Wall clock time and date at job start Tue Mar 31 2020 13:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38081 * 119.84554 * 2 1 4 4 C 1.39718 * 120.13767 * 179.97438 * 3 2 1 5 5 C 1.47741 * 120.08165 * 180.02562 * 4 3 2 6 6 O 1.21469 * 120.00138 * 180.02562 * 5 4 3 7 7 O 1.34707 * 119.99809 * 359.97438 * 5 4 3 8 8 C 1.39390 * 119.84141 * 0.27784 * 4 3 2 9 9 C 1.39290 * 119.69970 * 359.40521 * 8 4 3 10 10 C 1.47857 * 120.06790 * 180.31676 * 9 8 4 11 11 O 1.21558 * 120.00180 * 34.20586 * 10 9 8 12 12 N 1.34779 * 120.00212 * 214.19974 * 10 9 8 13 13 C 1.46967 * 120.58812 * 4.99900 * 12 10 9 14 14 C 1.53814 * 108.39759 * 124.75561 * 13 12 10 15 15 N 1.46968 * 108.58044 * 49.63664 * 14 13 12 16 16 C 1.36936 * 120.59528 * 124.62238 * 15 14 13 17 17 H 1.08003 * 119.99765 * 210.98284 * 16 15 14 18 18 C 1.38808 * 119.99753 * 30.97631 * 16 15 14 19 19 N 1.31624 * 120.00251 * 215.03136 * 18 16 15 20 20 Si 1.86805 * 119.99981 * 35.03904 * 18 16 15 21 21 H 1.48497 * 109.47099 * 93.10662 * 20 18 16 22 22 H 1.48500 * 109.47117 * 213.10562 * 20 18 16 23 23 H 1.48501 * 109.47065 * 333.10592 * 20 18 16 24 24 C 1.46967 * 118.80753 * 304.65229 * 15 14 13 25 25 C 1.46959 * 120.59818 * 185.27554 * 12 10 9 26 26 C 1.38062 * 119.84918 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.47330 * 90.00351 * 1 2 3 28 28 H 1.09005 * 109.47022 * 210.00107 * 1 2 3 29 29 H 1.09004 * 109.47711 * 330.00304 * 1 2 3 30 30 H 1.08000 * 119.93613 * 0.02562 * 3 2 1 31 31 H 0.96702 * 117.00369 * 179.97438 * 7 5 4 32 32 H 1.07998 * 120.15036 * 179.72185 * 8 4 3 33 33 H 1.09002 * 109.61016 * 244.54117 * 13 12 10 34 34 H 1.09002 * 109.61291 * 5.05364 * 13 12 10 35 35 H 1.09002 * 109.74255 * 289.84959 * 14 13 12 36 36 H 1.09004 * 109.53134 * 169.30272 * 14 13 12 37 37 H 0.96994 * 119.99864 * 179.97438 * 19 18 16 38 38 H 1.09001 * 109.60510 * 295.46939 * 24 15 14 39 39 H 1.09002 * 109.60586 * 174.97058 * 24 15 14 40 40 H 1.09000 * 109.61257 * 354.95437 * 25 12 10 41 41 H 1.09001 * 109.61041 * 115.29114 * 25 12 10 42 42 H 1.08001 * 119.92140 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1942 1.1977 0.0000 4 6 3.5913 1.2048 0.0005 5 6 4.3253 2.4870 0.0011 6 8 5.5400 2.4915 0.0011 7 8 3.6475 3.6511 0.0006 8 6 4.2911 -0.0007 -0.0048 9 6 3.5912 -1.2050 0.0020 10 6 4.3253 -2.4884 0.0035 11 8 5.3851 -2.5818 0.5915 12 7 3.8194 -3.5549 -0.6471 13 6 2.5964 -3.4288 -1.4523 14 6 2.9005 -3.9211 -2.8774 15 7 3.5585 -5.2323 -2.7894 16 6 3.0440 -6.3160 -3.4497 17 1 3.1692 -7.3074 -3.0400 18 6 2.3613 -6.1403 -4.6455 19 7 1.3365 -6.9127 -4.9380 20 14 2.8973 -4.8077 -5.8398 21 1 3.8451 -5.3813 -6.8287 22 1 1.7080 -4.2702 -6.5482 23 1 3.5651 -3.7121 -5.0920 24 6 4.7783 -5.3597 -1.9796 25 6 4.4774 -4.8661 -0.5591 26 6 2.1942 -1.1975 0.0005 27 1 -0.3634 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3635 0.8900 0.5138 30 1 1.6506 2.1309 0.0004 31 1 4.1711 4.4641 0.0014 32 1 5.3711 -0.0010 -0.0089 33 1 1.8051 -4.0366 -1.0134 34 1 2.2847 -2.3847 -1.4831 35 1 3.5610 -3.2133 -3.3784 36 1 1.9697 -4.0157 -3.4367 37 1 0.8593 -6.7896 -5.7734 38 1 5.5724 -4.7543 -2.4168 39 1 5.0877 -6.4043 -1.9461 40 1 5.4081 -4.7715 0.0002 41 1 3.8182 -5.5731 -0.0554 42 1 1.6504 -2.1306 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594285051.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:00 Heat of formation + Delta-G solvation = -75.086540 kcal Electronic energy + Delta-G solvation = -26809.267108 eV Core-core repulsion = 22947.832386 eV Total energy + Delta-G solvation = -3861.434722 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -41.95536 -41.16106 -39.58370 -38.59108 -37.17242 -35.77477 -33.96370 -33.84253 -32.97278 -31.79181 -28.99570 -27.94982 -26.09395 -25.93272 -24.71634 -24.24830 -22.19368 -21.64152 -20.45511 -19.30935 -18.88147 -18.18746 -17.92617 -17.18458 -16.99298 -16.81767 -16.69751 -16.50536 -16.03879 -15.82217 -15.27274 -15.07698 -14.84199 -14.55244 -14.48159 -14.34676 -14.19660 -14.08819 -13.49928 -13.12534 -13.02217 -12.80288 -12.73607 -12.64772 -12.61930 -12.51911 -12.28474 -12.07187 -11.91106 -11.78765 -11.47081 -11.04796 -10.67427 -10.18585 -9.97472 -9.83489 -8.84369 -8.24834 -5.45906 -0.56864 -0.14724 1.23838 1.34457 1.46646 1.53038 1.62050 1.83680 2.02630 2.43500 2.58871 2.94161 3.25196 3.35491 3.61549 3.77114 3.91233 4.00121 4.07527 4.09986 4.18078 4.32367 4.38839 4.47667 4.54481 4.57950 4.64254 4.72249 4.79098 4.84949 4.94564 4.96824 5.03135 5.07501 5.15181 5.26868 5.36859 5.43406 5.49488 5.65956 5.86379 6.12060 6.30624 6.89118 6.89553 6.96341 7.59633 8.04564 8.93642 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015302 B = 0.003760 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.343305 B = 7445.603959 C = 7887.616609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.094 4.094 3 C -0.026 4.026 4 C -0.141 4.141 5 C 0.537 3.463 6 O -0.550 6.550 7 O -0.496 6.496 8 C -0.024 4.024 9 C -0.147 4.147 10 C 0.554 3.446 11 O -0.580 6.580 12 N -0.593 5.593 13 C 0.081 3.919 14 C 0.125 3.875 15 N -0.611 5.611 16 C -0.266 4.266 17 H 0.052 0.948 18 C -0.001 4.001 19 N -0.924 5.924 20 Si 0.895 3.105 21 H -0.304 1.304 22 H -0.291 1.291 23 H -0.241 1.241 24 C 0.130 3.870 25 C 0.105 3.895 26 C -0.056 4.056 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.174 0.826 31 H 0.436 0.564 32 H 0.121 0.879 33 H 0.088 0.912 34 H 0.118 0.882 35 H 0.029 0.971 36 H 0.068 0.932 37 H 0.264 0.736 38 H 0.024 0.976 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.333 20.572 11.430 23.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.094 4.094 3 C -0.044 4.044 4 C -0.143 4.143 5 C 0.382 3.618 6 O -0.443 6.443 7 O -0.310 6.310 8 C -0.044 4.044 9 C -0.150 4.150 10 C 0.344 3.656 11 O -0.461 6.461 12 N -0.324 5.324 13 C -0.042 4.042 14 C -0.001 4.001 15 N -0.335 5.335 16 C -0.395 4.395 17 H 0.070 0.930 18 C -0.200 4.200 19 N -0.567 5.567 20 Si 0.723 3.277 21 H -0.232 1.232 22 H -0.217 1.217 23 H -0.165 1.165 24 C 0.005 3.995 25 C -0.019 4.019 26 C -0.075 4.075 27 H 0.106 0.894 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.191 0.809 31 H 0.299 0.701 32 H 0.139 0.861 33 H 0.106 0.894 34 H 0.136 0.864 35 H 0.046 0.954 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.042 0.958 39 H 0.096 0.904 40 H 0.108 0.892 41 H 0.096 0.904 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.826 20.092 11.618 23.522 hybrid contribution 1.162 0.355 -1.164 1.683 sum -2.664 20.447 10.453 23.118 Atomic orbital electron populations 1.20944 0.87190 1.04868 1.04199 1.20220 0.98616 0.91246 0.99348 1.21848 0.91302 1.00161 0.91058 1.18950 0.94704 0.89498 1.11111 1.20745 0.84807 0.85076 0.71145 1.90914 1.16736 1.88638 1.47973 1.84476 1.44666 1.16881 1.84927 1.21114 1.00315 0.90327 0.92595 1.19646 0.94870 0.92098 1.08372 1.18625 0.84419 0.84094 0.78431 1.90735 1.23776 1.84670 1.46952 1.47972 1.27730 1.09249 1.47449 1.23114 0.86043 1.03439 0.91596 1.21866 0.96724 0.86359 0.95152 1.44393 1.26435 1.06699 1.56022 1.18675 1.30942 0.87932 1.01927 0.93045 1.25745 0.96660 0.98956 0.98652 1.70141 1.17616 1.44028 1.24892 0.86636 0.78220 0.81867 0.81015 1.23237 1.21719 1.16540 1.21445 0.87875 1.00225 0.89996 1.22089 0.98634 0.82982 0.98200 1.22006 0.91707 1.00619 0.93134 0.89422 0.90178 0.89039 0.80886 0.70147 0.86055 0.89413 0.86405 0.95357 0.91345 0.92641 0.95844 0.90402 0.89192 0.90419 0.82371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 10.00 71.24 0.71 -0.22 16 2 C -0.09 -1.35 5.87 -19.94 -0.12 -1.47 16 3 C -0.03 -0.37 9.26 22.59 0.21 -0.16 16 4 C -0.14 -2.98 5.87 -20.13 -0.12 -3.10 16 5 C 0.54 11.12 8.27 70.33 0.58 11.70 16 6 O -0.55 -15.73 17.13 19.94 0.34 -15.39 16 7 O -0.50 -5.70 12.67 -56.16 -0.71 -6.41 16 8 C -0.02 -0.65 9.15 22.80 0.21 -0.44 16 9 C -0.15 -3.91 5.36 -20.12 -0.11 -4.02 16 10 C 0.55 18.40 7.40 86.79 0.64 19.04 16 11 O -0.58 -23.10 16.21 -3.90 -0.06 -23.16 16 12 N -0.59 -19.14 2.94 -820.55 -2.41 -21.56 16 13 C 0.08 2.40 4.97 86.56 0.43 2.83 16 14 C 0.12 4.84 4.57 86.56 0.40 5.23 16 15 N -0.61 -27.19 2.64 -697.33 -1.84 -29.03 16 16 C -0.27 -14.14 9.82 84.03 0.82 -13.32 16 17 H 0.05 2.99 8.06 -2.91 -0.02 2.97 16 18 C 0.00 -0.08 4.82 84.86 0.41 0.33 16 19 N -0.92 -54.09 13.97 21.65 0.30 -53.79 16 20 Si 0.90 42.41 26.66 68.60 1.83 44.23 16 21 H -0.30 -15.02 7.11 99.48 0.71 -14.31 16 22 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 23 H -0.24 -10.69 4.92 99.48 0.49 -10.20 16 24 C 0.13 5.00 6.67 86.41 0.58 5.58 16 25 C 0.10 3.49 6.60 86.41 0.57 4.06 16 26 C -0.06 -1.09 6.99 22.58 0.16 -0.94 16 27 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.08 0.59 8.08 -2.38 -0.02 0.57 16 29 H 0.09 0.42 8.08 -2.39 -0.02 0.40 16 30 H 0.17 1.46 7.60 -2.91 -0.02 1.43 16 31 H 0.44 1.19 9.11 -74.06 -0.67 0.52 16 32 H 0.12 3.82 7.57 -2.91 -0.02 3.79 16 33 H 0.09 2.45 8.09 -2.39 -0.02 2.44 16 34 H 0.12 2.78 4.18 -2.39 -0.01 2.77 16 35 H 0.03 1.14 6.69 -2.39 -0.02 1.12 16 36 H 0.07 2.80 5.96 -2.38 -0.01 2.78 16 37 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 38 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.08 2.92 7.93 -2.39 -0.02 2.90 16 40 H 0.09 2.97 6.99 -2.39 -0.02 2.96 16 41 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.16 2.68 5.84 -2.91 -0.02 2.67 16 Total: -1.00 -75.13 343.89 3.00 -72.12 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: 0.18 Total: 7.87 kcal Atomic # 6 Polarization: 19.73 SS G_CDS: 5.38 Total: 25.11 kcal Atomic # 7 Polarization: -100.43 SS G_CDS: -3.95 Total: -104.37 kcal Atomic # 8 Polarization: -44.53 SS G_CDS: -0.43 Total: -44.96 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 1.83 Total: 44.23 kcal Total: -75.13 3.00 -72.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594285051.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.965 kcal (2) G-P(sol) polarization free energy of solvation -75.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds