Wall clock time and date at job start Tue Mar 31 2020 12:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99857 * 2 1 4 4 H 1.48505 * 109.47004 * 269.99815 * 3 2 1 5 5 H 1.48490 * 109.47233 * 30.00118 * 3 2 1 6 6 H 1.48501 * 109.46757 * 150.00292 * 3 2 1 7 7 C 1.37875 * 120.00052 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99846 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99824 * 359.72083 * 7 2 1 10 10 H 1.09001 * 109.50191 * 60.34703 * 9 7 2 11 11 C 1.53043 * 109.49694 * 180.44000 * 9 7 2 12 12 C 1.53040 * 109.53826 * 181.31816 * 11 9 7 13 13 C 1.53201 * 109.31182 * 298.63273 * 12 11 9 14 14 N 1.46917 * 108.77244 * 54.63632 * 13 12 11 15 15 C 1.34783 * 120.63163 * 126.41620 * 14 13 12 16 16 O 1.21584 * 120.00117 * 175.79789 * 15 14 13 17 17 N 1.34781 * 119.99530 * 355.79079 * 15 14 13 18 18 C 1.39975 * 119.99733 * 187.32442 * 17 15 14 19 19 C 1.38994 * 119.99495 * 33.19599 * 18 17 15 20 20 C 1.38229 * 120.23011 * 179.97438 * 19 18 17 21 21 C 1.38001 * 120.23090 * 359.97438 * 20 19 18 22 22 C 1.39626 * 119.98726 * 0.02562 * 21 20 19 23 23 C 1.47741 * 120.11433 * 179.97438 * 22 21 20 24 24 O 1.21475 * 119.99915 * 179.97438 * 23 22 21 25 25 O 1.34714 * 120.00342 * 359.97438 * 23 22 21 26 26 C 1.38576 * 119.99826 * 212.92166 * 18 17 15 27 27 C 1.46925 * 118.74283 * 306.39008 * 14 13 12 28 28 H 0.97004 * 120.00145 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.46032 * 301.33587 * 11 9 7 30 30 H 1.09003 * 109.46147 * 61.29332 * 11 9 7 31 31 H 1.09004 * 109.49870 * 178.68588 * 12 11 9 32 32 H 1.08996 * 109.50102 * 58.58314 * 12 11 9 33 33 H 1.09001 * 109.58278 * 294.84609 * 13 12 11 34 34 H 1.09000 * 109.58191 * 174.42636 * 13 12 11 35 35 H 0.96998 * 119.99695 * 7.32246 * 17 15 14 36 36 H 1.07999 * 119.88748 * 359.97438 * 19 18 17 37 37 H 1.08000 * 119.88147 * 180.02562 * 20 19 18 38 38 H 1.07996 * 120.00670 * 180.02562 * 21 20 19 39 39 H 0.96702 * 117.00220 * 180.02562 * 25 23 22 40 40 H 1.07998 * 120.10995 * 359.97438 * 26 18 17 41 41 H 1.08999 * 109.58517 * 293.82556 * 27 14 13 42 42 H 1.09004 * 109.70822 * 173.46548 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 0.0052 10 1 0.6251 -2.5618 -0.8849 11 6 2.2450 -3.6628 0.0144 12 6 1.4811 -4.9886 -0.0129 13 6 0.6027 -5.0931 1.2380 14 7 -0.2560 -3.9034 1.3135 15 6 -1.5927 -4.0278 1.4335 16 8 -2.2853 -3.0381 1.5718 17 7 -2.1614 -5.2492 1.4000 18 6 -3.5555 -5.3714 1.3701 19 6 -4.3228 -4.4168 0.7128 20 6 -5.6998 -4.5330 0.6797 21 6 -6.3223 -5.5979 1.2986 22 6 -5.5606 -6.5622 1.9616 23 6 -6.2242 -7.7031 2.6256 24 8 -5.5595 -8.5411 3.2014 25 8 -7.5663 -7.8141 2.5926 26 6 -4.1702 -6.4471 1.9908 27 6 0.3701 -2.5754 1.2562 28 1 -0.4850 0.8401 0.0004 29 1 2.8894 -3.5969 -0.8623 30 1 2.8540 -3.6130 0.9171 31 1 2.1899 -5.8166 -0.0299 32 1 0.8530 -5.0284 -0.9028 33 1 1.2345 -5.1448 2.1247 34 1 -0.0168 -5.9877 1.1756 35 1 -1.6047 -6.0435 1.3967 36 1 -3.8414 -3.5814 0.2262 37 1 -6.2904 -3.7883 0.1671 38 1 -7.3983 -5.6853 1.2702 39 1 -7.9549 -8.5773 3.0415 40 1 -3.5754 -7.1924 2.4979 41 1 0.9828 -2.4217 2.1445 42 1 -0.4016 -1.8071 1.2071 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594606580.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:31 Heat of formation + Delta-G solvation = -87.405187 kcal Electronic energy + Delta-G solvation = -26321.727698 eV Core-core repulsion = 22459.758799 eV Total energy + Delta-G solvation = -3861.968899 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.78498 -40.17494 -38.59985 -36.89782 -36.30169 -34.63927 -33.37311 -31.91973 -31.31257 -30.02278 -29.33057 -25.15938 -24.96027 -24.71967 -22.44747 -21.89276 -21.69343 -20.08012 -18.95254 -18.55318 -17.89006 -17.49395 -16.30311 -16.18289 -15.83663 -15.79284 -15.28739 -14.81761 -14.46400 -14.37464 -13.86446 -13.80897 -13.55895 -13.45694 -13.17614 -12.73819 -12.61637 -12.30245 -12.07747 -11.93559 -11.79700 -11.53271 -11.04452 -10.97337 -10.85536 -10.57090 -10.47952 -10.35568 -10.22822 -9.96059 -9.64544 -9.18130 -9.10219 -9.03079 -8.47500 -8.19982 -7.76226 -6.03923 -4.12553 0.60467 1.23998 2.40645 2.66554 3.03446 3.28995 3.36478 3.38409 3.47174 3.86071 4.13428 4.40420 4.71232 4.86362 5.01293 5.11698 5.15989 5.26468 5.32208 5.39730 5.52470 5.53212 5.75285 5.89104 6.06345 6.08046 6.17332 6.23638 6.23943 6.33076 6.48606 6.51762 6.57421 6.72681 6.90402 6.95239 6.97384 7.20322 7.31504 7.65260 7.66107 7.83884 7.97894 8.31530 8.34649 8.89933 8.97131 9.53334 11.01345 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022393 B = 0.002935 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.112900 B = 9538.409826 C =10489.729005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.040 3.960 10 H 0.029 0.971 11 C -0.111 4.111 12 C -0.133 4.133 13 C 0.111 3.889 14 N -0.614 5.614 15 C 0.699 3.301 16 O -0.565 6.565 17 N -0.696 5.696 18 C 0.172 3.828 19 C -0.081 4.081 20 C -0.112 4.112 21 C -0.086 4.086 22 C -0.115 4.115 23 C 0.531 3.469 24 O -0.518 6.518 25 O -0.512 6.512 26 C -0.093 4.093 27 C 0.127 3.873 28 H 0.264 0.736 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.404 0.596 36 H 0.148 0.852 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.413 0.587 40 H 0.137 0.863 41 H 0.042 0.958 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.085 -15.229 2.244 18.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.077 0.923 9 C 0.021 3.979 10 H 0.047 0.953 11 C -0.148 4.148 12 C -0.172 4.172 13 C -0.013 4.013 14 N -0.350 5.350 15 C 0.401 3.599 16 O -0.441 6.441 17 N -0.346 5.346 18 C 0.075 3.925 19 C -0.101 4.101 20 C -0.130 4.130 21 C -0.105 4.105 22 C -0.117 4.117 23 C 0.376 3.624 24 O -0.407 6.407 25 O -0.323 6.323 26 C -0.114 4.114 27 C 0.007 3.993 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.242 0.758 36 H 0.166 0.834 37 H 0.153 0.847 38 H 0.154 0.846 39 H 0.271 0.729 40 H 0.155 0.845 41 H 0.061 0.939 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.264 -14.189 2.295 17.662 hybrid contribution 0.599 -0.102 0.357 0.705 sum -9.665 -14.291 2.652 17.455 Atomic orbital electron populations 1.69871 1.05726 1.26906 1.49224 1.25051 0.94903 0.99288 0.94764 0.86585 0.79821 0.83453 0.78102 1.20678 1.21154 1.19914 1.21065 0.92930 0.90045 1.51948 0.92312 1.18992 0.92606 0.92340 0.94003 0.95280 1.21628 0.98572 0.93942 1.00708 1.21949 0.98620 0.99320 0.97266 1.21586 0.93456 0.87141 0.99076 1.47873 1.03127 1.09428 1.74565 1.15933 0.82954 0.82598 0.78438 1.90948 1.61289 1.35987 1.55870 1.43016 1.04394 1.08826 1.78369 1.17326 0.82970 0.95695 0.96465 1.21667 0.93846 0.98876 0.95754 1.21073 0.94160 0.97964 0.99847 1.21354 1.00241 0.93064 0.95818 1.18621 0.92789 0.95629 1.04632 1.20912 0.80040 0.84656 0.76769 1.90882 1.65677 1.42082 1.42098 1.84565 1.22679 1.51845 1.73256 1.20835 0.93006 0.99045 0.98545 1.22300 0.98489 0.80046 0.98494 0.92606 0.92903 0.93089 0.92103 0.92071 0.91640 0.92139 0.75804 0.83444 0.84721 0.84609 0.72884 0.84471 0.93933 0.85725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.97 11.38 55.43 0.63 -24.34 16 2 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.52 -13.73 8.57 -34.44 -0.30 -14.02 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.04 0.95 2.25 -91.65 -0.21 0.74 16 10 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 11 C -0.11 -2.10 5.11 -26.69 -0.14 -2.23 16 12 C -0.13 -2.00 6.08 -26.61 -0.16 -2.16 16 13 C 0.11 1.61 6.42 -3.71 -0.02 1.59 16 14 N -0.61 -11.74 2.97 -178.50 -0.53 -12.27 16 15 C 0.70 13.55 8.00 -86.91 -0.70 12.86 16 16 O -0.57 -13.21 13.54 5.29 0.07 -13.14 16 17 N -0.70 -10.33 5.25 -14.25 -0.07 -10.40 16 18 C 0.17 2.48 6.26 -83.73 -0.52 1.95 16 19 C -0.08 -1.20 8.65 -39.30 -0.34 -1.54 16 20 C -0.11 -1.32 10.02 -39.67 -0.40 -1.72 16 21 C -0.09 -0.92 9.61 -39.15 -0.38 -1.30 16 22 C -0.11 -1.37 5.87 -105.01 -0.62 -1.98 16 23 C 0.53 5.97 8.27 34.61 0.29 6.26 16 24 O -0.52 -7.13 17.13 -19.25 -0.33 -7.46 16 25 O -0.51 -4.01 12.68 -40.53 -0.51 -4.52 16 26 C -0.09 -1.18 9.51 -38.97 -0.37 -1.55 16 27 C 0.13 2.96 5.38 -3.71 -0.02 2.94 16 28 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.67 5.58 -51.93 -0.29 0.38 16 35 H 0.40 4.72 6.29 -40.82 -0.26 4.46 16 36 H 0.15 2.56 6.46 -52.49 -0.34 2.23 16 37 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.14 1.15 7.60 -52.49 -0.40 0.76 16 39 H 0.41 1.33 9.11 45.56 0.42 1.74 16 40 H 0.14 1.61 7.65 -52.49 -0.40 1.21 16 41 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.12 3.42 5.14 -51.93 -0.27 3.15 16 LS Contribution 348.06 15.07 5.25 5.25 Total: -1.00 -32.85 348.06 -8.96 -41.81 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -4.46 Total: 7.79 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -3.97 Total: 1.44 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: 0.03 Total: -47.02 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.77 Total: -25.12 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.85 -8.96 -41.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594606580.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.596 kcal (2) G-P(sol) polarization free energy of solvation -32.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds