Wall clock time and date at job start Tue Mar 31 2020 13:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38267 * 119.88475 * 2 1 4 4 C 1.37965 * 120.23080 * 180.25879 * 3 2 1 5 5 C 1.50694 * 120.00759 * 179.71737 * 4 3 2 6 6 C 1.39674 * 119.98445 * 359.44823 * 4 3 2 7 7 C 1.47742 * 120.11055 * 180.30135 * 6 4 3 8 8 O 1.21460 * 120.00475 * 4.34546 * 7 6 4 9 9 O 1.34714 * 119.99737 * 184.34980 * 7 6 4 10 10 C 1.39504 * 119.76875 * 0.27082 * 6 4 3 11 11 C 1.38621 * 119.77608 * 0.02562 * 10 6 4 12 12 N 1.39975 * 120.00081 * 179.97438 * 11 10 6 13 13 C 1.34776 * 119.99837 * 335.53825 * 12 11 10 14 14 O 1.21590 * 119.99803 * 354.37088 * 13 12 11 15 15 N 1.34773 * 120.00187 * 174.37684 * 13 12 11 16 16 C 1.47067 * 136.05873 * 359.61834 * 15 13 12 17 17 C 1.53756 * 87.88926 * 152.97038 * 16 15 13 18 18 C 1.50692 * 114.26607 * 139.79816 * 17 16 15 19 19 H 1.08001 * 119.99867 * 266.47496 * 18 17 16 20 20 C 1.37877 * 120.00278 * 86.47441 * 18 17 16 21 21 N 1.31515 * 119.99995 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00162 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47023 * 89.99739 * 22 20 18 24 24 H 1.48493 * 109.47387 * 210.00298 * 22 20 18 25 25 H 1.48501 * 109.46993 * 330.00105 * 22 20 18 26 26 C 1.47065 * 136.05864 * 180.02562 * 15 13 12 27 27 H 1.08998 * 109.47089 * 270.29918 * 1 2 3 28 28 H 1.08999 * 109.47151 * 30.29753 * 1 2 3 29 29 H 1.08994 * 109.47241 * 150.29544 * 1 2 3 30 30 H 1.08000 * 119.88437 * 359.97438 * 3 2 1 31 31 H 1.08999 * 109.47430 * 262.24965 * 5 4 3 32 32 H 1.09003 * 109.46975 * 22.25677 * 5 4 3 33 33 H 1.09006 * 109.47234 * 142.25041 * 5 4 3 34 34 H 0.96693 * 117.00101 * 180.02562 * 9 7 6 35 35 H 1.08001 * 120.11724 * 179.97438 * 10 6 4 36 36 H 0.97000 * 120.00316 * 155.52981 * 12 11 10 37 37 H 1.08996 * 113.47266 * 267.70380 * 16 15 13 38 38 H 1.09001 * 113.46232 * 38.14131 * 16 15 13 39 39 H 1.09007 * 114.39270 * 272.68124 * 17 16 15 40 40 H 0.96998 * 120.00105 * 179.97438 * 21 20 18 41 41 H 1.08999 * 113.46751 * 321.86385 * 26 15 13 42 42 H 1.09002 * 113.47408 * 92.24149 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1988 0.0000 4 6 3.5755 1.2072 -0.0054 5 6 4.3212 2.5166 -0.0118 6 6 4.2809 0.0016 0.0008 7 6 5.7583 0.0073 0.0018 8 8 6.3616 1.0589 0.0769 9 8 6.4364 -1.1538 -0.0808 10 6 3.5855 -1.2077 0.0067 11 6 2.1993 -1.2048 0.0058 12 7 1.4968 -2.4154 0.0112 13 6 2.0779 -3.5338 -0.4665 14 8 3.1711 -3.4726 -0.9951 15 7 1.4471 -4.7199 -0.3583 16 6 0.1706 -5.1936 0.1976 17 6 0.2206 -6.3458 -0.8193 18 6 -0.2290 -7.6755 -0.2711 19 1 0.4965 -8.3664 0.1324 20 6 -1.5664 -8.0103 -0.2847 21 7 -2.4498 -7.1693 -0.7766 22 14 -2.1235 -9.6590 0.3941 23 1 -2.4278 -9.5212 1.8411 24 1 -3.3420 -10.1053 -0.3277 25 1 -1.0434 -10.6611 0.2088 26 6 1.7355 -6.1111 -0.7378 27 1 -0.3633 0.0054 1.0276 28 1 -0.3633 0.8873 -0.5184 29 1 -0.3633 -0.8926 -0.5092 30 1 1.6521 2.1319 -0.0004 31 1 4.6175 2.7611 -1.0319 32 1 3.6761 3.3041 0.3779 33 1 5.2096 2.4319 0.6142 34 1 7.4018 -1.0996 -0.0762 35 1 4.1252 -2.1432 0.0110 36 1 0.5919 -2.4496 0.3587 37 1 0.2446 -5.5253 1.2333 38 1 -0.6570 -4.5035 0.0336 39 1 -0.2170 -6.1094 -1.7893 40 1 -3.3907 -7.4049 -0.7865 41 1 2.2414 -6.2029 -1.6989 42 1 2.2226 -6.6843 0.0510 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600155829.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:13 Heat of formation + Delta-G solvation = -52.710649 kcal Electronic energy + Delta-G solvation = -26113.845993 eV Core-core repulsion = 22253.381562 eV Total energy + Delta-G solvation = -3860.464431 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -40.93934 -40.10463 -38.95056 -37.46149 -36.24817 -34.88584 -32.86778 -32.78856 -31.59860 -29.18364 -27.87382 -26.63532 -25.09295 -24.99505 -23.36851 -22.53276 -21.02523 -20.15261 -19.23409 -18.36324 -17.73716 -17.24363 -16.69862 -15.85983 -15.75693 -15.48485 -15.22489 -14.98651 -14.66884 -14.40604 -14.10063 -13.79577 -13.44531 -13.34101 -13.18297 -12.81324 -12.67707 -12.32357 -12.17438 -11.97487 -11.82150 -11.63214 -11.59241 -11.52624 -11.38904 -11.04866 -10.84722 -10.42887 -10.30149 -10.17107 -9.80487 -9.32242 -9.19448 -8.91958 -8.66384 -8.17757 -7.72481 -6.25861 -4.31658 0.59927 1.29813 2.42307 2.76056 2.99176 3.19015 3.27327 3.30186 3.38115 3.79905 4.16318 4.29510 4.56399 4.72456 4.82776 5.02650 5.05855 5.17757 5.22120 5.42068 5.45103 5.65791 5.67260 5.81616 5.83094 5.89480 5.93362 6.04560 6.07916 6.12672 6.29511 6.34533 6.35586 6.39015 6.44395 6.52503 6.60134 6.63063 6.97377 7.43506 7.48635 7.72095 7.84817 8.09408 8.47718 8.72826 8.85423 9.35786 10.83840 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024064 B = 0.002761 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.294517 B =10138.442668 C =11118.549767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.083 4.083 3 C -0.114 4.114 4 C -0.044 4.044 5 C -0.125 4.125 6 C -0.123 4.123 7 C 0.532 3.468 8 O -0.517 6.517 9 O -0.505 6.505 10 C -0.068 4.068 11 C 0.161 3.839 12 N -0.682 5.682 13 C 0.723 3.277 14 O -0.587 6.587 15 N -0.659 5.659 16 C 0.096 3.904 17 C 0.037 3.963 18 C -0.518 4.518 19 H 0.065 0.935 20 C 0.069 3.931 21 N -0.886 5.886 22 Si 0.896 3.104 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.272 1.272 26 C 0.122 3.878 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.134 0.866 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.411 0.589 35 H 0.166 0.834 36 H 0.409 0.591 37 H 0.075 0.925 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.264 0.736 41 H 0.059 0.941 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.311 15.452 3.408 17.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.086 4.086 3 C -0.132 4.132 4 C -0.045 4.045 5 C -0.181 4.181 6 C -0.125 4.125 7 C 0.378 3.622 8 O -0.408 6.408 9 O -0.316 6.316 10 C -0.089 4.089 11 C 0.065 3.935 12 N -0.328 5.328 13 C 0.427 3.573 14 O -0.466 6.466 15 N -0.395 5.395 16 C -0.027 4.027 17 C 0.018 3.982 18 C -0.556 4.556 19 H 0.083 0.917 20 C -0.135 4.135 21 N -0.522 5.522 22 Si 0.724 3.276 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.196 1.196 26 C -0.001 4.001 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.152 0.848 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.116 0.884 34 H 0.269 0.731 35 H 0.183 0.817 36 H 0.245 0.755 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.703 15.832 2.983 17.857 hybrid contribution -0.346 -0.818 0.577 1.059 sum 7.358 15.013 3.559 17.094 Atomic orbital electron populations 1.20823 0.90445 1.03630 1.02814 1.19872 0.96483 0.91534 1.00757 1.20600 0.92630 0.97142 1.02872 1.19880 0.93476 0.94279 0.96882 1.21148 1.01085 0.92375 1.03467 1.18699 0.88836 0.93973 1.10953 1.20897 0.88820 0.80791 0.71644 1.90781 1.70641 1.32192 1.47187 1.84671 1.26341 1.35395 1.85172 1.21834 0.92788 0.99141 0.95098 1.17272 0.90957 0.84428 1.00884 1.42653 1.18738 1.06105 1.65339 1.15379 0.83114 0.79439 0.79369 1.90838 1.20346 1.84994 1.50455 1.49178 1.23760 1.05302 1.61277 1.23702 0.82190 0.96632 1.00131 1.20389 0.88494 0.93539 0.95802 1.20899 0.92642 1.00944 1.41105 0.91729 1.25029 0.96784 0.97135 0.94556 1.69944 1.02128 1.35785 1.44388 0.86520 0.78355 0.83730 0.79014 1.20501 1.21110 1.19639 1.23293 1.01189 0.76556 0.99030 0.90525 0.90652 0.91157 0.84841 0.91117 0.92220 0.88420 0.73099 0.81656 0.75517 0.90703 0.92499 0.91215 0.92583 0.92235 0.90798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 9.44 36.00 0.34 -0.77 16 2 C -0.08 -0.99 5.90 -104.35 -0.62 -1.60 16 3 C -0.11 -1.24 9.30 -39.67 -0.37 -1.61 16 4 C -0.04 -0.54 5.92 -104.19 -0.62 -1.15 16 5 C -0.12 -1.31 8.88 36.00 0.32 -0.99 16 6 C -0.12 -1.73 5.87 -105.01 -0.62 -2.35 16 7 C 0.53 7.20 8.24 34.61 0.29 7.48 16 8 O -0.52 -7.32 14.01 -19.23 -0.27 -7.59 16 9 O -0.50 -5.95 12.69 -40.53 -0.51 -6.46 16 10 C -0.07 -1.07 8.29 -38.97 -0.32 -1.39 16 11 C 0.16 2.38 6.41 -83.73 -0.54 1.84 16 12 N -0.68 -10.57 4.98 -14.26 -0.07 -10.64 16 13 C 0.72 13.82 8.60 -86.92 -0.75 13.08 16 14 O -0.59 -12.70 14.26 5.29 0.08 -12.62 16 15 N -0.66 -12.74 3.69 -190.87 -0.70 -13.44 16 16 C 0.10 1.87 7.88 -8.38 -0.07 1.81 16 17 C 0.04 0.83 3.79 -91.12 -0.35 0.48 16 18 C -0.52 -12.62 8.83 -34.44 -0.30 -12.92 16 19 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 20 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 21 N -0.89 -23.22 13.26 55.43 0.74 -22.49 16 22 Si 0.90 19.43 29.54 -169.99 -5.02 14.41 16 23 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 26 C 0.12 2.42 8.17 -8.51 -0.07 2.35 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 29 H 0.07 0.70 6.96 -51.93 -0.36 0.34 16 30 H 0.13 1.07 8.05 -52.49 -0.42 0.65 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.49 8.02 -51.93 -0.42 0.08 16 33 H 0.10 1.16 5.60 -51.93 -0.29 0.87 16 34 H 0.41 2.66 9.11 45.56 0.42 3.07 16 35 H 0.17 2.97 5.31 -52.49 -0.28 2.69 16 36 H 0.41 5.47 7.09 -40.82 -0.29 5.18 16 37 H 0.07 1.44 8.10 -51.93 -0.42 1.02 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.07 1.71 8.11 -51.92 -0.42 1.29 16 40 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.07 1.40 8.10 -51.93 -0.42 0.98 16 LS Contribution 355.94 15.07 5.36 5.36 Total: -1.00 -30.09 355.94 -8.73 -38.82 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -4.56 Total: 8.77 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: -3.76 Total: 5.87 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: -0.04 Total: -46.57 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -0.71 Total: -26.67 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.09 -8.73 -38.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600155829.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.892 kcal (2) G-P(sol) polarization free energy of solvation -30.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds