Wall clock time and date at job start Tue Mar 31 2020 12:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00224 * 2 1 4 4 H 1.48504 * 109.46889 * 239.99276 * 3 2 1 5 5 H 1.48493 * 109.47168 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47257 * 119.99309 * 3 2 1 7 7 C 1.37882 * 119.99676 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99696 * 180.02562 * 7 2 1 9 9 C 1.50692 * 119.99990 * 0.02562 * 7 2 1 10 10 H 1.08994 * 110.82001 * 56.66312 * 9 7 2 11 11 C 1.54894 * 110.75624 * 293.32401 * 9 7 2 12 12 C 1.54262 * 104.19621 * 203.74321 * 11 9 7 13 13 C 1.53881 * 106.59949 * 23.61124 * 12 11 9 14 14 H 1.08997 * 110.07335 * 240.69281 * 13 12 11 15 15 N 1.46498 * 110.02909 * 119.28289 * 13 12 11 16 16 C 1.34778 * 119.99869 * 87.83834 * 15 13 12 17 17 O 1.21588 * 120.00142 * 359.97438 * 16 15 13 18 18 N 1.34786 * 120.00004 * 179.97438 * 16 15 13 19 19 C 1.39966 * 119.99931 * 175.38604 * 18 16 15 20 20 C 1.38997 * 119.99715 * 214.82636 * 19 18 16 21 21 C 1.38223 * 120.23632 * 179.76623 * 20 19 18 22 22 C 1.38006 * 120.22613 * 0.51187 * 21 20 19 23 23 C 1.39629 * 119.99036 * 359.74971 * 22 21 20 24 24 C 1.47744 * 120.11754 * 180.02562 * 23 22 21 25 25 O 1.21467 * 120.00183 * 179.97438 * 24 23 22 26 26 O 1.34712 * 119.99565 * 359.97200 * 24 23 22 27 27 C 1.38581 * 120.00092 * 35.10618 * 19 18 16 28 28 C 1.54266 * 106.59572 * 359.97438 * 13 12 11 29 29 H 0.97006 * 119.99840 * 0.02562 * 1 2 3 30 30 H 1.08997 * 110.48978 * 322.42560 * 11 9 7 31 31 H 1.08997 * 110.48475 * 85.06748 * 11 9 7 32 32 H 1.09004 * 110.03428 * 264.32932 * 12 11 9 33 33 H 1.09001 * 110.03680 * 142.89730 * 12 11 9 34 34 H 0.96998 * 120.00441 * 267.83142 * 15 13 12 35 35 H 0.97001 * 119.99685 * 355.38704 * 18 16 15 36 36 H 1.07998 * 119.87860 * 0.02562 * 20 19 18 37 37 H 1.07997 * 119.88804 * 180.24178 * 21 20 19 38 38 H 1.08001 * 120.00646 * 179.72537 * 22 21 20 39 39 H 0.96709 * 116.99662 * 180.02562 * 26 24 23 40 40 H 1.08003 * 120.10992 * 359.97438 * 27 19 18 41 41 H 1.08998 * 110.48382 * 217.70920 * 28 13 12 42 42 H 1.09004 * 110.59561 * 95.12625 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 1 0.5727 -2.5548 -0.8509 11 6 0.4793 -2.6874 1.3303 12 6 0.2960 -4.2146 1.4484 13 6 1.4096 -4.8576 0.6032 14 1 0.9739 -5.4600 -0.1938 15 7 2.2652 -5.6913 1.4513 16 6 1.9459 -6.9826 1.6682 17 8 0.9475 -7.4555 1.1603 18 7 2.7333 -7.7497 2.4480 19 6 2.3519 -9.0617 2.7520 20 6 2.6522 -9.6019 3.9970 21 6 2.2737 -10.8953 4.3042 22 6 1.6043 -11.6630 3.3730 23 6 1.3026 -11.1317 2.1175 24 6 0.5855 -11.9509 1.1187 25 8 0.3236 -11.4864 0.0273 26 8 0.2221 -13.2129 1.4185 27 6 1.6801 -9.8240 1.8097 28 6 2.2304 -3.6987 0.0006 29 1 -0.4850 0.8401 -0.0004 30 1 1.0642 -2.3075 2.1679 31 1 -0.4891 -2.1895 1.2832 32 1 -0.6809 -4.5044 1.0614 33 1 0.3921 -4.5229 2.4894 34 1 3.0615 -5.3140 1.8567 35 1 3.5642 -7.3925 2.7986 36 1 3.1795 -9.0074 4.7284 37 1 2.5065 -11.3081 5.2746 38 1 1.3141 -12.6747 3.6152 39 1 -0.2448 -13.7100 0.7327 40 1 1.4495 -9.4074 0.8403 41 1 2.5399 -3.9391 -1.0165 42 1 3.0994 -3.4809 0.6215 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594611679.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:56 Heat of formation + Delta-G solvation = -100.423490 kcal Electronic energy + Delta-G solvation = -25597.559031 eV Core-core repulsion = 21735.025616 eV Total energy + Delta-G solvation = -3862.533415 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.95065 -40.21264 -38.75051 -37.21419 -36.29509 -34.81766 -33.76987 -32.04165 -31.54465 -29.78207 -28.16903 -26.91855 -25.09794 -24.01487 -23.02575 -21.54603 -21.05236 -19.75385 -19.25443 -18.53382 -18.27432 -17.75601 -16.70809 -16.35053 -15.93583 -15.84182 -15.62123 -14.99643 -14.83296 -14.63875 -14.27254 -14.04165 -13.80613 -13.56442 -13.04862 -12.65873 -12.38098 -12.22190 -11.88500 -11.81481 -11.78643 -11.23505 -11.06660 -10.93060 -10.84540 -10.62157 -10.55873 -10.31957 -10.01815 -9.89064 -9.57804 -9.31903 -9.25201 -8.86502 -8.76824 -8.38984 -8.31186 -6.02650 -4.06111 0.41878 1.07517 2.29228 2.50897 2.80101 3.15836 3.29943 3.35576 3.37069 3.58421 4.19735 4.42195 4.54365 4.63435 4.86160 4.91539 5.13085 5.28404 5.29102 5.47419 5.58801 5.64581 5.79229 5.94879 5.99968 6.06293 6.17865 6.23258 6.27929 6.31409 6.51598 6.63554 6.69746 6.70783 6.84268 6.88029 6.92263 7.24114 7.31518 7.66645 7.67588 7.84411 7.97031 8.00445 8.40531 8.57542 8.96171 9.58003 11.06940 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029187 B = 0.002300 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.099120 B =12169.062776 C =12690.786704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.053 3.947 10 H 0.036 0.964 11 C -0.103 4.103 12 C -0.135 4.135 13 C 0.154 3.846 14 H 0.083 0.917 15 N -0.725 5.725 16 C 0.698 3.302 17 O -0.572 6.572 18 N -0.691 5.691 19 C 0.162 3.838 20 C -0.114 4.114 21 C -0.114 4.114 22 C -0.084 4.084 23 C -0.111 4.111 24 C 0.525 3.475 25 O -0.504 6.504 26 O -0.514 6.514 27 C -0.057 4.057 28 C -0.121 4.121 29 H 0.261 0.739 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.395 0.605 35 H 0.408 0.592 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.414 0.586 40 H 0.159 0.841 41 H 0.054 0.946 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.327 -23.331 9.574 26.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.554 4.554 8 H 0.073 0.927 9 C 0.034 3.966 10 H 0.054 0.946 11 C -0.141 4.141 12 C -0.174 4.174 13 C 0.050 3.950 14 H 0.101 0.899 15 N -0.378 5.378 16 C 0.398 3.602 17 O -0.448 6.448 18 N -0.340 5.340 19 C 0.067 3.933 20 C -0.135 4.135 21 C -0.133 4.133 22 C -0.103 4.103 23 C -0.113 4.113 24 C 0.369 3.631 25 O -0.392 6.392 26 O -0.327 6.327 27 C -0.078 4.078 28 C -0.159 4.159 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.229 0.771 35 H 0.244 0.756 36 H 0.150 0.850 37 H 0.153 0.847 38 H 0.155 0.845 39 H 0.272 0.728 40 H 0.176 0.824 41 H 0.073 0.927 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.358 -23.161 9.051 25.437 hybrid contribution 0.885 1.028 0.049 1.358 sum 6.243 -22.133 9.101 24.731 Atomic orbital electron populations 1.69949 1.05889 1.26635 1.50132 1.24985 0.94832 0.99029 0.95053 0.86699 0.79616 0.83350 0.78536 1.20309 1.21353 1.20357 1.21041 0.92672 0.90415 1.51231 0.92715 1.19543 0.92348 0.90870 0.93870 0.94580 1.22348 1.01504 0.90415 0.99857 1.22656 0.97573 0.98776 0.98353 1.21846 0.90806 0.90735 0.91580 0.89883 1.45578 1.29931 1.08637 1.53644 1.16063 0.82892 0.81677 0.79557 1.90950 1.27565 1.72819 1.53491 1.42668 1.25364 1.11578 1.54342 1.17306 0.99260 0.83868 0.92892 1.21197 1.01515 0.96627 0.94191 1.20904 0.99021 0.93591 0.99772 1.21392 0.96623 1.00349 0.91983 1.18871 1.04215 0.93999 0.94243 1.20877 0.76188 0.79828 0.86198 1.90939 1.52111 1.72124 1.24039 1.84537 1.71660 1.26656 1.49801 1.21514 0.94999 0.90586 1.00702 1.22771 0.99099 0.95130 0.98929 0.92955 0.93487 0.91551 0.92425 0.93215 0.77060 0.75617 0.84955 0.84733 0.84482 0.72764 0.82364 0.92687 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.20 12.41 55.43 0.69 -24.51 16 2 C 0.06 1.71 5.36 -17.82 -0.10 1.62 16 3 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -13.63 8.49 -34.44 -0.29 -13.92 16 8 H 0.05 1.41 7.77 -52.48 -0.41 1.00 16 9 C 0.05 1.25 2.73 -89.79 -0.24 1.01 16 10 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 11 C -0.10 -2.32 5.76 -25.07 -0.14 -2.47 16 12 C -0.13 -2.60 6.59 -25.61 -0.17 -2.77 16 13 C 0.15 2.74 3.25 -66.81 -0.22 2.52 16 14 H 0.08 1.59 7.56 -51.93 -0.39 1.19 16 15 N -0.72 -10.38 4.99 -57.58 -0.29 -10.67 16 16 C 0.70 10.48 8.40 -86.91 -0.73 9.75 16 17 O -0.57 -10.96 13.43 5.29 0.07 -10.89 16 18 N -0.69 -7.52 5.34 -14.25 -0.08 -7.60 16 19 C 0.16 1.83 6.29 -83.73 -0.53 1.30 16 20 C -0.11 -0.93 9.96 -39.31 -0.39 -1.32 16 21 C -0.11 -0.83 10.02 -39.67 -0.40 -1.23 16 22 C -0.08 -0.72 9.61 -39.15 -0.38 -1.10 16 23 C -0.11 -1.29 5.87 -105.00 -0.62 -1.91 16 24 C 0.53 6.27 8.27 34.62 0.29 6.56 16 25 O -0.50 -7.88 17.13 -19.24 -0.33 -8.21 16 26 O -0.51 -4.06 12.68 -40.52 -0.51 -4.58 16 27 C -0.06 -0.77 8.24 -38.97 -0.32 -1.09 16 28 C -0.12 -2.32 5.94 -25.09 -0.15 -2.47 16 29 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.05 1.07 8.04 -51.93 -0.42 0.66 16 31 H 0.07 1.65 7.63 -51.93 -0.40 1.25 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.05 0.91 7.92 -51.93 -0.41 0.50 16 34 H 0.40 4.51 8.38 -40.82 -0.34 4.17 16 35 H 0.41 2.91 8.84 -40.82 -0.36 2.55 16 36 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 38 H 0.14 0.90 7.60 -52.49 -0.40 0.50 16 39 H 0.41 1.47 9.11 45.56 0.42 1.88 16 40 H 0.16 2.64 5.81 -52.48 -0.30 2.33 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.06 1.10 7.63 -51.93 -0.40 0.70 16 LS Contribution 356.78 15.07 5.38 5.38 Total: -1.00 -34.19 356.78 -9.14 -43.33 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -4.66 Total: 7.43 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -4.39 Total: -5.52 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 0.32 Total: -42.78 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.77 Total: -23.67 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.19 -9.14 -43.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594611679.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.092 kcal (2) G-P(sol) polarization free energy of solvation -34.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds