.02562 * 22 21 20 24 24 N 1.28879 * 109.32073 * 359.74623 * 22 21 20 25 25 C 1.39925 * 119.11315 * 359.97438 * 18 17 16 26 26 C 1.38259 * 118.38110 * 359.73450 * 25 18 17 27 27 F 1.35091 * 120.40940 * 180.28119 * 26 25 18 28 28 C 1.46846 * 111.19700 * 61.74724 * 14 13 12 29 29 H 0.97002 * 119.99441 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.52181 * 302.30649 * 11 9 7 31 31 H 1.08997 * 109.52376 * 62.49755 * 11 9 7 32 32 H 1.08997 * 109.50272 * 297.71554 * 12 11 9 33 33 H 1.08999 * 109.50255 * 177.59425 * 12 11 9 34 34 H 1.09006 * 109.45562 * 180.80294 * 13 12 11 35 35 H 1.08991 * 109.45245 * 60.83364 * 13 12 11 36 36 H 1.08004 * 119.63474 * 179.97438 * 17 16 15 37 37 H 1.08001 * 120.80752 * 180.02562 * 25 18 17 38 38 H 1.08999 * 109.46089 * 178.24127 * 28 14 13 39 39 H 1.08994 * 109.45639 * 58.26845 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6223 -2.5571 -0.8891 11 6 0.3746 -2.5835 1.2522 12 6 -0.3411 -3.9370 1.2747 13 6 0.6989 -5.0591 1.2371 14 7 1.5110 -4.9348 0.0201 15 6 2.3790 -6.0132 -0.1120 16 7 3.6793 -5.7947 -0.2338 17 6 4.5404 -6.7846 -0.3611 18 6 4.1074 -8.1068 -0.3723 19 6 5.0827 -9.2164 -0.5165 20 7 4.8054 -10.5277 -0.5434 21 7 5.9250 -11.1530 -0.6824 22 7 6.8800 -10.2920 -0.7421 23 1 7.8208 -10.5039 -0.8460 24 7 6.3895 -9.1039 -0.6480 25 6 2.7402 -8.3765 -0.2458 26 6 1.8701 -7.3109 -0.1084 27 9 0.5426 -7.5245 0.0224 28 6 2.2448 -3.6630 -0.0011 29 1 -0.4849 0.8401 0.0004 30 1 0.9987 -2.4866 2.1406 31 1 -0.3634 -1.7815 1.2351 32 1 -0.9948 -4.0174 0.4063 33 1 -0.9336 -4.0202 2.1859 34 1 0.1920 -6.0241 1.2387 35 1 1.3435 -4.9860 2.1130 36 1 5.5938 -6.5669 -0.4585 37 1 2.3741 -9.3926 -0.2507 38 1 2.8608 -3.6141 -0.8990 39 1 2.8821 -3.5968 0.8806 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592673731.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:07 Heat of formation + Delta-G solvation = 126.465913 kcal Electronic energy + Delta-G solvation = -25981.584608 eV Core-core repulsion = 22070.015053 eV Total energy + Delta-G solvation = -3911.569555 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.130 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.91925 -44.72085 -40.48812 -38.12890 -34.92113 -34.28165 -33.45467 -32.22202 -31.79469 -30.06171 -29.33362 -25.38578 -25.16494 -24.94689 -23.68767 -22.77585 -21.72725 -21.37758 -19.56993 -18.79858 -17.68318 -17.41413 -17.30108 -17.12404 -16.06332 -15.79789 -15.34023 -14.62020 -14.41446 -14.34583 -14.27647 -13.94415 -13.50924 -13.18374 -12.86670 -12.75329 -12.60533 -12.41448 -12.33198 -11.81930 -11.67471 -11.40936 -11.39104 -10.97588 -10.83241 -10.68486 -10.18491 -9.92148 -9.87919 -9.73616 -9.58728 -9.39904 -9.15766 -8.73037 -8.32985 -7.79264 -6.00271 -4.06068 0.37290 0.88662 0.98211 1.94987 2.07052 3.29872 3.31178 3.38149 3.42081 3.49256 3.71234 3.82673 4.31042 4.37719 4.48069 4.65774 4.78754 5.03515 5.19943 5.30322 5.42181 5.54681 5.55841 5.60481 5.76005 5.89254 6.03868 6.07844 6.27191 6.37551 6.44693 6.55048 6.67763 6.85665 6.93925 7.19238 7.31579 7.53883 7.72869 7.85050 7.88070 7.99453 8.11666 8.42312 8.97633 9.58550 11.06189 Molecular weight = 318.13amu Principal moments of inertia in cm(-1) A = 0.021451 B = 0.003030 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.012268 B = 9239.077602 C =10385.923656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.512 4.512 8 H 0.057 0.943 9 C 0.050 3.950 10 H 0.035 0.965 11 C -0.115 4.115 12 C -0.117 4.117 13 C 0.053 3.947 14 N -0.467 5.467 15 C 0.327 3.673 16 N -0.491 5.491 17 C 0.171 3.829 18 C -0.100 4.100 19 C 0.237 3.763 20 N -0.271 5.271 21 N -0.050 5.050 22 N -0.227 5.227 23 H 0.476 0.524 24 N -0.294 5.294 25 C -0.044 4.044 26 C 0.020 3.980 27 F -0.120 7.120 28 C 0.076 3.924 29 H 0.259 0.741 30 H 0.034 0.966 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.083 0.917 35 H 0.043 0.957 36 H 0.170 0.830 37 H 0.157 0.843 38 H 0.076 0.924 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.530 -19.242 0.822 21.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.075 0.925 9 C 0.031 3.969 10 H 0.053 0.947 11 C -0.153 4.153 12 C -0.155 4.155 13 C -0.072 4.072 14 N -0.181 5.181 15 C 0.091 3.909 16 N -0.205 5.205 17 C 0.009 3.991 18 C -0.108 4.108 19 C -0.043 4.043 20 N -0.144 5.144 21 N -0.045 5.045 22 N -0.073 5.073 23 H 0.330 0.670 24 N -0.146 5.146 25 C -0.072 4.072 26 C -0.005 4.005 27 F -0.098 7.098 28 C -0.049 4.049 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.113 0.887 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.062 0.938 36 H 0.187 0.813 37 H 0.174 0.826 38 H 0.094 0.906 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 9.391 -18.795 0.416 21.015 hybrid contribution 0.914 0.268 0.393 1.030 sum 10.305 -18.527 0.808 21.215 Atomic orbital electron populations 1.69897 1.05860 1.26320 1.50674 1.24931 0.94843 0.99030 0.95050 0.86541 0.80192 0.83780 0.77520 1.19747 1.21060 1.21100 1.21120 0.93008 0.90252 1.50684 0.92459 1.18782 0.92626 0.90501 0.94966 0.94678 1.21734 1.00234 0.94652 0.98671 1.21721 0.96848 0.95850 1.01113 1.22449 0.95723 1.01570 0.87413 1.58994 1.20759 1.02725 1.35611 1.20517 0.88709 0.89985 0.91683 1.68016 1.00863 1.34669 1.16934 1.22772 0.99903 0.86024 0.90412 1.17784 0.90110 0.90370 1.12534 1.23295 0.88406 0.91739 1.00846 1.76096 1.16719 1.03670 1.17955 1.78901 0.91372 1.19663 1.14541 1.47712 1.12941 1.00952 1.45728 0.67005 1.74946 1.11019 1.06475 1.22153 1.21365 0.91239 0.99772 0.94823 1.17860 0.79017 0.92768 1.10903 1.91462 1.29768 1.95145 1.93443 1.22410 0.96089 0.84957 1.01422 0.93058 0.94701 0.88658 0.91603 0.92423 0.89908 0.93847 0.81270 0.82554 0.90575 0.93853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.88 11.36 55.43 0.63 -24.25 16 2 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.51 -13.76 8.56 -34.44 -0.29 -14.06 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.05 1.23 2.26 -91.69 -0.21 1.02 16 10 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 11 C -0.11 -2.61 5.03 -26.60 -0.13 -2.75 16 12 C -0.12 -2.19 6.09 -26.65 -0.16 -2.35 16 13 C 0.05 0.92 5.15 -3.83 -0.02 0.90 16 14 N -0.47 -8.79 4.63 -173.14 -0.80 -9.59 16 15 C 0.33 5.46 6.42 -154.86 -0.99 4.47 16 16 N -0.49 -7.89 8.66 -12.11 -0.10 -7.99 16 17 C 0.17 2.19 10.85 -17.23 -0.19 2.00 16 18 C -0.10 -1.21 5.89 -104.73 -0.62 -1.83 16 19 C 0.24 2.68 7.95 -156.30 -1.24 1.44 16 20 N -0.27 -3.15 12.30 32.15 0.40 -2.76 16 21 N -0.05 -0.47 13.47 60.35 0.81 0.34 16 22 N -0.23 -1.56 7.90 60.35 0.48 -1.08 16 23 H 0.48 0.89 8.96 -340.37 -3.05 -2.16 16 24 N -0.29 -2.81 12.09 32.17 0.39 -2.42 16 25 C -0.04 -0.54 9.81 -38.94 -0.38 -0.92 16 26 C 0.02 0.28 6.97 -39.14 -0.27 0.01 16 27 F -0.12 -1.77 14.73 2.25 0.03 -1.73 16 28 C 0.08 1.62 3.87 -3.83 -0.01 1.60 16 29 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.10 2.43 6.17 -51.93 -0.32 2.11 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.08 1.29 5.50 -51.93 -0.29 1.00 16 35 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.17 1.79 7.88 -52.48 -0.41 1.37 16 37 H 0.16 1.63 7.96 -52.49 -0.42 1.21 16 38 H 0.08 1.66 7.70 -51.93 -0.40 1.26 16 39 H 0.04 0.93 8.11 -51.93 -0.42 0.51 16 LS Contribution 329.21 15.07 4.96 4.96 Total: -1.00 -30.48 329.21 -9.82 -40.30 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -6.96 Total: -2.91 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -4.62 Total: -8.85 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: 1.80 Total: -47.75 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.03 Total: -1.73 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.48 -9.82 -40.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592673731.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.762 kcal (2) G-P(sol) polarization free energy of solvation -30.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds