Wall clock time and date at job start Tue Mar 31 2020 12:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86791 * 120.00182 * 2 1 4 4 H 1.48499 * 109.47345 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47278 * 300.00060 * 3 2 1 6 6 H 1.48502 * 109.47366 * 60.00173 * 3 2 1 7 7 C 1.37875 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00338 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00183 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.53502 * 59.90290 * 9 7 2 11 11 C 1.53123 * 109.50254 * 299.80601 * 9 7 2 12 12 C 1.53124 * 109.15980 * 182.40170 * 11 9 7 13 13 C 1.53041 * 109.27510 * 57.65355 * 12 11 9 14 14 N 1.46842 * 109.52407 * 300.81747 * 13 12 11 15 15 C 1.39055 * 111.00025 * 185.84429 * 14 13 12 16 16 N 1.32409 * 119.58976 * 235.79482 * 15 14 13 17 17 C 1.31818 * 121.77073 * 179.97438 * 16 15 14 18 18 C 1.39132 * 120.73600 * 0.02562 * 17 16 15 19 19 C 1.48432 * 120.44336 * 179.97438 * 18 17 16 20 20 N 1.34054 * 126.67306 * 180.02562 * 19 18 17 21 21 N 1.28992 * 107.26360 * 179.97438 * 20 19 18 22 22 N 1.28722 * 108.94957 * 0.02562 * 21 20 19 23 23 H 0.96994 * 125.34286 * 180.02562 * 22 21 20 24 24 N 1.28879 * 109.32073 * 359.74623 * 22 21 20 25 25 C 1.39925 * 119.11315 * 359.97438 * 18 17 16 26 26 C 1.38259 * 118.38110 * 359.73450 * 25 18 17 27 27 F 1.35091 * 120.40940 * 180.28119 * 26 25 18 28 28 C 1.46846 * 111.19700 * 61.74724 * 14 13 12 29 29 H 0.97002 * 119.99441 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.52181 * 302.30649 * 11 9 7 31 31 H 1.08997 * 109.52376 * 62.49755 * 11 9 7 32 32 H 1.08997 * 109.50272 * 297.71554 * 12 11 9 33 33 H 1.08999 * 109.50255 * 177.59425 * 12 11 9 34 34 H 1.09006 * 109.45562 * 180.80294 * 13 12 11 35 35 H 1.08991 * 109.45245 * 60.83364 * 13 12 11 36 36 H 1.08004 * 119.63474 * 179.97438 * 17 16 15 37 37 H 1.08001 * 120.80752 * 180.02562 * 25 18 17 38 38 H 1.08999 * 109.46089 * 178.24127 * 28 14 13 39 39 H 1.08994 * 109.45639 * 58.26845 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6223 -2.5571 -0.8891 11 6 0.3746 -2.5835 1.2522 12 6 -0.3411 -3.9370 1.2747 13 6 0.6989 -5.0591 1.2371 14 7 1.5110 -4.9348 0.0201 15 6 2.3790 -6.0132 -0.1120 16 7 3.6793 -5.7947 -0.2338 17 6 4.5404 -6.7846 -0.3611 18 6 4.1074 -8.1068 -0.3723 19 6 5.0827 -9.2164 -0.5165 20 7 4.8054 -10.5277 -0.5434 21 7 5.9250 -11.1530 -0.6824 22 7 6.8800 -10.2920 -0.7421 23 1 7.8208 -10.5039 -0.8460 24 7 6.3895 -9.1039 -0.6480 25 6 2.7402 -8.3765 -0.2458 26 6 1.8701 -7.3109 -0.1084 27 9 0.5426 -7.5245 0.0224 28 6 2.2448 -3.6630 -0.0011 29 1 -0.4849 0.8401 0.0004 30 1 0.9987 -2.4866 2.1406 31 1 -0.3634 -1.7815 1.2351 32 1 -0.9948 -4.0174 0.4063 33 1 -0.9336 -4.0202 2.1859 34 1 0.1920 -6.0241 1.2387 35 1 1.3435 -4.9860 2.1130 36 1 5.5938 -6.5669 -0.4585 37 1 2.3741 -9.3926 -0.2507 38 1 2.8608 -3.6141 -0.8990 39 1 2.8821 -3.5968 0.8806 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592673731.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:06 Heat of formation + Delta-G solvation = 106.808860 kcal Electronic energy + Delta-G solvation = -25982.437002 eV Core-core repulsion = 22070.015053 eV Total energy + Delta-G solvation = -3912.421949 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.130 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.05254 -45.48690 -41.69354 -39.56106 -36.12868 -35.37635 -34.72259 -33.48784 -33.15324 -31.79546 -30.53096 -27.12549 -26.35095 -25.98419 -24.78869 -24.06812 -23.05798 -22.76043 -20.57554 -20.26365 -19.01689 -18.50526 -18.29726 -18.16668 -17.84134 -16.95465 -16.61025 -16.30313 -15.78131 -15.57236 -15.46927 -15.07082 -14.99284 -14.49988 -14.34948 -14.19762 -13.95730 -13.80442 -13.36417 -13.32074 -12.86138 -12.69810 -12.52134 -12.51597 -12.28688 -12.20237 -11.86371 -11.79723 -11.48394 -11.02855 -10.90784 -10.81353 -10.76573 -10.50899 -10.36733 -9.05952 -8.07762 -6.21102 -0.63487 -0.07871 0.13187 1.13844 1.38960 1.42147 1.44250 1.55647 2.26221 2.45610 2.47535 2.61721 2.86662 3.20055 3.25456 3.30025 3.68690 3.73614 3.96473 4.11203 4.14313 4.33788 4.36098 4.51557 4.52197 4.58277 4.64870 4.79706 4.83477 4.90753 5.00462 5.10827 5.23704 5.28380 5.47934 5.61151 5.64657 5.68939 5.98551 6.07980 6.14354 6.38410 6.74008 6.89679 7.08882 7.46659 8.97596 Molecular weight = 318.13amu Principal moments of inertia in cm(-1) A = 0.021451 B = 0.003030 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.012268 B = 9239.077602 C =10385.923656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.016 3.984 3 Si 0.955 3.045 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.532 4.532 8 H 0.052 0.948 9 C 0.049 3.951 10 H -0.002 1.002 11 C -0.107 4.107 12 C -0.109 4.109 13 C 0.058 3.942 14 N -0.483 5.483 15 C 0.302 3.698 16 N -0.515 5.515 17 C 0.171 3.829 18 C -0.082 4.082 19 C 0.223 3.777 20 N -0.290 5.290 21 N -0.052 5.052 22 N -0.196 5.196 23 H 0.496 0.504 24 N -0.289 5.289 25 C -0.031 4.031 26 C 0.019 3.981 27 F -0.122 7.122 28 C 0.100 3.900 29 H 0.261 0.739 30 H 0.029 0.971 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.046 0.954 36 H 0.192 0.808 37 H 0.179 0.821 38 H 0.062 0.938 39 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.279 -21.246 1.152 24.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.183 4.183 3 Si 0.780 3.220 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.205 1.205 7 C -0.571 4.571 8 H 0.071 0.929 9 C 0.030 3.970 10 H 0.016 0.984 11 C -0.145 4.145 12 C -0.147 4.147 13 C -0.067 4.067 14 N -0.198 5.198 15 C 0.068 3.932 16 N -0.228 5.228 17 C 0.009 3.991 18 C -0.089 4.089 19 C -0.057 4.057 20 N -0.163 5.163 21 N -0.047 5.047 22 N -0.048 5.048 23 H 0.355 0.645 24 N -0.142 5.142 25 C -0.059 4.059 26 C -0.006 4.006 27 F -0.101 7.101 28 C -0.026 4.026 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.122 0.878 35 H 0.065 0.935 36 H 0.208 0.792 37 H 0.196 0.804 38 H 0.081 0.919 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 11.172 -20.843 0.742 23.660 hybrid contribution 0.556 0.720 0.250 0.943 sum 11.727 -20.123 0.992 23.312 Atomic orbital electron populations 1.70033 1.07106 1.27071 1.51191 1.25689 0.95668 1.02247 0.94730 0.85557 0.79120 0.79722 0.77566 1.19169 1.20765 1.20513 1.21457 0.93033 0.91787 1.50808 0.92931 1.18687 0.92926 0.91263 0.94121 0.98395 1.21522 0.99297 0.96261 0.97446 1.21613 0.97037 0.93965 1.02060 1.22441 0.95263 1.01717 0.87263 1.58978 1.21585 1.02217 1.36995 1.20456 0.88958 0.90020 0.93806 1.67940 1.01082 1.36296 1.17529 1.23076 1.00329 0.85844 0.89841 1.17828 0.90321 0.90436 1.10320 1.23104 0.88786 0.91532 1.02323 1.76085 1.17743 1.03721 1.18701 1.78867 0.91402 1.19696 1.14743 1.47790 1.13770 0.99885 1.43312 0.64462 1.74915 1.10362 1.07399 1.21503 1.21551 0.90944 1.00063 0.93300 1.17828 0.79166 0.92366 1.11228 1.91450 1.30007 1.95070 1.93524 1.21889 0.94856 0.85555 1.00317 0.93004 0.95173 0.91723 0.92566 0.89671 0.87756 0.93529 0.79167 0.80394 0.91911 0.94592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.80 11.36 21.45 0.24 -52.56 16 2 C 0.02 0.86 5.30 84.65 0.45 1.31 16 3 Si 0.95 43.75 29.54 68.60 2.03 45.77 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.53 -29.61 8.56 25.60 0.22 -29.39 16 8 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 9 C 0.05 2.50 2.26 -11.49 -0.03 2.48 16 10 H 0.00 -0.12 8.14 -2.38 -0.02 -0.14 16 11 C -0.11 -5.04 5.03 30.68 0.15 -4.89 16 12 C -0.11 -4.08 6.09 30.65 0.19 -3.89 16 13 C 0.06 1.97 5.15 86.33 0.45 2.41 16 14 N -0.48 -18.39 4.63 -701.68 -3.25 -21.64 16 15 C 0.30 9.97 6.42 133.11 0.85 10.82 16 16 N -0.52 -16.27 8.66 -192.23 -1.66 -17.94 16 17 C 0.17 4.09 10.85 84.91 0.92 5.01 16 18 C -0.08 -1.79 5.89 -19.94 -0.12 -1.90 16 19 C 0.22 4.43 7.95 137.37 1.09 5.52 16 20 N -0.29 -5.96 12.30 -52.19 -0.64 -6.60 16 21 N -0.05 -0.84 13.47 37.02 0.50 -0.35 16 22 N -0.20 -2.05 7.90 37.02 0.29 -1.76 16 23 H 0.50 0.13 8.96 -347.54 -3.12 -2.98 16 24 N -0.29 -4.62 12.09 -52.14 -0.63 -5.25 16 25 C -0.03 -0.68 9.81 22.68 0.22 -0.46 16 26 C 0.02 0.52 6.97 22.55 0.16 0.68 16 27 F -0.12 -3.42 14.73 44.97 0.66 -2.76 16 28 C 0.10 4.39 3.87 86.33 0.33 4.72 16 29 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 30 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.06 3.44 6.17 -2.39 -0.01 3.42 16 32 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.10 3.11 5.50 -2.38 -0.01 3.09 16 35 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.19 3.61 7.88 -2.91 -0.02 3.58 16 37 H 0.18 3.19 7.96 -2.91 -0.02 3.16 16 38 H 0.06 2.86 7.70 -2.39 -0.02 2.84 16 39 H 0.04 1.59 8.11 -2.39 -0.02 1.57 16 Total: -1.00 -67.39 329.21 0.43 -66.96 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -2.00 Total: 3.69 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: 4.89 Total: -7.58 kcal Atomic # 7 Polarization: -100.94 SS G_CDS: -5.15 Total: -106.09 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.66 Total: -2.76 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -67.39 0.43 -66.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592673731.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.765 kcal (2) G-P(sol) polarization free energy of solvation -67.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds