Wall clock time and date at job start Tue Mar 31 2020 12:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99857 * 2 1 4 4 H 1.48505 * 109.47004 * 269.99815 * 3 2 1 5 5 H 1.48490 * 109.47233 * 30.00118 * 3 2 1 6 6 H 1.48501 * 109.46757 * 150.00292 * 3 2 1 7 7 C 1.37875 * 120.00052 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99846 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99824 * 359.72083 * 7 2 1 10 10 H 1.09001 * 109.50191 * 60.34703 * 9 7 2 11 11 C 1.53043 * 109.49694 * 180.44000 * 9 7 2 12 12 C 1.53040 * 109.53826 * 181.31816 * 11 9 7 13 13 C 1.53201 * 109.31182 * 298.63273 * 12 11 9 14 14 N 1.46917 * 108.77244 * 54.63632 * 13 12 11 15 15 C 1.34783 * 120.63163 * 126.41620 * 14 13 12 16 16 O 1.21584 * 120.00117 * 175.79789 * 15 14 13 17 17 N 1.34781 * 119.99530 * 355.79079 * 15 14 13 18 18 C 1.39975 * 119.99733 * 187.32442 * 17 15 14 19 19 C 1.38994 * 119.99495 * 33.19599 * 18 17 15 20 20 C 1.38229 * 120.23011 * 179.97438 * 19 18 17 21 21 C 1.38001 * 120.23090 * 359.97438 * 20 19 18 22 22 C 1.39626 * 119.98726 * 0.02562 * 21 20 19 23 23 C 1.47741 * 120.11433 * 179.97438 * 22 21 20 24 24 O 1.21475 * 119.99915 * 179.97438 * 23 22 21 25 25 O 1.34714 * 120.00342 * 359.97438 * 23 22 21 26 26 C 1.38576 * 119.99826 * 212.92166 * 18 17 15 27 27 C 1.46925 * 118.74283 * 306.39008 * 14 13 12 28 28 H 0.97004 * 120.00145 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.46032 * 301.33587 * 11 9 7 30 30 H 1.09003 * 109.46147 * 61.29332 * 11 9 7 31 31 H 1.09004 * 109.49870 * 178.68588 * 12 11 9 32 32 H 1.08996 * 109.50102 * 58.58314 * 12 11 9 33 33 H 1.09001 * 109.58278 * 294.84609 * 13 12 11 34 34 H 1.09000 * 109.58191 * 174.42636 * 13 12 11 35 35 H 0.96998 * 119.99695 * 7.32246 * 17 15 14 36 36 H 1.07999 * 119.88748 * 359.97438 * 19 18 17 37 37 H 1.08000 * 119.88147 * 180.02562 * 20 19 18 38 38 H 1.07996 * 120.00670 * 180.02562 * 21 20 19 39 39 H 0.96702 * 117.00220 * 180.02562 * 25 23 22 40 40 H 1.07998 * 120.10995 * 359.97438 * 26 18 17 41 41 H 1.08999 * 109.58517 * 293.82556 * 27 14 13 42 42 H 1.09004 * 109.70822 * 173.46548 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 0.0052 10 1 0.6251 -2.5618 -0.8849 11 6 2.2450 -3.6628 0.0144 12 6 1.4811 -4.9886 -0.0129 13 6 0.6027 -5.0931 1.2380 14 7 -0.2560 -3.9034 1.3135 15 6 -1.5927 -4.0278 1.4335 16 8 -2.2853 -3.0381 1.5718 17 7 -2.1614 -5.2492 1.4000 18 6 -3.5555 -5.3714 1.3701 19 6 -4.3228 -4.4168 0.7128 20 6 -5.6998 -4.5330 0.6797 21 6 -6.3223 -5.5979 1.2986 22 6 -5.5606 -6.5622 1.9616 23 6 -6.2242 -7.7031 2.6256 24 8 -5.5595 -8.5411 3.2014 25 8 -7.5663 -7.8141 2.5926 26 6 -4.1702 -6.4471 1.9908 27 6 0.3701 -2.5754 1.2562 28 1 -0.4850 0.8401 0.0004 29 1 2.8894 -3.5969 -0.8623 30 1 2.8540 -3.6130 0.9171 31 1 2.1899 -5.8166 -0.0299 32 1 0.8530 -5.0284 -0.9028 33 1 1.2345 -5.1448 2.1247 34 1 -0.0168 -5.9877 1.1756 35 1 -1.6047 -6.0435 1.3967 36 1 -3.8414 -3.5814 0.2262 37 1 -6.2904 -3.7883 0.1671 38 1 -7.3983 -5.6853 1.2702 39 1 -7.9549 -8.5773 3.0415 40 1 -3.5754 -7.1924 2.4979 41 1 0.9828 -2.4217 2.1445 42 1 -0.4016 -1.8071 1.2071 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594606580.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:31 Heat of formation + Delta-G solvation = -109.085289 kcal Electronic energy + Delta-G solvation = -26322.667818 eV Core-core repulsion = 22459.758799 eV Total energy + Delta-G solvation = -3862.909019 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.96961 -41.23977 -39.75092 -38.37489 -37.08466 -36.01708 -35.16175 -33.50886 -32.31369 -31.61709 -30.56964 -27.05627 -26.26276 -25.84829 -23.66797 -23.34227 -22.75235 -21.46457 -20.39620 -19.68124 -18.98289 -18.66972 -18.16781 -17.32361 -16.96641 -16.67686 -16.60660 -16.51760 -15.92763 -15.68793 -15.23894 -15.07899 -14.80331 -14.55818 -14.36952 -14.30809 -14.15194 -13.71777 -13.56110 -13.05068 -12.88549 -12.70977 -12.58925 -12.46713 -12.28143 -12.23291 -11.87846 -11.79160 -11.64588 -11.50751 -11.23416 -10.97576 -10.86008 -10.51134 -10.11478 -9.58318 -9.10656 -8.10344 -6.26785 -0.36770 0.23519 1.39552 1.42584 1.44844 1.52719 1.56002 2.04330 2.12240 2.42274 2.77908 2.86000 3.18843 3.80341 3.95185 3.97750 4.08774 4.12594 4.18129 4.24075 4.35676 4.51405 4.58940 4.72078 4.78431 4.81328 4.83030 5.09937 5.11000 5.17957 5.25272 5.27345 5.30668 5.34733 5.44364 5.54593 5.56712 5.60382 5.86183 5.86902 5.93580 6.09031 6.34821 6.85007 6.92709 6.97172 7.42718 7.48777 8.92873 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022393 B = 0.002935 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.112900 B = 9538.409826 C =10489.729005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.011 3.989 3 Si 0.956 3.044 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.535 4.535 8 H 0.062 0.938 9 C 0.039 3.961 10 H -0.012 1.012 11 C -0.106 4.106 12 C -0.125 4.125 13 C 0.105 3.895 14 N -0.619 5.619 15 C 0.695 3.305 16 O -0.615 6.615 17 N -0.677 5.677 18 C 0.150 3.850 19 C -0.105 4.105 20 C -0.109 4.109 21 C -0.068 4.068 22 C -0.121 4.121 23 C 0.541 3.459 24 O -0.546 6.546 25 O -0.499 6.499 26 C -0.086 4.086 27 C 0.142 3.858 28 H 0.260 0.740 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.105 0.895 32 H 0.051 0.949 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.420 0.580 36 H 0.111 0.889 37 H 0.156 0.844 38 H 0.167 0.833 39 H 0.435 0.565 40 H 0.148 0.852 41 H 0.036 0.964 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.456 -17.782 2.793 20.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.189 4.189 3 Si 0.781 3.219 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.574 4.574 8 H 0.080 0.920 9 C 0.020 3.980 10 H 0.006 0.994 11 C -0.144 4.144 12 C -0.163 4.163 13 C -0.017 4.017 14 N -0.354 5.354 15 C 0.397 3.603 16 O -0.494 6.494 17 N -0.329 5.329 18 C 0.055 3.945 19 C -0.126 4.126 20 C -0.127 4.127 21 C -0.087 4.087 22 C -0.123 4.123 23 C 0.387 3.613 24 O -0.438 6.438 25 O -0.313 6.313 26 C -0.107 4.107 27 C 0.020 3.980 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.124 0.876 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.118 0.882 35 H 0.261 0.739 36 H 0.129 0.871 37 H 0.174 0.826 38 H 0.185 0.815 39 H 0.298 0.702 40 H 0.166 0.834 41 H 0.054 0.946 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.643 -16.829 2.840 20.114 hybrid contribution 0.575 0.631 0.174 0.872 sum -10.068 -16.198 3.014 19.309 Atomic orbital electron populations 1.70069 1.07309 1.27228 1.50542 1.25867 0.95566 1.02808 0.94632 0.85591 0.78809 0.79287 0.78201 1.20159 1.21417 1.18709 1.21507 0.93297 0.91457 1.51116 0.91983 1.18917 0.93076 0.93783 0.92274 0.99390 1.21520 0.97690 0.94138 1.01029 1.21904 0.98977 0.98336 0.97095 1.21960 0.93686 0.86407 0.99648 1.47738 1.03660 1.09452 1.74565 1.16091 0.82817 0.83308 0.78092 1.90911 1.62458 1.38118 1.57925 1.42646 1.04972 1.07663 1.77572 1.17448 0.82514 0.96673 0.97903 1.21557 0.95454 0.98449 0.97098 1.21294 0.92922 0.98829 0.99654 1.21646 1.01608 0.91577 0.93819 1.18849 0.92685 0.96266 1.04519 1.20659 0.80892 0.83786 0.75997 1.90882 1.66581 1.42991 1.43364 1.84504 1.20647 1.53076 1.73081 1.20886 0.93707 0.98292 0.97854 1.21668 0.96950 0.81510 0.97880 0.93138 0.92915 0.92360 0.87647 0.93029 0.89767 0.88185 0.73894 0.87061 0.82637 0.81507 0.70247 0.83411 0.94565 0.90295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.77 11.38 21.45 0.24 -54.53 16 2 C 0.01 0.60 5.30 84.65 0.45 1.05 16 3 Si 0.96 43.89 29.54 68.60 2.03 45.92 16 4 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 6 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.54 -29.03 8.57 25.60 0.22 -28.81 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 9 C 0.04 1.92 2.25 -11.46 -0.03 1.89 16 10 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 11 C -0.11 -3.94 5.11 30.62 0.16 -3.79 16 12 C -0.13 -3.47 6.08 30.67 0.19 -3.28 16 13 C 0.10 2.80 6.42 86.37 0.55 3.35 16 14 N -0.62 -24.09 2.97 -836.90 -2.49 -26.58 16 15 C 0.69 27.96 8.00 179.05 1.43 29.40 16 16 O -0.61 -30.78 13.54 -3.98 -0.05 -30.83 16 17 N -0.68 -20.03 5.25 -317.27 -1.67 -21.69 16 18 C 0.15 4.33 6.26 38.10 0.24 4.57 16 19 C -0.10 -3.22 8.65 22.45 0.19 -3.03 16 20 C -0.11 -2.47 10.02 22.21 0.22 -2.24 16 21 C -0.07 -1.28 9.61 22.55 0.22 -1.06 16 22 C -0.12 -2.61 5.87 -20.11 -0.12 -2.73 16 23 C 0.54 10.62 8.27 70.33 0.58 11.20 16 24 O -0.55 -13.79 17.13 19.92 0.34 -13.45 16 25 O -0.50 -5.94 12.68 -56.24 -0.71 -6.66 16 26 C -0.09 -2.07 9.51 22.67 0.22 -1.86 16 27 C 0.14 6.98 5.38 86.36 0.46 7.44 16 28 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 29 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 30 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.11 2.08 8.14 -2.38 -0.02 2.06 16 32 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.10 1.88 5.58 -2.39 -0.01 1.86 16 35 H 0.42 9.08 6.29 -92.71 -0.58 8.50 16 36 H 0.11 4.25 6.46 -2.91 -0.02 4.23 16 37 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 38 H 0.17 2.13 7.60 -2.91 -0.02 2.11 16 39 H 0.44 1.14 9.11 -74.06 -0.67 0.47 16 40 H 0.15 3.19 7.65 -2.91 -0.02 3.17 16 41 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.08 4.65 5.14 -2.39 -0.01 4.64 16 Total: -1.00 -77.40 348.06 2.50 -74.89 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: -0.18 Total: 20.82 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: 4.99 Total: 12.11 kcal Atomic # 7 Polarization: -98.90 SS G_CDS: -3.91 Total: -102.80 kcal Atomic # 8 Polarization: -50.51 SS G_CDS: -0.43 Total: -50.93 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -77.40 2.50 -74.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594606580.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.194 kcal (2) G-P(sol) polarization free energy of solvation -77.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds