Wall clock time and date at job start Tue Mar 31 2020 11:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48505 * 109.47087 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47042 * 120.00217 * 3 2 1 6 6 H 1.48503 * 109.47023 * 240.00446 * 3 2 1 7 7 C 1.40044 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00127 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00321 * 359.97438 * 7 2 1 10 10 O 1.21687 * 119.99681 * 354.99925 * 9 7 2 11 11 N 1.34777 * 120.00313 * 175.00114 * 9 7 2 12 12 C 1.47077 * 120.87886 * 4.94953 * 11 9 7 13 13 C 1.53698 * 108.27700 * 128.75585 * 12 11 9 14 14 N 1.46898 * 109.25562 * 54.08236 * 13 12 11 15 15 C 1.46897 * 111.00153 * 172.60616 * 14 13 12 16 16 C 1.50703 * 109.47306 * 314.30128 * 15 14 13 17 17 C 1.38389 * 119.91972 * 89.99667 * 16 15 14 18 18 C 1.38350 * 120.29746 * 180.02562 * 17 16 15 19 19 C 1.37960 * 120.15386 * 0.02562 * 18 17 16 20 20 C 1.39614 * 119.84442 * 359.97438 * 19 18 17 21 21 C 1.47727 * 120.14851 * 180.02562 * 20 19 18 22 22 O 1.21470 * 120.00236 * 180.02562 * 21 20 19 23 23 O 1.34716 * 120.00251 * 359.97438 * 21 20 19 24 24 C 1.37915 * 119.92659 * 269.72654 * 16 15 14 25 25 C 1.46905 * 111.27013 * 296.75466 * 14 13 12 26 26 C 1.47076 * 120.88062 * 185.22734 * 11 9 7 27 27 H 0.97000 * 120.00181 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.62715 * 248.52147 * 12 11 9 29 29 H 1.09000 * 109.63081 * 9.10385 * 12 11 9 30 30 H 1.09001 * 109.64838 * 294.07883 * 13 12 11 31 31 H 1.09004 * 109.42089 * 173.94552 * 13 12 11 32 32 H 1.09008 * 109.47010 * 74.30063 * 15 14 13 33 33 H 1.09000 * 109.47622 * 194.30162 * 15 14 13 34 34 H 1.07994 * 119.85570 * 359.97438 * 17 16 15 35 35 H 1.08007 * 119.92400 * 180.02562 * 18 17 16 36 36 H 1.07999 * 120.07995 * 180.02562 * 19 18 17 37 37 H 0.96698 * 117.00011 * 180.02562 * 23 21 20 38 38 H 1.08005 * 120.07798 * 359.97438 * 24 16 15 39 39 H 1.08994 * 109.49159 * 303.15220 * 25 14 13 40 40 H 1.08996 * 109.49043 * 183.06336 * 25 14 13 41 41 H 1.08999 * 109.63197 * 350.89564 * 26 11 9 42 42 H 1.09002 * 109.62700 * 111.28074 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 1.2757 2.7464 -0.0006 5 1 3.0945 1.6963 1.2125 6 1 3.0944 1.6963 -1.2126 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0617 -2.4825 0.0918 11 7 1.9449 -3.6455 -0.1028 12 6 3.4155 -3.6728 -0.1066 13 6 3.8814 -4.6906 0.9466 14 7 3.2360 -5.9847 0.6885 15 6 3.7848 -7.0303 1.5623 16 6 5.2888 -6.9357 1.5755 17 6 5.9223 -6.1412 2.5150 18 6 7.3025 -6.0483 2.5339 19 6 8.0568 -6.7477 1.6146 20 6 7.4242 -7.5510 0.6640 21 6 8.2253 -8.3033 -0.3232 22 8 7.6721 -9.0011 -1.1493 23 8 9.5695 -8.2146 -0.3079 24 6 6.0309 -7.6454 0.6549 25 6 1.7771 -5.8907 0.8322 26 6 1.2249 -4.9226 -0.2195 27 1 -0.4850 0.8400 0.0004 28 1 3.7736 -3.9711 -1.0920 29 1 3.8007 -2.6840 0.1423 30 1 3.6077 -4.3397 1.9417 31 1 4.9637 -4.8053 0.8859 32 1 3.4033 -6.8950 2.5745 33 1 3.4857 -8.0097 1.1892 34 1 5.3366 -5.5906 3.2362 35 1 7.7907 -5.4268 3.2701 36 1 9.1342 -6.6746 1.6307 37 1 10.0507 -8.7248 -0.9737 38 1 5.5355 -8.2689 -0.0748 39 1 1.5327 -5.5231 1.8288 40 1 1.3333 -6.8758 0.6885 41 1 0.1612 -4.7606 -0.0453 42 1 1.3736 -5.3370 -1.2167 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594605590.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:19 Heat of formation + Delta-G solvation = -110.287338 kcal Electronic energy + Delta-G solvation = -26265.061940 eV Core-core repulsion = 22402.100796 eV Total energy + Delta-G solvation = -3862.961143 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.51713 -40.67223 -39.72261 -38.16008 -37.09379 -35.40316 -34.62326 -32.87879 -32.22150 -31.79652 -29.22990 -27.89619 -25.82161 -25.42583 -24.54543 -22.92136 -22.19920 -21.74274 -20.53346 -18.95955 -18.54654 -18.20972 -17.81060 -16.97126 -16.71982 -16.56830 -16.34130 -16.10620 -15.99343 -15.84146 -15.48351 -15.15630 -15.04066 -14.40443 -14.34450 -13.95841 -13.72049 -13.50835 -13.25809 -13.06709 -12.88717 -12.72491 -12.65932 -12.57667 -12.53184 -12.22521 -12.18122 -12.00727 -11.89249 -11.71268 -11.64818 -10.91638 -10.03486 -9.90250 -9.79368 -9.40809 -9.00171 -8.29051 -6.84330 -0.32671 0.33352 1.40140 1.43681 1.50793 1.55237 2.05760 2.23920 2.45626 2.62483 2.82926 3.13365 3.59555 3.62106 3.90321 3.97685 4.03426 4.12480 4.14397 4.22015 4.31517 4.36174 4.41563 4.44351 4.66663 4.69914 4.72293 4.80427 4.86326 4.91517 4.95586 5.00920 5.17880 5.27174 5.37491 5.40553 5.50639 5.58065 5.72977 5.84563 6.00580 6.04984 6.13509 6.41275 6.87588 6.96016 7.42140 8.46224 8.67134 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016950 B = 0.003026 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.518297 B = 9249.745693 C =10009.665543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.028 3.972 3 Si 0.996 3.004 4 H -0.276 1.276 5 H -0.251 1.251 6 H -0.254 1.254 7 C -0.570 4.570 8 H 0.094 0.906 9 C 0.541 3.459 10 O -0.634 6.634 11 N -0.648 5.648 12 C 0.124 3.876 13 C 0.051 3.949 14 N -0.536 5.536 15 C 0.095 3.905 16 C -0.099 4.099 17 C -0.076 4.076 18 C -0.128 4.128 19 C -0.054 4.054 20 C -0.148 4.148 21 C 0.532 3.468 22 O -0.552 6.552 23 O -0.503 6.503 24 C -0.044 4.044 25 C 0.060 3.940 26 C 0.121 3.879 27 H 0.274 0.726 28 H 0.055 0.945 29 H 0.086 0.914 30 H 0.028 0.972 31 H 0.101 0.899 32 H 0.053 0.947 33 H 0.097 0.903 34 H 0.138 0.862 35 H 0.160 0.840 36 H 0.157 0.843 37 H 0.433 0.567 38 H 0.127 0.873 39 H 0.024 0.976 40 H 0.106 0.894 41 H 0.056 0.944 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.863 -14.208 5.904 25.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.187 4.187 3 Si 0.815 3.185 4 H -0.201 1.201 5 H -0.175 1.175 6 H -0.178 1.178 7 C -0.606 4.606 8 H 0.112 0.888 9 C 0.347 3.653 10 O -0.521 6.521 11 N -0.385 5.385 12 C 0.001 3.999 13 C -0.077 4.077 14 N -0.261 5.261 15 C -0.032 4.032 16 C -0.099 4.099 17 C -0.095 4.095 18 C -0.146 4.146 19 C -0.072 4.072 20 C -0.149 4.149 21 C 0.378 3.622 22 O -0.444 6.444 23 O -0.316 6.316 24 C -0.063 4.063 25 C -0.069 4.069 26 C -0.003 4.003 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.104 0.896 30 H 0.047 0.953 31 H 0.119 0.881 32 H 0.071 0.929 33 H 0.115 0.885 34 H 0.155 0.845 35 H 0.178 0.822 36 H 0.175 0.825 37 H 0.295 0.705 38 H 0.145 0.855 39 H 0.042 0.958 40 H 0.124 0.876 41 H 0.075 0.925 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 19.783 -14.234 5.538 24.993 hybrid contribution -0.202 0.466 0.039 0.509 sum 19.582 -13.768 5.577 24.578 Atomic orbital electron populations 1.70189 1.09615 1.28978 1.36569 1.27010 0.95492 1.04992 0.91158 0.85103 0.78262 0.74720 0.80444 1.20080 1.17493 1.17762 1.21471 0.94791 0.89767 1.54551 0.88840 1.18670 0.86552 0.84159 0.75895 1.90533 1.16624 1.87393 1.57561 1.48133 1.06574 1.05529 1.78217 1.21749 0.80080 0.99622 0.98488 1.22612 0.99844 0.88641 0.96639 1.62079 1.03964 1.06085 1.53949 1.21140 0.89893 0.96262 0.95882 1.19666 0.95242 0.98438 0.96551 1.21664 0.95703 0.95276 0.96808 1.21463 0.93220 1.00083 0.99801 1.21706 1.01713 0.92185 0.91625 1.19134 0.92932 1.03682 0.99200 1.21010 0.81304 0.77912 0.81935 1.90891 1.73354 1.40624 1.39545 1.84502 1.18784 1.68933 1.59413 1.21098 0.91927 0.96745 0.96528 1.22343 0.87908 0.99971 0.96671 1.21314 0.96361 0.84145 0.98444 0.91623 0.92640 0.89564 0.95344 0.88120 0.92873 0.88525 0.84464 0.82199 0.82496 0.70499 0.85464 0.95821 0.87633 0.92510 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.87 11.84 21.83 0.26 -50.61 16 2 C 0.03 1.59 5.50 85.30 0.47 2.05 16 3 Si 1.00 40.61 29.56 68.60 2.03 42.64 16 4 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 6 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 7 C -0.57 -32.26 8.86 24.83 0.22 -32.04 16 8 H 0.09 4.69 5.74 -2.91 -0.02 4.68 16 9 C 0.54 32.02 7.63 86.36 0.66 32.68 16 10 O -0.63 -43.27 14.49 -4.31 -0.06 -43.34 16 11 N -0.65 -30.44 3.00 -822.13 -2.47 -32.91 16 12 C 0.12 4.65 6.50 86.50 0.56 5.21 16 13 C 0.05 1.50 4.79 86.54 0.41 1.92 16 14 N -0.54 -14.75 4.77 -898.86 -4.29 -19.04 16 15 C 0.09 1.96 5.42 85.56 0.46 2.43 16 16 C -0.10 -1.90 4.12 -19.90 -0.08 -1.98 16 17 C -0.08 -1.22 7.75 22.33 0.17 -1.04 16 18 C -0.13 -1.65 10.03 22.23 0.22 -1.42 16 19 C -0.05 -0.76 9.62 22.54 0.22 -0.55 16 20 C -0.15 -2.82 5.87 -20.10 -0.12 -2.93 16 21 C 0.53 10.52 8.27 70.33 0.58 11.10 16 22 O -0.55 -14.76 17.13 19.93 0.34 -14.41 16 23 O -0.50 -6.10 12.68 -56.26 -0.71 -6.81 16 24 C -0.04 -0.92 9.24 22.53 0.21 -0.71 16 25 C 0.06 1.84 5.58 86.38 0.48 2.32 16 26 C 0.12 4.93 6.61 86.35 0.57 5.50 16 27 H 0.27 15.35 8.29 -92.71 -0.77 14.58 16 28 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 29 H 0.09 3.32 5.46 -2.39 -0.01 3.31 16 30 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.10 2.52 5.54 -2.38 -0.01 2.51 16 32 H 0.05 1.03 8.02 -2.38 -0.02 1.01 16 33 H 0.10 1.79 8.08 -2.39 -0.02 1.77 16 34 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 35 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 36 H 0.16 1.53 7.61 -2.91 -0.02 1.51 16 37 H 0.43 1.50 9.11 -74.06 -0.67 0.82 16 38 H 0.13 2.91 7.65 -2.91 -0.02 2.88 16 39 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.11 2.62 8.11 -2.39 -0.02 2.60 16 41 H 0.06 2.63 7.04 -2.39 -0.02 2.61 16 42 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -83.28 349.93 0.53 -82.76 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.39 Total: 19.18 kcal Atomic # 6 Polarization: 17.49 SS G_CDS: 5.04 Total: 22.54 kcal Atomic # 7 Polarization: -96.06 SS G_CDS: -6.50 Total: -102.56 kcal Atomic # 8 Polarization: -64.13 SS G_CDS: -0.43 Total: -64.56 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Total: -83.28 0.53 -82.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594605590.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.532 kcal (2) G-P(sol) polarization free energy of solvation -83.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds