Wall clock time and date at job start Tue Mar 31 2020 11:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00120 * 2 1 4 4 H 1.48503 * 109.46896 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47100 * 299.99662 * 3 2 1 6 6 H 1.48501 * 109.47099 * 60.00055 * 3 2 1 7 7 C 1.37879 * 119.99867 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00405 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00066 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.50115 * 59.99796 * 9 7 2 11 11 C 1.53039 * 109.50178 * 180.02562 * 9 7 2 12 12 C 1.53036 * 109.54317 * 181.34790 * 11 9 7 13 13 C 1.53194 * 109.31335 * 298.63587 * 12 11 9 14 14 N 1.46929 * 108.77181 * 54.63197 * 13 12 11 15 15 C 1.34777 * 120.62825 * 126.41828 * 14 13 12 16 16 O 1.21579 * 120.00348 * 174.97519 * 15 14 13 17 17 N 1.34781 * 119.99998 * 354.96808 * 15 14 13 18 18 C 1.39238 * 119.99807 * 185.36039 * 17 15 14 19 19 C 1.38855 * 120.17160 * 34.94193 * 18 17 15 20 20 C 1.38006 * 120.07530 * 179.69780 * 19 18 17 21 21 C 1.38589 * 120.41925 * 0.59037 * 20 19 18 22 22 C 1.37762 * 120.33729 * 359.68538 * 21 20 19 23 23 C 1.39752 * 119.91724 * 0.02562 * 22 21 20 24 24 C 1.47367 * 120.20496 * 180.02562 * 23 22 21 25 25 O 1.21513 * 120.00037 * 175.02293 * 24 23 22 26 26 O 1.34757 * 120.00192 * 355.02400 * 24 23 22 27 27 C 1.46993 * 118.75805 * 306.39272 * 14 13 12 28 28 H 0.97003 * 120.00072 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.45958 * 301.37069 * 11 9 7 30 30 H 1.09003 * 109.46117 * 61.33715 * 11 9 7 31 31 H 1.09006 * 109.49300 * 58.58657 * 12 11 9 32 32 H 1.08998 * 109.50070 * 178.68140 * 12 11 9 33 33 H 1.08994 * 109.58431 * 174.41907 * 13 12 11 34 34 H 1.08996 * 109.58551 * 294.84970 * 13 12 11 35 35 H 0.97005 * 119.99738 * 5.36526 * 17 15 14 36 36 H 1.08006 * 119.96106 * 359.97438 * 19 18 17 37 37 H 1.08001 * 119.79069 * 180.29793 * 20 19 18 38 38 H 1.08007 * 119.82809 * 179.69853 * 21 20 19 39 39 H 1.08009 * 120.03624 * 180.02562 * 22 21 20 40 40 H 0.96695 * 117.00431 * 179.97438 * 26 24 23 41 41 H 1.09005 * 109.57982 * 293.82857 * 27 14 13 42 42 H 1.08999 * 109.62674 * 173.38633 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6244 -2.5576 -0.8895 11 6 2.2448 -3.6629 0.0018 12 6 1.4809 -4.9886 -0.0321 13 6 0.6041 -5.1002 1.2191 14 7 -0.2545 -3.9108 1.3025 15 6 -1.5910 -4.0359 1.4234 16 8 -2.2820 -3.0484 1.5833 17 7 -2.1616 -5.2557 1.3671 18 6 -3.5486 -5.3767 1.3797 19 6 -4.3382 -4.4222 0.7522 20 6 -5.7125 -4.5474 0.7606 21 6 -6.3158 -5.6166 1.4037 22 6 -5.5492 -6.5704 2.0365 23 6 -4.1560 -6.4608 2.0316 24 6 -3.3299 -7.4777 2.7061 25 8 -2.1186 -7.4291 2.6233 26 8 -3.9178 -8.4617 3.4148 27 6 0.3715 -2.5818 1.2521 28 1 -0.4850 0.8401 -0.0004 29 1 2.8882 -3.5920 -0.8753 30 1 2.8548 -3.6185 0.9041 31 1 0.8517 -5.0231 -0.9216 32 1 2.1896 -5.8164 -0.0548 33 1 -0.0156 -5.9943 1.1524 34 1 1.2368 -5.1569 2.1048 35 1 -1.6058 -6.0492 1.3178 36 1 -3.8760 -3.5833 0.2531 37 1 -6.3220 -3.8049 0.2670 38 1 -7.3924 -5.7026 1.4085 39 1 -6.0245 -7.4019 2.5359 40 1 -3.3346 -9.1058 3.8391 41 1 0.9853 -2.4332 2.1405 42 1 -0.4014 -1.8146 1.2069 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594605969.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:29 Heat of formation + Delta-G solvation = -105.235711 kcal Electronic energy + Delta-G solvation = -27098.350213 eV Core-core repulsion = 23235.608125 eV Total energy + Delta-G solvation = -3862.742088 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.22261 -41.08172 -39.68114 -38.43771 -37.22162 -35.89211 -35.15745 -33.52953 -32.43436 -31.63882 -30.50966 -27.09933 -26.41709 -25.49281 -23.94071 -23.52552 -22.38679 -21.65432 -20.44499 -19.37273 -19.12434 -18.67159 -18.24498 -17.92386 -16.88935 -16.73456 -16.55029 -16.26177 -15.73536 -15.60190 -15.29159 -15.17396 -14.97593 -14.57394 -14.37828 -14.26996 -14.07324 -13.70506 -13.59508 -13.05590 -12.91567 -12.70543 -12.60724 -12.53306 -12.32649 -12.23158 -11.91426 -11.78778 -11.67634 -11.44532 -11.18199 -11.00336 -10.86762 -10.54118 -10.09881 -9.61272 -9.12801 -8.11490 -6.28392 -0.37966 0.31477 1.39656 1.41876 1.49174 1.53817 1.57369 2.02234 2.02284 2.41683 2.79976 2.82048 3.17665 3.73777 3.92350 4.02155 4.07005 4.11247 4.20457 4.32269 4.39994 4.52263 4.55194 4.68655 4.74065 4.77019 4.92540 5.04895 5.06170 5.20789 5.22922 5.25604 5.30406 5.43271 5.47420 5.51106 5.56603 5.57916 5.83483 5.91122 5.92541 6.06137 6.32350 6.82442 6.87277 6.93785 7.40693 7.43867 8.92477 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018625 B = 0.003683 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.031936 B = 7600.480304 C = 8742.406083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.010 3.990 3 Si 0.959 3.041 4 H -0.260 1.260 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.535 4.535 8 H 0.064 0.936 9 C 0.038 3.962 10 H -0.011 1.011 11 C -0.104 4.104 12 C -0.124 4.124 13 C 0.108 3.892 14 N -0.619 5.619 15 C 0.692 3.308 16 O -0.612 6.612 17 N -0.674 5.674 18 C 0.215 3.785 19 C -0.165 4.165 20 C -0.055 4.055 21 C -0.145 4.145 22 C -0.030 4.030 23 C -0.187 4.187 24 C 0.539 3.461 25 O -0.549 6.549 26 O -0.495 6.495 27 C 0.143 3.857 28 H 0.260 0.740 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.421 0.579 36 H 0.108 0.892 37 H 0.153 0.847 38 H 0.173 0.827 39 H 0.173 0.827 40 H 0.435 0.565 41 H 0.036 0.964 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.607 -19.653 4.341 22.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.189 4.189 3 Si 0.784 3.216 4 H -0.184 1.184 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.573 4.573 8 H 0.082 0.918 9 C 0.019 3.981 10 H 0.007 0.993 11 C -0.141 4.141 12 C -0.162 4.162 13 C -0.014 4.014 14 N -0.354 5.354 15 C 0.394 3.606 16 O -0.492 6.492 17 N -0.329 5.329 18 C 0.116 3.884 19 C -0.186 4.186 20 C -0.073 4.073 21 C -0.164 4.164 22 C -0.048 4.048 23 C -0.191 4.191 24 C 0.386 3.614 25 O -0.442 6.442 26 O -0.308 6.308 27 C 0.020 3.980 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.124 0.876 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.267 0.733 36 H 0.126 0.874 37 H 0.171 0.829 38 H 0.191 0.809 39 H 0.190 0.810 40 H 0.297 0.703 41 H 0.055 0.945 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.024 -18.560 4.253 22.002 hybrid contribution 1.262 0.767 0.099 1.480 sum -9.762 -17.793 4.353 20.757 Atomic orbital electron populations 1.70089 1.07441 1.27239 1.50584 1.25901 0.95567 1.02954 0.94511 0.85487 0.79281 0.79370 0.77418 1.18409 1.20788 1.20912 1.21524 0.93341 0.91299 1.51132 0.91804 1.18932 0.93076 0.93946 0.92153 0.99319 1.21507 0.97650 0.93778 1.01214 1.21911 0.98902 0.98739 0.96683 1.21877 0.93544 0.86236 0.99767 1.47772 1.03646 1.09487 1.74495 1.16168 0.82988 0.83271 0.78168 1.90892 1.62489 1.38085 1.57735 1.43096 1.05664 1.08545 1.75578 1.17807 0.82379 0.94799 0.93388 1.21194 0.95484 0.99793 1.02119 1.21639 0.92621 0.97772 0.95314 1.21529 1.02219 0.93746 0.98870 1.21641 0.89802 0.98942 0.94458 1.18954 0.95179 0.97744 1.07245 1.20613 0.85413 0.79990 0.75361 1.90715 1.16904 1.75110 1.61484 1.84492 1.45283 1.38639 1.62415 1.21735 0.96986 0.81146 0.98088 0.93099 0.92487 0.92287 0.93025 0.87620 0.89519 0.90110 0.73266 0.87384 0.82919 0.80926 0.80977 0.70304 0.94533 0.90167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.10 11.40 21.45 0.24 -55.85 16 2 C 0.01 0.57 5.30 84.66 0.45 1.02 16 3 Si 0.96 44.65 29.54 68.60 2.03 46.68 16 4 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 7 C -0.53 -29.75 8.56 25.60 0.22 -29.53 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.04 1.98 2.25 -11.46 -0.03 1.95 16 10 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 11 C -0.10 -4.12 5.11 30.62 0.16 -3.96 16 12 C -0.12 -3.95 6.08 30.67 0.19 -3.77 16 13 C 0.11 3.56 6.43 86.36 0.56 4.12 16 14 N -0.62 -27.16 2.97 -836.74 -2.49 -29.65 16 15 C 0.69 31.46 8.02 179.05 1.44 32.90 16 16 O -0.61 -32.87 13.57 -3.96 -0.05 -32.92 16 17 N -0.67 -24.64 4.60 -316.60 -1.46 -26.10 16 18 C 0.21 7.05 6.25 38.62 0.24 7.29 16 19 C -0.16 -5.44 8.63 22.36 0.19 -5.25 16 20 C -0.05 -1.24 10.03 22.30 0.22 -1.02 16 21 C -0.15 -2.34 10.02 22.24 0.22 -2.12 16 22 C -0.03 -0.52 9.61 22.52 0.22 -0.31 16 23 C -0.19 -4.67 5.89 -20.00 -0.12 -4.79 16 24 C 0.54 12.26 8.25 70.23 0.58 12.84 16 25 O -0.55 -15.28 14.68 19.79 0.29 -14.99 16 26 O -0.49 -6.65 12.69 -56.68 -0.72 -7.37 16 27 C 0.14 7.42 5.39 86.35 0.47 7.89 16 28 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 29 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 30 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 32 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.09 2.49 5.57 -2.39 -0.01 2.47 16 34 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.42 13.82 3.78 -92.70 -0.35 13.46 16 36 H 0.11 4.42 6.53 -2.91 -0.02 4.40 16 37 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 38 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 39 H 0.17 1.81 7.62 -2.91 -0.02 1.79 16 40 H 0.43 1.90 9.11 -74.06 -0.67 1.22 16 41 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 42 H 0.08 4.93 5.16 -2.39 -0.01 4.92 16 Total: -1.00 -78.79 343.53 2.90 -75.90 By element: Atomic # 1 Polarization: 26.99 SS G_CDS: 0.05 Total: 27.04 kcal Atomic # 6 Polarization: 12.26 SS G_CDS: 5.00 Total: 17.26 kcal Atomic # 7 Polarization: -107.90 SS G_CDS: -3.70 Total: -111.60 kcal Atomic # 8 Polarization: -54.79 SS G_CDS: -0.48 Total: -55.28 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -78.79 2.90 -75.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594605969.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.341 kcal (2) G-P(sol) polarization free energy of solvation -78.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds