Wall clock time and date at job start Tue Mar 31 2020 13:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38081 * 119.84554 * 2 1 4 4 C 1.39718 * 120.13767 * 179.97438 * 3 2 1 5 5 C 1.47741 * 120.08165 * 180.02562 * 4 3 2 6 6 O 1.21469 * 120.00138 * 180.02562 * 5 4 3 7 7 O 1.34707 * 119.99809 * 359.97438 * 5 4 3 8 8 C 1.39390 * 119.84141 * 0.27784 * 4 3 2 9 9 C 1.39290 * 119.69970 * 359.40521 * 8 4 3 10 10 C 1.47857 * 120.06790 * 180.31676 * 9 8 4 11 11 O 1.21558 * 120.00180 * 34.20586 * 10 9 8 12 12 N 1.34779 * 120.00212 * 214.19974 * 10 9 8 13 13 C 1.46967 * 120.58812 * 4.99900 * 12 10 9 14 14 C 1.53814 * 108.39759 * 124.75561 * 13 12 10 15 15 N 1.46968 * 108.58044 * 49.63664 * 14 13 12 16 16 C 1.36936 * 120.59528 * 124.62238 * 15 14 13 17 17 H 1.08003 * 119.99765 * 210.98284 * 16 15 14 18 18 C 1.38808 * 119.99753 * 30.97631 * 16 15 14 19 19 N 1.31624 * 120.00251 * 215.03136 * 18 16 15 20 20 Si 1.86805 * 119.99981 * 35.03904 * 18 16 15 21 21 H 1.48497 * 109.47099 * 93.10662 * 20 18 16 22 22 H 1.48500 * 109.47117 * 213.10562 * 20 18 16 23 23 H 1.48501 * 109.47065 * 333.10592 * 20 18 16 24 24 C 1.46967 * 118.80753 * 304.65229 * 15 14 13 25 25 C 1.46959 * 120.59818 * 185.27554 * 12 10 9 26 26 C 1.38062 * 119.84918 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.47330 * 90.00351 * 1 2 3 28 28 H 1.09005 * 109.47022 * 210.00107 * 1 2 3 29 29 H 1.09004 * 109.47711 * 330.00304 * 1 2 3 30 30 H 1.08000 * 119.93613 * 0.02562 * 3 2 1 31 31 H 0.96702 * 117.00369 * 179.97438 * 7 5 4 32 32 H 1.07998 * 120.15036 * 179.72185 * 8 4 3 33 33 H 1.09002 * 109.61016 * 244.54117 * 13 12 10 34 34 H 1.09002 * 109.61291 * 5.05364 * 13 12 10 35 35 H 1.09002 * 109.74255 * 289.84959 * 14 13 12 36 36 H 1.09004 * 109.53134 * 169.30272 * 14 13 12 37 37 H 0.96994 * 119.99864 * 179.97438 * 19 18 16 38 38 H 1.09001 * 109.60510 * 295.46939 * 24 15 14 39 39 H 1.09002 * 109.60586 * 174.97058 * 24 15 14 40 40 H 1.09000 * 109.61257 * 354.95437 * 25 12 10 41 41 H 1.09001 * 109.61041 * 115.29114 * 25 12 10 42 42 H 1.08001 * 119.92140 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1942 1.1977 0.0000 4 6 3.5913 1.2048 0.0005 5 6 4.3253 2.4870 0.0011 6 8 5.5400 2.4915 0.0011 7 8 3.6475 3.6511 0.0006 8 6 4.2911 -0.0007 -0.0048 9 6 3.5912 -1.2050 0.0020 10 6 4.3253 -2.4884 0.0035 11 8 5.3851 -2.5818 0.5915 12 7 3.8194 -3.5549 -0.6471 13 6 2.5964 -3.4288 -1.4523 14 6 2.9005 -3.9211 -2.8774 15 7 3.5585 -5.2323 -2.7894 16 6 3.0440 -6.3160 -3.4497 17 1 3.1692 -7.3074 -3.0400 18 6 2.3613 -6.1403 -4.6455 19 7 1.3365 -6.9127 -4.9380 20 14 2.8973 -4.8077 -5.8398 21 1 3.8451 -5.3813 -6.8287 22 1 1.7080 -4.2702 -6.5482 23 1 3.5651 -3.7121 -5.0920 24 6 4.7783 -5.3597 -1.9796 25 6 4.4774 -4.8661 -0.5591 26 6 2.1942 -1.1975 0.0005 27 1 -0.3634 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3635 0.8900 0.5138 30 1 1.6506 2.1309 0.0004 31 1 4.1711 4.4641 0.0014 32 1 5.3711 -0.0010 -0.0089 33 1 1.8051 -4.0366 -1.0134 34 1 2.2847 -2.3847 -1.4831 35 1 3.5610 -3.2133 -3.3784 36 1 1.9697 -4.0157 -3.4367 37 1 0.8593 -6.7896 -5.7734 38 1 5.5724 -4.7543 -2.4168 39 1 5.0877 -6.4043 -1.9461 40 1 5.4081 -4.7715 0.0002 41 1 3.8182 -5.5731 -0.0554 42 1 1.6504 -2.1306 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594285051.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:02 Heat of formation + Delta-G solvation = -52.263687 kcal Electronic energy + Delta-G solvation = -26808.277435 eV Core-core repulsion = 22947.832386 eV Total energy + Delta-G solvation = -3860.445049 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.95046 -40.11602 -38.56587 -37.07116 -36.39878 -34.14824 -33.15195 -32.40305 -31.37640 -30.44979 -27.39602 -27.26061 -25.18856 -24.46876 -23.26794 -22.85628 -20.99449 -20.59384 -19.16375 -18.27745 -17.71978 -16.90318 -16.64498 -16.12563 -15.93629 -15.74898 -15.31932 -15.03077 -14.56673 -14.31514 -14.04612 -13.92056 -13.74350 -13.49849 -13.48521 -13.05674 -12.66139 -12.51620 -12.27416 -12.23122 -12.15892 -11.86187 -11.75670 -11.62696 -11.09357 -10.91894 -10.85040 -10.56877 -10.41372 -10.23077 -9.75919 -9.58327 -9.19787 -9.07816 -8.77305 -8.31271 -7.01526 -6.16012 -3.40433 0.29753 0.78613 2.12051 2.60324 2.86848 3.16227 3.31459 3.43784 3.49605 3.54618 4.31188 4.37507 4.46496 4.57834 4.79058 4.80326 4.84335 4.98829 5.14680 5.18985 5.36482 5.40046 5.43988 5.48782 5.55186 5.70855 5.74017 5.81019 5.90634 5.95989 5.98757 6.05012 6.09559 6.14759 6.17960 6.42158 6.45130 6.53967 6.69985 6.83199 7.57043 7.60894 7.84648 8.20877 8.27268 8.82888 9.59894 10.01499 10.98716 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015302 B = 0.003760 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.343305 B = 7445.603959 C = 7887.616609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.107 4.107 3 C -0.043 4.043 4 C -0.135 4.135 5 C 0.530 3.470 6 O -0.509 6.509 7 O -0.513 6.513 8 C -0.007 4.007 9 C -0.129 4.129 10 C 0.554 3.446 11 O -0.544 6.544 12 N -0.590 5.590 13 C 0.068 3.932 14 C 0.131 3.869 15 N -0.599 5.599 16 C -0.277 4.277 17 H 0.081 0.919 18 C 0.043 3.957 19 N -0.880 5.880 20 Si 0.837 3.163 21 H -0.290 1.290 22 H -0.294 1.294 23 H -0.257 1.257 24 C 0.131 3.869 25 C 0.096 3.904 26 C -0.055 4.055 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.142 0.858 31 H 0.415 0.585 32 H 0.147 0.853 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.034 0.966 36 H 0.079 0.921 37 H 0.264 0.736 38 H 0.027 0.973 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.439 17.663 10.742 20.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.107 4.107 3 C -0.061 4.061 4 C -0.136 4.136 5 C 0.374 3.626 6 O -0.398 6.398 7 O -0.325 6.325 8 C -0.026 4.026 9 C -0.132 4.132 10 C 0.342 3.658 11 O -0.423 6.423 12 N -0.321 5.321 13 C -0.056 4.056 14 C 0.004 3.996 15 N -0.323 5.323 16 C -0.404 4.404 17 H 0.099 0.901 18 C -0.159 4.159 19 N -0.520 5.520 20 Si 0.664 3.336 21 H -0.217 1.217 22 H -0.220 1.220 23 H -0.182 1.182 24 C 0.004 3.996 25 C -0.027 4.027 26 C -0.073 4.073 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.160 0.840 31 H 0.274 0.726 32 H 0.165 0.835 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.052 0.948 36 H 0.097 0.903 37 H 0.074 0.926 38 H 0.045 0.955 39 H 0.095 0.905 40 H 0.105 0.895 41 H 0.088 0.912 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.924 17.120 10.913 20.394 hybrid contribution 0.584 1.196 -1.027 1.681 sum -1.340 18.316 9.886 20.857 Atomic orbital electron populations 1.20828 0.89749 1.03399 1.03171 1.19877 0.97027 0.92222 1.01541 1.21490 0.92447 0.98716 0.93471 1.18869 0.93623 0.90098 1.11002 1.20788 0.85460 0.84228 0.72137 1.90921 1.14970 1.88013 1.45908 1.84536 1.45043 1.16938 1.85947 1.21263 1.01238 0.89167 0.90898 1.19874 0.93790 0.93797 1.05786 1.18164 0.84861 0.83333 0.79421 1.90762 1.22064 1.84019 1.45467 1.47918 1.27500 1.09391 1.47320 1.23189 0.86300 1.01495 0.94589 1.21827 0.97624 0.87701 0.92459 1.44279 1.25139 1.06762 1.56095 1.18754 1.32000 0.87728 1.01942 0.90106 1.25323 0.96520 0.96623 0.97417 1.70073 1.16116 1.41467 1.24303 0.87558 0.78996 0.83714 0.83326 1.21745 1.22034 1.18194 1.21379 0.89103 0.99923 0.89175 1.22265 0.98091 0.82417 0.99951 1.21878 0.93052 0.99116 0.93273 0.90417 0.90874 0.91095 0.84034 0.72625 0.83545 0.90488 0.89484 0.94842 0.90318 0.92627 0.95482 0.90540 0.89495 0.91183 0.83474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.00 36.01 0.36 -0.40 16 2 C -0.11 -0.99 5.87 -104.74 -0.61 -1.60 16 3 C -0.04 -0.40 9.26 -39.09 -0.36 -0.76 16 4 C -0.13 -1.55 5.87 -105.03 -0.62 -2.17 16 5 C 0.53 5.94 8.27 34.61 0.29 6.23 16 6 O -0.51 -7.32 17.13 -19.24 -0.33 -7.65 16 7 O -0.51 -3.80 12.67 -40.51 -0.51 -4.32 16 8 C -0.01 -0.09 9.15 -38.76 -0.35 -0.44 16 9 C -0.13 -1.80 5.36 -105.02 -0.56 -2.36 16 10 C 0.55 9.31 7.40 -12.32 -0.09 9.22 16 11 O -0.54 -10.66 16.21 5.31 0.09 -10.58 16 12 N -0.59 -9.84 2.94 -173.32 -0.51 -10.35 16 13 C 0.07 1.08 4.97 -3.36 -0.02 1.06 16 14 C 0.13 2.62 4.57 -3.36 -0.02 2.60 16 15 N -0.60 -13.44 2.64 -171.76 -0.45 -13.89 16 16 C -0.28 -7.28 9.82 -15.06 -0.15 -7.43 16 17 H 0.08 2.28 8.06 -52.48 -0.42 1.85 16 18 C 0.04 1.17 4.82 -17.43 -0.08 1.09 16 19 N -0.88 -25.36 13.97 55.49 0.78 -24.59 16 20 Si 0.84 20.39 26.66 -169.99 -4.53 15.86 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.26 -5.99 4.92 56.52 0.28 -5.71 16 24 C 0.13 2.52 6.67 -3.60 -0.02 2.49 16 25 C 0.10 1.63 6.60 -3.60 -0.02 1.61 16 26 C -0.05 -0.61 6.99 -39.10 -0.27 -0.89 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 29 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 30 H 0.14 1.00 7.60 -52.49 -0.40 0.60 16 31 H 0.41 1.23 9.11 45.56 0.42 1.65 16 32 H 0.15 2.17 7.57 -52.49 -0.40 1.78 16 33 H 0.08 1.18 8.09 -51.93 -0.42 0.76 16 34 H 0.09 1.16 4.18 -51.93 -0.22 0.94 16 35 H 0.03 0.70 6.69 -51.93 -0.35 0.35 16 36 H 0.08 1.67 5.96 -51.93 -0.31 1.36 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 38 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.08 1.42 7.93 -51.93 -0.41 1.01 16 40 H 0.09 1.44 6.99 -51.93 -0.36 1.08 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.15 1.51 5.84 -52.49 -0.31 1.20 16 LS Contribution 343.89 15.07 5.18 5.18 Total: -1.00 -33.77 343.89 -7.38 -41.15 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -4.54 Total: 0.92 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: -2.54 Total: 8.26 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: -0.19 Total: -48.83 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.76 Total: -22.55 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.53 Total: 15.86 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.77 -7.38 -41.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594285051.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.112 kcal (2) G-P(sol) polarization free energy of solvation -33.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds