Wall clock time and date at job start Tue Mar 31 2020 11:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00120 * 2 1 4 4 H 1.48503 * 109.46896 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47100 * 299.99662 * 3 2 1 6 6 H 1.48501 * 109.47099 * 60.00055 * 3 2 1 7 7 C 1.37879 * 119.99867 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00405 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00066 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.50115 * 59.99796 * 9 7 2 11 11 C 1.53039 * 109.50178 * 180.02562 * 9 7 2 12 12 C 1.53036 * 109.54317 * 181.34790 * 11 9 7 13 13 C 1.53194 * 109.31335 * 298.63587 * 12 11 9 14 14 N 1.46929 * 108.77181 * 54.63197 * 13 12 11 15 15 C 1.34777 * 120.62825 * 126.41828 * 14 13 12 16 16 O 1.21579 * 120.00348 * 174.97519 * 15 14 13 17 17 N 1.34781 * 119.99998 * 354.96808 * 15 14 13 18 18 C 1.39238 * 119.99807 * 185.36039 * 17 15 14 19 19 C 1.38855 * 120.17160 * 34.94193 * 18 17 15 20 20 C 1.38006 * 120.07530 * 179.69780 * 19 18 17 21 21 C 1.38589 * 120.41925 * 0.59037 * 20 19 18 22 22 C 1.37762 * 120.33729 * 359.68538 * 21 20 19 23 23 C 1.39752 * 119.91724 * 0.02562 * 22 21 20 24 24 C 1.47367 * 120.20496 * 180.02562 * 23 22 21 25 25 O 1.21513 * 120.00037 * 175.02293 * 24 23 22 26 26 O 1.34757 * 120.00192 * 355.02400 * 24 23 22 27 27 C 1.46993 * 118.75805 * 306.39272 * 14 13 12 28 28 H 0.97003 * 120.00072 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.45958 * 301.37069 * 11 9 7 30 30 H 1.09003 * 109.46117 * 61.33715 * 11 9 7 31 31 H 1.09006 * 109.49300 * 58.58657 * 12 11 9 32 32 H 1.08998 * 109.50070 * 178.68140 * 12 11 9 33 33 H 1.08994 * 109.58431 * 174.41907 * 13 12 11 34 34 H 1.08996 * 109.58551 * 294.84970 * 13 12 11 35 35 H 0.97005 * 119.99738 * 5.36526 * 17 15 14 36 36 H 1.08006 * 119.96106 * 359.97438 * 19 18 17 37 37 H 1.08001 * 119.79069 * 180.29793 * 20 19 18 38 38 H 1.08007 * 119.82809 * 179.69853 * 21 20 19 39 39 H 1.08009 * 120.03624 * 180.02562 * 22 21 20 40 40 H 0.96695 * 117.00431 * 179.97438 * 26 24 23 41 41 H 1.09005 * 109.57982 * 293.82857 * 27 14 13 42 42 H 1.08999 * 109.62674 * 173.38633 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6244 -2.5576 -0.8895 11 6 2.2448 -3.6629 0.0018 12 6 1.4809 -4.9886 -0.0321 13 6 0.6041 -5.1002 1.2191 14 7 -0.2545 -3.9108 1.3025 15 6 -1.5910 -4.0359 1.4234 16 8 -2.2820 -3.0484 1.5833 17 7 -2.1616 -5.2557 1.3671 18 6 -3.5486 -5.3767 1.3797 19 6 -4.3382 -4.4222 0.7522 20 6 -5.7125 -4.5474 0.7606 21 6 -6.3158 -5.6166 1.4037 22 6 -5.5492 -6.5704 2.0365 23 6 -4.1560 -6.4608 2.0316 24 6 -3.3299 -7.4777 2.7061 25 8 -2.1186 -7.4291 2.6233 26 8 -3.9178 -8.4617 3.4148 27 6 0.3715 -2.5818 1.2521 28 1 -0.4850 0.8401 -0.0004 29 1 2.8882 -3.5920 -0.8753 30 1 2.8548 -3.6185 0.9041 31 1 0.8517 -5.0231 -0.9216 32 1 2.1896 -5.8164 -0.0548 33 1 -0.0156 -5.9943 1.1524 34 1 1.2368 -5.1569 2.1048 35 1 -1.6058 -6.0492 1.3178 36 1 -3.8760 -3.5833 0.2531 37 1 -6.3220 -3.8049 0.2670 38 1 -7.3924 -5.7026 1.4085 39 1 -6.0245 -7.4019 2.5359 40 1 -3.3346 -9.1058 3.8391 41 1 0.9853 -2.4332 2.1405 42 1 -0.4014 -1.8146 1.2069 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594605969.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:30 Heat of formation + Delta-G solvation = -83.675688 kcal Electronic energy + Delta-G solvation = -27097.415300 eV Core-core repulsion = 23235.608125 eV Total energy + Delta-G solvation = -3861.807176 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.01150 -39.84190 -38.54065 -36.87700 -36.32269 -34.44688 -33.30983 -31.83676 -31.44275 -29.93303 -29.26074 -25.16584 -24.96329 -24.36126 -22.74190 -21.87826 -21.35617 -20.10525 -18.86056 -18.28061 -17.90365 -17.41565 -16.90759 -16.16184 -15.84829 -15.32755 -15.07812 -14.70107 -14.41345 -14.35781 -13.90581 -13.78013 -13.51418 -13.24600 -13.07035 -12.67503 -12.54404 -12.23312 -12.13743 -11.93929 -11.76515 -11.53655 -11.01171 -10.92192 -10.76617 -10.50661 -10.39772 -10.27255 -10.13278 -9.90322 -9.55747 -9.13317 -9.08548 -8.96999 -8.44472 -8.15497 -7.69275 -6.00552 -4.08969 0.60780 1.33519 2.43698 2.85257 3.01759 3.30580 3.38742 3.41737 3.51160 3.90611 4.24581 4.43678 4.69688 4.88921 4.96383 5.25995 5.29892 5.31661 5.35762 5.48907 5.51685 5.62624 5.83599 6.00807 6.12011 6.16167 6.19701 6.26528 6.30964 6.42847 6.56347 6.59690 6.64326 6.80321 6.96375 7.01391 7.03130 7.26922 7.41410 7.69435 7.71963 7.88636 8.02304 8.38020 8.40651 8.94199 9.04193 9.56735 11.04896 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018625 B = 0.003683 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.031936 B = 7600.480304 C = 8742.406083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.059 0.941 9 C 0.039 3.961 10 H 0.029 0.971 11 C -0.110 4.110 12 C -0.133 4.133 13 C 0.111 3.889 14 N -0.612 5.612 15 C 0.697 3.303 16 O -0.567 6.567 17 N -0.685 5.685 18 C 0.255 3.745 19 C -0.137 4.137 20 C -0.057 4.057 21 C -0.164 4.164 22 C -0.042 4.042 23 C -0.183 4.183 24 C 0.535 3.465 25 O -0.522 6.522 26 O -0.512 6.512 27 C 0.127 3.873 28 H 0.263 0.737 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.416 0.584 36 H 0.150 0.850 37 H 0.132 0.868 38 H 0.129 0.871 39 H 0.137 0.863 40 H 0.413 0.587 41 H 0.042 0.958 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.818 -16.843 3.454 19.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.077 0.923 9 C 0.020 3.980 10 H 0.047 0.953 11 C -0.148 4.148 12 C -0.172 4.172 13 C -0.013 4.013 14 N -0.348 5.348 15 C 0.399 3.601 16 O -0.443 6.443 17 N -0.339 5.339 18 C 0.155 3.845 19 C -0.157 4.157 20 C -0.076 4.076 21 C -0.184 4.184 22 C -0.061 4.061 23 C -0.187 4.187 24 C 0.382 3.618 25 O -0.413 6.413 26 O -0.323 6.323 27 C 0.007 3.993 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.261 0.739 36 H 0.168 0.832 37 H 0.150 0.850 38 H 0.147 0.853 39 H 0.155 0.845 40 H 0.271 0.729 41 H 0.061 0.939 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.228 -15.656 3.358 19.000 hybrid contribution 1.189 0.006 0.343 1.238 sum -9.038 -15.650 3.701 18.448 Atomic orbital electron populations 1.69890 1.05742 1.26748 1.49392 1.25054 0.94889 0.99281 0.94794 0.86531 0.80053 0.83766 0.77627 1.19790 1.21018 1.20959 1.21110 0.92962 0.90037 1.51745 0.92255 1.19004 0.92648 0.92352 0.94016 0.95255 1.21622 0.98542 0.93954 1.00659 1.21957 0.98635 0.99278 0.97298 1.21596 0.93518 0.87290 0.98875 1.47867 1.03116 1.09454 1.74338 1.15976 0.83075 0.82546 0.78467 1.90937 1.61435 1.36215 1.55729 1.43397 1.04646 1.10162 1.75726 1.17517 0.83271 0.92853 0.90906 1.21354 0.93537 1.00310 1.00547 1.21346 0.94237 0.96510 0.95501 1.21041 1.00144 0.95674 1.01495 1.21169 0.91148 0.98194 0.95565 1.18748 0.93741 0.98511 1.07740 1.20755 0.85993 0.79641 0.75446 1.90736 1.15779 1.74328 1.60453 1.84558 1.45277 1.39185 1.63294 1.22310 0.98441 0.80007 0.98509 0.92696 0.92920 0.93103 0.92135 0.92100 0.91762 0.91704 0.73910 0.83230 0.85018 0.85307 0.84523 0.72886 0.93926 0.85781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.47 11.40 55.43 0.63 -24.84 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.52 -14.03 8.56 -34.44 -0.29 -14.32 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.04 0.96 2.25 -91.65 -0.21 0.76 16 10 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 11 C -0.11 -2.20 5.11 -26.69 -0.14 -2.34 16 12 C -0.13 -2.21 6.08 -26.61 -0.16 -2.37 16 13 C 0.11 1.87 6.43 -3.71 -0.02 1.85 16 14 N -0.61 -12.83 2.97 -178.44 -0.53 -13.37 16 15 C 0.70 14.86 8.02 -86.91 -0.70 14.16 16 16 O -0.57 -13.95 13.57 5.30 0.07 -13.87 16 17 N -0.69 -12.03 4.60 -14.04 -0.06 -12.09 16 18 C 0.26 4.07 6.25 -83.48 -0.52 3.55 16 19 C -0.14 -2.13 8.63 -39.44 -0.34 -2.47 16 20 C -0.06 -0.67 10.03 -39.54 -0.40 -1.07 16 21 C -0.16 -1.64 10.02 -39.63 -0.40 -2.03 16 22 C -0.04 -0.44 9.61 -39.19 -0.38 -0.82 16 23 C -0.18 -2.43 5.89 -104.83 -0.62 -3.04 16 24 C 0.54 6.66 8.25 34.45 0.28 6.94 16 25 O -0.52 -7.61 14.68 -19.28 -0.28 -7.90 16 26 O -0.51 -4.38 12.69 -40.65 -0.52 -4.90 16 27 C 0.13 3.12 5.39 -3.67 -0.02 3.10 16 28 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.96 5.57 -51.93 -0.29 0.67 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.42 6.74 3.78 -40.82 -0.15 6.59 16 36 H 0.15 2.71 6.53 -52.48 -0.34 2.37 16 37 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 39 H 0.14 1.11 7.62 -52.48 -0.40 0.71 16 40 H 0.41 1.68 9.11 45.56 0.42 2.09 16 41 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.12 3.52 5.16 -51.93 -0.27 3.26 16 LS Contribution 343.53 15.07 5.18 5.18 Total: -1.00 -32.88 343.53 -8.92 -41.80 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -4.39 Total: 10.29 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -4.00 Total: 3.53 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: 0.04 Total: -50.30 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -0.73 Total: -26.67 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.88 -8.92 -41.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594605969.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.874 kcal (2) G-P(sol) polarization free energy of solvation -32.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds