Wall clock time and date at job start Tue Mar 31 2020 12:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00224 * 2 1 4 4 H 1.48504 * 109.46889 * 239.99276 * 3 2 1 5 5 H 1.48493 * 109.47168 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47257 * 119.99309 * 3 2 1 7 7 C 1.37882 * 119.99676 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99696 * 180.02562 * 7 2 1 9 9 C 1.50692 * 119.99990 * 0.02562 * 7 2 1 10 10 H 1.08994 * 110.82001 * 56.66312 * 9 7 2 11 11 C 1.54894 * 110.75624 * 293.32401 * 9 7 2 12 12 C 1.54262 * 104.19621 * 203.74321 * 11 9 7 13 13 C 1.53881 * 106.59949 * 23.61124 * 12 11 9 14 14 H 1.08997 * 110.07335 * 240.69281 * 13 12 11 15 15 N 1.46498 * 110.02909 * 119.28289 * 13 12 11 16 16 C 1.34778 * 119.99869 * 87.83834 * 15 13 12 17 17 O 1.21588 * 120.00142 * 359.97438 * 16 15 13 18 18 N 1.34786 * 120.00004 * 179.97438 * 16 15 13 19 19 C 1.39966 * 119.99931 * 175.38604 * 18 16 15 20 20 C 1.38997 * 119.99715 * 214.82636 * 19 18 16 21 21 C 1.38223 * 120.23632 * 179.76623 * 20 19 18 22 22 C 1.38006 * 120.22613 * 0.51187 * 21 20 19 23 23 C 1.39629 * 119.99036 * 359.74971 * 22 21 20 24 24 C 1.47744 * 120.11754 * 180.02562 * 23 22 21 25 25 O 1.21467 * 120.00183 * 179.97438 * 24 23 22 26 26 O 1.34712 * 119.99565 * 359.97200 * 24 23 22 27 27 C 1.38581 * 120.00092 * 35.10618 * 19 18 16 28 28 C 1.54266 * 106.59572 * 359.97438 * 13 12 11 29 29 H 0.97006 * 119.99840 * 0.02562 * 1 2 3 30 30 H 1.08997 * 110.48978 * 322.42560 * 11 9 7 31 31 H 1.08997 * 110.48475 * 85.06748 * 11 9 7 32 32 H 1.09004 * 110.03428 * 264.32932 * 12 11 9 33 33 H 1.09001 * 110.03680 * 142.89730 * 12 11 9 34 34 H 0.96998 * 120.00441 * 267.83142 * 15 13 12 35 35 H 0.97001 * 119.99685 * 355.38704 * 18 16 15 36 36 H 1.07998 * 119.87860 * 0.02562 * 20 19 18 37 37 H 1.07997 * 119.88804 * 180.24178 * 21 20 19 38 38 H 1.08001 * 120.00646 * 179.72537 * 22 21 20 39 39 H 0.96709 * 116.99662 * 180.02562 * 26 24 23 40 40 H 1.08003 * 120.10992 * 359.97438 * 27 19 18 41 41 H 1.08998 * 110.48382 * 217.70920 * 28 13 12 42 42 H 1.09004 * 110.59561 * 95.12625 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 1 0.5727 -2.5548 -0.8509 11 6 0.4793 -2.6874 1.3303 12 6 0.2960 -4.2146 1.4484 13 6 1.4096 -4.8576 0.6032 14 1 0.9739 -5.4600 -0.1938 15 7 2.2652 -5.6913 1.4513 16 6 1.9459 -6.9826 1.6682 17 8 0.9475 -7.4555 1.1603 18 7 2.7333 -7.7497 2.4480 19 6 2.3519 -9.0617 2.7520 20 6 2.6522 -9.6019 3.9970 21 6 2.2737 -10.8953 4.3042 22 6 1.6043 -11.6630 3.3730 23 6 1.3026 -11.1317 2.1175 24 6 0.5855 -11.9509 1.1187 25 8 0.3236 -11.4864 0.0273 26 8 0.2221 -13.2129 1.4185 27 6 1.6801 -9.8240 1.8097 28 6 2.2304 -3.6987 0.0006 29 1 -0.4850 0.8401 -0.0004 30 1 1.0642 -2.3075 2.1679 31 1 -0.4891 -2.1895 1.2832 32 1 -0.6809 -4.5044 1.0614 33 1 0.3921 -4.5229 2.4894 34 1 3.0615 -5.3140 1.8567 35 1 3.5642 -7.3925 2.7986 36 1 3.1795 -9.0074 4.7284 37 1 2.5065 -11.3081 5.2746 38 1 1.3141 -12.6747 3.6152 39 1 -0.2448 -13.7100 0.7327 40 1 1.4495 -9.4074 0.8403 41 1 2.5399 -3.9391 -1.0165 42 1 3.0994 -3.4809 0.6215 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594611679.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:55 Heat of formation + Delta-G solvation = -124.497808 kcal Electronic energy + Delta-G solvation = -25598.602972 eV Core-core repulsion = 21735.025616 eV Total energy + Delta-G solvation = -3863.577356 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.91791 -41.20866 -39.76363 -38.66397 -37.13932 -35.84269 -35.35527 -33.82410 -32.29175 -30.74772 -29.92909 -28.50912 -25.95793 -25.79672 -24.00815 -22.35756 -22.14493 -21.31750 -20.91390 -19.53420 -19.30685 -18.68278 -18.44454 -17.34620 -16.89185 -16.80320 -16.71549 -16.53574 -16.22757 -15.90358 -15.73182 -15.15949 -14.70852 -14.44739 -14.38511 -14.04929 -13.84747 -13.65339 -13.01652 -12.86867 -12.77063 -12.72299 -12.66897 -12.59722 -12.43958 -12.09733 -11.80544 -11.69317 -11.50376 -11.40609 -11.16701 -11.06329 -10.83284 -10.44759 -10.11224 -10.05765 -9.18259 -8.09375 -6.19461 -0.35621 0.30668 1.43834 1.44966 1.45772 1.52226 1.53656 1.97687 2.07712 2.45892 2.80113 3.17303 3.22018 3.87932 3.90504 4.01043 4.03045 4.12677 4.18952 4.22530 4.41924 4.55513 4.68414 4.75292 4.89453 4.91202 5.01569 5.06596 5.16254 5.19965 5.25305 5.30166 5.33020 5.39617 5.43767 5.53850 5.64967 5.66563 5.90314 5.91716 5.96331 5.99597 6.38053 6.91435 6.91853 6.98290 7.45884 7.48430 8.99711 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029187 B = 0.002300 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.099120 B =12169.062776 C =12690.786704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.009 3.991 3 Si 0.955 3.045 4 H -0.271 1.271 5 H -0.290 1.290 6 H -0.267 1.267 7 C -0.527 4.527 8 H 0.062 0.938 9 C 0.040 3.960 10 H -0.001 1.001 11 C -0.092 4.092 12 C -0.123 4.123 13 C 0.169 3.831 14 H 0.067 0.933 15 N -0.714 5.714 16 C 0.696 3.304 17 O -0.617 6.617 18 N -0.671 5.671 19 C 0.140 3.860 20 C -0.096 4.096 21 C -0.103 4.103 22 C -0.072 4.072 23 C -0.135 4.135 24 C 0.528 3.472 25 O -0.556 6.556 26 O -0.497 6.497 27 C -0.089 4.089 28 C -0.106 4.106 29 H 0.259 0.741 30 H 0.044 0.956 31 H 0.033 0.967 32 H 0.046 0.954 33 H 0.064 0.936 34 H 0.413 0.587 35 H 0.428 0.572 36 H 0.169 0.831 37 H 0.179 0.821 38 H 0.162 0.838 39 H 0.433 0.567 40 H 0.114 0.886 41 H 0.060 0.940 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.873 -24.867 12.739 29.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.190 4.190 3 Si 0.780 3.220 4 H -0.197 1.197 5 H -0.216 1.216 6 H -0.192 1.192 7 C -0.565 4.565 8 H 0.080 0.920 9 C 0.021 3.979 10 H 0.017 0.983 11 C -0.130 4.130 12 C -0.162 4.162 13 C 0.063 3.937 14 H 0.085 0.915 15 N -0.368 5.368 16 C 0.397 3.603 17 O -0.497 6.497 18 N -0.321 5.321 19 C 0.045 3.955 20 C -0.116 4.116 21 C -0.121 4.121 22 C -0.090 4.090 23 C -0.136 4.136 24 C 0.374 3.626 25 O -0.449 6.449 26 O -0.311 6.311 27 C -0.110 4.110 28 C -0.144 4.144 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.251 0.749 35 H 0.268 0.732 36 H 0.186 0.814 37 H 0.196 0.804 38 H 0.180 0.820 39 H 0.295 0.705 40 H 0.132 0.868 41 H 0.078 0.922 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.971 -24.747 12.266 28.747 hybrid contribution 0.076 1.358 -0.881 1.621 sum 8.047 -23.389 11.385 27.229 Atomic orbital electron populations 1.70102 1.07449 1.27225 1.51435 1.25810 0.95588 1.02610 0.94950 0.85665 0.78313 0.79022 0.78966 1.19662 1.21609 1.19196 1.21456 0.93184 0.91495 1.50377 0.92025 1.19522 0.92976 0.92317 0.93052 0.98260 1.22119 0.99435 0.92417 0.99036 1.22518 0.97827 0.96363 0.99503 1.21372 0.90526 0.90402 0.91357 0.91487 1.45182 1.30064 1.08307 1.53286 1.16190 0.82745 0.81759 0.79638 1.90947 1.29861 1.73660 1.55245 1.42348 1.25429 1.11182 1.53169 1.17530 1.00345 0.83627 0.93996 1.21606 0.99894 0.97170 0.92952 1.21441 0.96955 0.92790 1.00902 1.21732 0.95342 1.01457 0.90498 1.18983 1.05378 0.93572 0.95703 1.21117 0.75342 0.80580 0.85539 1.90915 1.54415 1.73375 1.26157 1.84485 1.71279 1.24988 1.50341 1.21292 0.97593 0.92184 0.99895 1.22560 0.98537 0.93359 0.99921 0.93217 0.93711 0.94800 0.93467 0.91710 0.74945 0.73221 0.81361 0.80417 0.82049 0.70541 0.86799 0.92159 0.90214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.93 12.41 21.45 0.27 -53.67 16 2 C 0.01 0.49 5.36 84.66 0.45 0.95 16 3 Si 0.95 42.83 29.54 68.60 2.03 44.86 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.53 -28.02 8.49 25.60 0.22 -27.80 16 8 H 0.06 3.12 7.77 -2.91 -0.02 3.10 16 9 C 0.04 1.97 2.73 -10.26 -0.03 1.94 16 10 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 11 C -0.09 -4.25 5.76 31.67 0.18 -4.06 16 12 C -0.12 -4.81 6.59 31.32 0.21 -4.61 16 13 C 0.17 6.02 3.25 45.72 0.15 6.17 16 14 H 0.07 2.65 7.56 -2.39 -0.02 2.63 16 15 N -0.71 -19.63 4.99 -454.33 -2.27 -21.90 16 16 C 0.70 20.71 8.40 179.05 1.50 22.22 16 17 O -0.62 -24.68 13.43 -3.99 -0.05 -24.73 16 18 N -0.67 -13.55 5.34 -317.26 -1.70 -15.25 16 19 C 0.14 2.95 6.29 38.11 0.24 3.19 16 20 C -0.10 -1.16 9.96 22.45 0.22 -0.93 16 21 C -0.10 -0.98 10.02 22.21 0.22 -0.76 16 22 C -0.07 -1.00 9.61 22.55 0.22 -0.78 16 23 C -0.13 -3.09 5.87 -20.11 -0.12 -3.20 16 24 C 0.53 12.94 8.27 70.34 0.58 13.53 16 25 O -0.56 -18.77 17.13 19.94 0.34 -18.43 16 26 O -0.50 -7.28 12.68 -56.22 -0.71 -7.99 16 27 C -0.09 -2.47 8.24 22.67 0.19 -2.28 16 28 C -0.11 -4.01 5.94 31.66 0.19 -3.82 16 29 H 0.26 14.51 8.31 -92.70 -0.77 13.74 16 30 H 0.04 2.06 8.04 -2.39 -0.02 2.04 16 31 H 0.03 1.75 7.63 -2.39 -0.02 1.74 16 32 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 33 H 0.06 2.33 7.92 -2.39 -0.02 2.31 16 34 H 0.41 8.39 8.38 -92.71 -0.78 7.61 16 35 H 0.43 4.84 8.84 -92.71 -0.82 4.02 16 36 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 37 H 0.18 0.27 8.06 -2.91 -0.02 0.25 16 38 H 0.16 1.44 7.60 -2.91 -0.02 1.41 16 39 H 0.43 2.62 9.11 -74.05 -0.67 1.95 16 40 H 0.11 4.20 5.81 -2.91 -0.02 4.18 16 41 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.08 2.72 7.63 -2.38 -0.02 2.71 16 Total: -1.00 -80.14 356.78 1.15 -78.99 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -1.18 Total: 18.37 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: 4.43 Total: -0.26 kcal Atomic # 7 Polarization: -87.12 SS G_CDS: -3.69 Total: -90.81 kcal Atomic # 8 Polarization: -50.73 SS G_CDS: -0.42 Total: -51.15 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -80.14 1.15 -78.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594611679.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.511 kcal (2) G-P(sol) polarization free energy of solvation -80.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds