Wall clock time and date at job start Tue Mar 31 2020 11:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48505 * 109.47087 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47042 * 120.00217 * 3 2 1 6 6 H 1.48503 * 109.47023 * 240.00446 * 3 2 1 7 7 C 1.40044 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00127 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00321 * 359.97438 * 7 2 1 10 10 O 1.21687 * 119.99681 * 354.99925 * 9 7 2 11 11 N 1.34777 * 120.00313 * 175.00114 * 9 7 2 12 12 C 1.47077 * 120.87886 * 4.94953 * 11 9 7 13 13 C 1.53698 * 108.27700 * 128.75585 * 12 11 9 14 14 N 1.46898 * 109.25562 * 54.08236 * 13 12 11 15 15 C 1.46897 * 111.00153 * 172.60616 * 14 13 12 16 16 C 1.50703 * 109.47306 * 314.30128 * 15 14 13 17 17 C 1.38389 * 119.91972 * 89.99667 * 16 15 14 18 18 C 1.38350 * 120.29746 * 180.02562 * 17 16 15 19 19 C 1.37960 * 120.15386 * 0.02562 * 18 17 16 20 20 C 1.39614 * 119.84442 * 359.97438 * 19 18 17 21 21 C 1.47727 * 120.14851 * 180.02562 * 20 19 18 22 22 O 1.21470 * 120.00236 * 180.02562 * 21 20 19 23 23 O 1.34716 * 120.00251 * 359.97438 * 21 20 19 24 24 C 1.37915 * 119.92659 * 269.72654 * 16 15 14 25 25 C 1.46905 * 111.27013 * 296.75466 * 14 13 12 26 26 C 1.47076 * 120.88062 * 185.22734 * 11 9 7 27 27 H 0.97000 * 120.00181 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.62715 * 248.52147 * 12 11 9 29 29 H 1.09000 * 109.63081 * 9.10385 * 12 11 9 30 30 H 1.09001 * 109.64838 * 294.07883 * 13 12 11 31 31 H 1.09004 * 109.42089 * 173.94552 * 13 12 11 32 32 H 1.09008 * 109.47010 * 74.30063 * 15 14 13 33 33 H 1.09000 * 109.47622 * 194.30162 * 15 14 13 34 34 H 1.07994 * 119.85570 * 359.97438 * 17 16 15 35 35 H 1.08007 * 119.92400 * 180.02562 * 18 17 16 36 36 H 1.07999 * 120.07995 * 180.02562 * 19 18 17 37 37 H 0.96698 * 117.00011 * 180.02562 * 23 21 20 38 38 H 1.08005 * 120.07798 * 359.97438 * 24 16 15 39 39 H 1.08994 * 109.49159 * 303.15220 * 25 14 13 40 40 H 1.08996 * 109.49043 * 183.06336 * 25 14 13 41 41 H 1.08999 * 109.63197 * 350.89564 * 26 11 9 42 42 H 1.09002 * 109.62700 * 111.28074 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 1.2757 2.7464 -0.0006 5 1 3.0945 1.6963 1.2125 6 1 3.0944 1.6963 -1.2126 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0617 -2.4825 0.0918 11 7 1.9449 -3.6455 -0.1028 12 6 3.4155 -3.6728 -0.1066 13 6 3.8814 -4.6906 0.9466 14 7 3.2360 -5.9847 0.6885 15 6 3.7848 -7.0303 1.5623 16 6 5.2888 -6.9357 1.5755 17 6 5.9223 -6.1412 2.5150 18 6 7.3025 -6.0483 2.5339 19 6 8.0568 -6.7477 1.6146 20 6 7.4242 -7.5510 0.6640 21 6 8.2253 -8.3033 -0.3232 22 8 7.6721 -9.0011 -1.1493 23 8 9.5695 -8.2146 -0.3079 24 6 6.0309 -7.6454 0.6549 25 6 1.7771 -5.8907 0.8322 26 6 1.2249 -4.9226 -0.2195 27 1 -0.4850 0.8400 0.0004 28 1 3.7736 -3.9711 -1.0920 29 1 3.8007 -2.6840 0.1423 30 1 3.6077 -4.3397 1.9417 31 1 4.9637 -4.8053 0.8859 32 1 3.4033 -6.8950 2.5745 33 1 3.4857 -8.0097 1.1892 34 1 5.3366 -5.5906 3.2362 35 1 7.7907 -5.4268 3.2701 36 1 9.1342 -6.6746 1.6307 37 1 10.0507 -8.7248 -0.9737 38 1 5.5355 -8.2689 -0.0748 39 1 1.5327 -5.5231 1.8288 40 1 1.3333 -6.8758 0.6885 41 1 0.1612 -4.7606 -0.0453 42 1 1.3736 -5.3370 -1.2167 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594605590.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:20 Heat of formation + Delta-G solvation = -83.386314 kcal Electronic energy + Delta-G solvation = -26263.895424 eV Core-core repulsion = 22402.100796 eV Total energy + Delta-G solvation = -3861.794628 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.73384 -39.58128 -38.39140 -36.51504 -36.35608 -33.83585 -32.51374 -31.76746 -31.44019 -30.40652 -27.69933 -26.14344 -25.05781 -24.15459 -23.11975 -21.93088 -21.08660 -20.59667 -18.81422 -18.19782 -17.52781 -16.66549 -16.26118 -15.92452 -15.82105 -15.50140 -15.11065 -14.96912 -14.38108 -14.24444 -14.22137 -13.90747 -13.69807 -13.60066 -13.02512 -12.79282 -12.50169 -12.17271 -11.87849 -11.86570 -11.71495 -11.41563 -11.34126 -11.15699 -10.94523 -10.90541 -10.84218 -10.75470 -10.43158 -10.24402 -9.99380 -9.28907 -9.11247 -8.86621 -8.17985 -7.59724 -7.18839 -6.21000 -4.66154 0.42093 1.06457 2.27460 2.70863 3.13971 3.19135 3.20651 3.45055 4.05534 4.17059 4.42726 4.54137 4.57892 4.62293 4.68449 4.87593 5.00529 5.04122 5.31948 5.39591 5.45801 5.50838 5.59828 5.68863 5.71435 5.77568 5.85102 5.86361 5.98052 6.08137 6.09848 6.15923 6.23795 6.30092 6.45789 6.54027 6.55202 6.71314 7.16968 7.25090 7.43768 7.59773 7.60884 8.12089 8.35528 9.00561 9.43491 10.56374 10.74965 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016950 B = 0.003026 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.518297 B = 9249.745693 C =10009.665543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.072 0.928 9 C 0.560 3.440 10 O -0.579 6.579 11 N -0.645 5.645 12 C 0.129 3.871 13 C 0.037 3.963 14 N -0.531 5.531 15 C 0.092 3.908 16 C -0.089 4.089 17 C -0.073 4.073 18 C -0.134 4.134 19 C -0.062 4.062 20 C -0.133 4.133 21 C 0.528 3.472 22 O -0.512 6.512 23 O -0.514 6.514 24 C -0.033 4.033 25 C 0.046 3.954 26 C 0.125 3.875 27 H 0.269 0.731 28 H 0.049 0.951 29 H 0.094 0.906 30 H 0.035 0.965 31 H 0.078 0.922 32 H 0.044 0.956 33 H 0.085 0.915 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.137 0.863 37 H 0.414 0.586 38 H 0.140 0.860 39 H 0.036 0.964 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.402 -14.388 4.865 23.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.090 0.910 9 C 0.366 3.634 10 O -0.462 6.462 11 N -0.383 5.383 12 C 0.004 3.996 13 C -0.092 4.092 14 N -0.256 5.256 15 C -0.036 4.036 16 C -0.089 4.089 17 C -0.091 4.091 18 C -0.152 4.152 19 C -0.081 4.081 20 C -0.134 4.134 21 C 0.372 3.628 22 O -0.402 6.402 23 O -0.326 6.326 24 C -0.052 4.052 25 C -0.083 4.083 26 C 0.001 3.999 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.112 0.888 30 H 0.053 0.947 31 H 0.096 0.904 32 H 0.062 0.938 33 H 0.103 0.897 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.154 0.846 37 H 0.272 0.728 38 H 0.158 0.842 39 H 0.054 0.946 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 16.237 -14.351 4.498 22.132 hybrid contribution 0.783 0.633 0.377 1.075 sum 17.020 -13.718 4.875 22.397 Atomic orbital electron populations 1.70004 1.07075 1.27414 1.35214 1.25725 0.94610 1.00283 0.92579 0.86457 0.79869 0.81115 0.79475 1.20545 1.19266 1.19205 1.20935 0.93521 0.89291 1.54418 0.91030 1.18240 0.86889 0.82198 0.76080 1.90586 1.14395 1.86109 1.55096 1.48243 1.04747 1.05829 1.79504 1.21571 0.82648 0.98563 0.96815 1.22799 0.98696 0.89132 0.98582 1.62132 1.04974 1.05903 1.52549 1.21110 0.89261 0.97110 0.96072 1.19747 0.95873 0.97478 0.95790 1.21477 0.94867 0.95669 0.97114 1.21141 0.93738 1.00514 0.99763 1.21444 1.00608 0.93407 0.92632 1.19003 0.93057 1.02893 0.98440 1.20932 0.80504 0.78718 0.82604 1.90905 1.72464 1.38849 1.37959 1.84551 1.20315 1.68921 1.58786 1.21132 0.91313 0.96357 0.96367 1.22537 0.86755 0.99873 0.99107 1.21197 0.97892 0.84394 0.96450 0.92027 0.93240 0.88838 0.94683 0.90425 0.93776 0.89691 0.85313 0.84960 0.84562 0.72764 0.84247 0.94617 0.90711 0.89527 0.93220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.96 11.84 55.55 0.66 -22.30 16 2 C 0.09 2.43 5.50 -17.37 -0.10 2.34 16 3 Si 0.91 19.90 29.56 -169.99 -5.02 14.88 16 4 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.55 -15.20 8.86 -35.63 -0.32 -15.51 16 8 H 0.07 1.81 5.74 -52.49 -0.30 1.51 16 9 C 0.56 15.95 7.63 -12.99 -0.10 15.86 16 10 O -0.58 -18.74 14.49 5.20 0.08 -18.66 16 11 N -0.64 -14.80 3.00 -173.84 -0.52 -15.32 16 12 C 0.13 2.45 6.50 -3.36 -0.02 2.43 16 13 C 0.04 0.57 4.79 -3.46 -0.02 0.55 16 14 N -0.53 -7.72 4.77 -235.46 -1.12 -8.84 16 15 C 0.09 1.05 5.42 -4.98 -0.03 1.02 16 16 C -0.09 -0.95 4.12 -104.68 -0.43 -1.38 16 17 C -0.07 -0.69 7.75 -39.48 -0.31 -1.00 16 18 C -0.13 -1.11 10.03 -39.64 -0.40 -1.51 16 19 C -0.06 -0.54 9.62 -39.17 -0.38 -0.92 16 20 C -0.13 -1.39 5.87 -104.98 -0.62 -2.01 16 21 C 0.53 5.60 8.27 34.61 0.29 5.89 16 22 O -0.51 -6.96 17.13 -19.24 -0.33 -7.29 16 23 O -0.51 -3.75 12.68 -40.54 -0.51 -4.26 16 24 C -0.03 -0.37 9.24 -39.17 -0.36 -0.73 16 25 C 0.05 0.72 5.58 -3.70 -0.02 0.70 16 26 C 0.13 2.48 6.61 -3.60 -0.02 2.46 16 27 H 0.27 7.31 8.29 -40.82 -0.34 6.97 16 28 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16 29 H 0.09 1.83 5.46 -51.93 -0.28 1.55 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 1.07 5.54 -51.93 -0.29 0.78 16 32 H 0.04 0.48 8.02 -51.92 -0.42 0.07 16 33 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 34 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 36 H 0.14 0.95 7.61 -52.49 -0.40 0.55 16 37 H 0.41 1.20 9.11 45.56 0.42 1.62 16 38 H 0.14 1.61 7.65 -52.48 -0.40 1.21 16 39 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.99 8.11 -51.93 -0.42 0.57 16 41 H 0.09 1.89 7.04 -51.93 -0.37 1.53 16 42 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 349.93 15.07 5.27 5.27 Total: -1.00 -36.48 349.93 -8.88 -45.36 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -4.55 Total: 2.99 kcal Atomic # 6 Polarization: 11.00 SS G_CDS: -2.82 Total: 8.17 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: -0.99 Total: -46.47 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -0.77 Total: -30.21 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -36.48 -8.88 -45.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594605590.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.022 kcal (2) G-P(sol) polarization free energy of solvation -36.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds