Wall clock time and date at job start Tue Mar 31 2020 13:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38267 * 119.88475 * 2 1 4 4 C 1.37965 * 120.23080 * 180.25879 * 3 2 1 5 5 C 1.50694 * 120.00759 * 179.71737 * 4 3 2 6 6 C 1.39674 * 119.98445 * 359.44823 * 4 3 2 7 7 C 1.47742 * 120.11055 * 180.30135 * 6 4 3 8 8 O 1.21460 * 120.00475 * 4.34546 * 7 6 4 9 9 O 1.34714 * 119.99737 * 184.34980 * 7 6 4 10 10 C 1.39504 * 119.76875 * 0.27082 * 6 4 3 11 11 C 1.38621 * 119.77608 * 0.02562 * 10 6 4 12 12 N 1.39975 * 120.00081 * 179.97438 * 11 10 6 13 13 C 1.34776 * 119.99837 * 335.53825 * 12 11 10 14 14 O 1.21590 * 119.99803 * 354.37088 * 13 12 11 15 15 N 1.34773 * 120.00187 * 174.37684 * 13 12 11 16 16 C 1.47067 * 136.05873 * 359.61834 * 15 13 12 17 17 C 1.53756 * 87.88926 * 152.97038 * 16 15 13 18 18 C 1.50692 * 114.26607 * 139.79816 * 17 16 15 19 19 H 1.08001 * 119.99867 * 266.47496 * 18 17 16 20 20 C 1.37877 * 120.00278 * 86.47441 * 18 17 16 21 21 N 1.31515 * 119.99995 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00162 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47023 * 89.99739 * 22 20 18 24 24 H 1.48493 * 109.47387 * 210.00298 * 22 20 18 25 25 H 1.48501 * 109.46993 * 330.00105 * 22 20 18 26 26 C 1.47065 * 136.05864 * 180.02562 * 15 13 12 27 27 H 1.08998 * 109.47089 * 270.29918 * 1 2 3 28 28 H 1.08999 * 109.47151 * 30.29753 * 1 2 3 29 29 H 1.08994 * 109.47241 * 150.29544 * 1 2 3 30 30 H 1.08000 * 119.88437 * 359.97438 * 3 2 1 31 31 H 1.08999 * 109.47430 * 262.24965 * 5 4 3 32 32 H 1.09003 * 109.46975 * 22.25677 * 5 4 3 33 33 H 1.09006 * 109.47234 * 142.25041 * 5 4 3 34 34 H 0.96693 * 117.00101 * 180.02562 * 9 7 6 35 35 H 1.08001 * 120.11724 * 179.97438 * 10 6 4 36 36 H 0.97000 * 120.00316 * 155.52981 * 12 11 10 37 37 H 1.08996 * 113.47266 * 267.70380 * 16 15 13 38 38 H 1.09001 * 113.46232 * 38.14131 * 16 15 13 39 39 H 1.09007 * 114.39270 * 272.68124 * 17 16 15 40 40 H 0.96998 * 120.00105 * 179.97438 * 21 20 18 41 41 H 1.08999 * 113.46751 * 321.86385 * 26 15 13 42 42 H 1.09002 * 113.47408 * 92.24149 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1988 0.0000 4 6 3.5755 1.2072 -0.0054 5 6 4.3212 2.5166 -0.0118 6 6 4.2809 0.0016 0.0008 7 6 5.7583 0.0073 0.0018 8 8 6.3616 1.0589 0.0769 9 8 6.4364 -1.1538 -0.0808 10 6 3.5855 -1.2077 0.0067 11 6 2.1993 -1.2048 0.0058 12 7 1.4968 -2.4154 0.0112 13 6 2.0779 -3.5338 -0.4665 14 8 3.1711 -3.4726 -0.9951 15 7 1.4471 -4.7199 -0.3583 16 6 0.1706 -5.1936 0.1976 17 6 0.2206 -6.3458 -0.8193 18 6 -0.2290 -7.6755 -0.2711 19 1 0.4965 -8.3664 0.1324 20 6 -1.5664 -8.0103 -0.2847 21 7 -2.4498 -7.1693 -0.7766 22 14 -2.1235 -9.6590 0.3941 23 1 -2.4278 -9.5212 1.8411 24 1 -3.3420 -10.1053 -0.3277 25 1 -1.0434 -10.6611 0.2088 26 6 1.7355 -6.1111 -0.7378 27 1 -0.3633 0.0054 1.0276 28 1 -0.3633 0.8873 -0.5184 29 1 -0.3633 -0.8926 -0.5092 30 1 1.6521 2.1319 -0.0004 31 1 4.6175 2.7611 -1.0319 32 1 3.6761 3.3041 0.3779 33 1 5.2096 2.4319 0.6142 34 1 7.4018 -1.0996 -0.0762 35 1 4.1252 -2.1432 0.0110 36 1 0.5919 -2.4496 0.3587 37 1 0.2446 -5.5253 1.2333 38 1 -0.6570 -4.5035 0.0336 39 1 -0.2170 -6.1094 -1.7893 40 1 -3.3907 -7.4049 -0.7865 41 1 2.2414 -6.2029 -1.6989 42 1 2.2226 -6.6843 0.0510 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600155829.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:12 Heat of formation + Delta-G solvation = -70.843881 kcal Electronic energy + Delta-G solvation = -26114.632309 eV Core-core repulsion = 22253.381562 eV Total energy + Delta-G solvation = -3861.250747 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.10373 -41.34444 -40.20177 -38.89034 -37.27265 -36.11039 -34.65854 -33.84486 -32.72432 -30.72554 -28.73992 -27.84001 -26.75222 -26.55190 -24.42903 -23.56084 -22.48633 -21.26975 -20.67494 -19.53024 -18.94467 -18.71526 -18.33260 -17.13679 -16.88367 -16.74566 -16.39863 -16.36471 -16.14523 -15.73502 -15.29314 -14.89484 -14.59747 -14.34525 -14.25904 -14.07319 -14.00404 -13.49943 -13.26147 -13.25380 -13.05875 -12.90084 -12.78264 -12.73746 -12.58623 -12.56413 -12.45814 -12.18185 -11.57851 -11.35954 -11.13990 -11.05447 -10.89194 -10.52750 -9.89172 -9.68331 -8.93005 -8.15972 -6.26415 -0.40849 0.25372 1.35164 1.43506 1.48352 1.52133 1.60367 1.99295 2.08148 2.46314 2.69873 2.80407 3.15225 3.66567 3.80524 3.89123 4.01600 4.21819 4.29478 4.36580 4.38811 4.47938 4.62219 4.68969 4.72006 4.77039 4.81455 4.84441 4.86455 4.91266 4.95299 5.01766 5.09324 5.24303 5.32634 5.38114 5.49852 5.61362 5.67671 5.82845 5.89769 6.14487 6.24084 6.82367 6.95210 6.96266 7.37807 7.44453 8.93872 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024064 B = 0.002761 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.294517 B =10138.442668 C =11118.549767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.071 4.071 3 C -0.105 4.105 4 C -0.042 4.042 5 C -0.121 4.121 6 C -0.142 4.142 7 C 0.532 3.468 8 O -0.527 6.527 9 O -0.512 6.512 10 C -0.087 4.087 11 C 0.133 3.867 12 N -0.669 5.669 13 C 0.720 3.280 14 O -0.616 6.616 15 N -0.660 5.660 16 C 0.113 3.887 17 C 0.026 3.974 18 C -0.527 4.527 19 H 0.067 0.933 20 C 0.023 3.977 21 N -0.917 5.917 22 Si 0.956 3.044 23 H -0.273 1.273 24 H -0.288 1.288 25 H -0.268 1.268 26 C 0.128 3.872 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.059 0.941 30 H 0.174 0.826 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.431 0.569 35 H 0.136 0.864 36 H 0.419 0.581 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.041 0.959 40 H 0.265 0.735 41 H 0.057 0.943 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.482 17.175 4.339 18.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.074 4.074 3 C -0.123 4.123 4 C -0.043 4.043 5 C -0.177 4.177 6 C -0.143 4.143 7 C 0.378 3.622 8 O -0.420 6.420 9 O -0.326 6.326 10 C -0.108 4.108 11 C 0.038 3.962 12 N -0.316 5.316 13 C 0.424 3.576 14 O -0.498 6.498 15 N -0.397 5.397 16 C -0.010 4.010 17 C 0.006 3.994 18 C -0.565 4.565 19 H 0.085 0.915 20 C -0.177 4.177 21 N -0.555 5.555 22 Si 0.782 3.218 23 H -0.199 1.199 24 H -0.214 1.214 25 H -0.193 1.193 26 C 0.005 3.995 27 H 0.114 0.886 28 H 0.118 0.882 29 H 0.078 0.922 30 H 0.191 0.809 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.292 0.708 35 H 0.154 0.846 36 H 0.257 0.743 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.892 17.577 3.932 19.285 hybrid contribution -0.013 -1.267 0.258 1.293 sum 6.879 16.310 4.189 18.190 Atomic orbital electron populations 1.20927 0.88201 1.04323 1.04243 1.20211 0.98025 0.90591 0.98599 1.21046 0.92103 0.98240 1.00906 1.20243 0.94370 0.94244 0.95466 1.21137 1.00949 0.92193 1.03389 1.18890 0.89287 0.94291 1.11867 1.20902 0.88910 0.80900 0.71463 1.90774 1.70879 1.32432 1.47888 1.84645 1.28229 1.34907 1.84777 1.21597 0.93442 0.98644 0.97082 1.17514 0.90828 0.84946 1.02949 1.42426 1.18996 1.05489 1.64723 1.15505 0.82846 0.79960 0.79280 1.90828 1.21680 1.85487 1.51764 1.49068 1.23678 1.05361 1.61556 1.23437 0.82479 0.95521 0.99529 1.20255 0.90009 0.93955 0.95173 1.21194 0.92841 1.01794 1.40659 0.91506 1.25717 0.96970 1.00071 0.94973 1.70042 1.02295 1.37381 1.45770 0.85579 0.77658 0.80113 0.78447 1.19884 1.21403 1.19255 1.23170 0.99632 0.77288 0.99418 0.88604 0.88231 0.92181 0.80885 0.90980 0.89211 0.89877 0.70772 0.84617 0.74324 0.90031 0.91879 0.94089 0.92649 0.92444 0.89708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.81 9.44 71.24 0.67 -1.14 16 2 C -0.07 -1.52 5.90 -19.69 -0.12 -1.63 16 3 C -0.10 -1.92 9.30 22.21 0.21 -1.71 16 4 C -0.04 -0.94 5.92 -19.58 -0.12 -1.06 16 5 C -0.12 -2.24 8.88 71.23 0.63 -1.61 16 6 C -0.14 -3.98 5.87 -20.11 -0.12 -4.10 16 7 C 0.53 14.50 8.24 70.33 0.58 15.08 16 8 O -0.53 -14.79 14.01 19.96 0.28 -14.51 16 9 O -0.51 -12.39 12.69 -56.24 -0.71 -13.10 16 10 C -0.09 -2.78 8.29 22.67 0.19 -2.60 16 11 C 0.13 3.85 6.41 38.10 0.24 4.10 16 12 N -0.67 -20.58 4.98 -317.28 -1.58 -22.16 16 13 C 0.72 27.93 8.60 179.06 1.54 29.47 16 14 O -0.62 -27.50 14.26 -4.00 -0.06 -27.56 16 15 N -0.66 -25.69 3.69 -876.04 -3.23 -28.92 16 16 C 0.11 4.38 7.88 83.26 0.66 5.04 16 17 C 0.03 1.15 3.79 -11.11 -0.04 1.11 16 18 C -0.53 -25.69 8.83 25.60 0.23 -25.46 16 19 H 0.07 3.16 7.81 -2.91 -0.02 3.14 16 20 C 0.02 1.16 5.46 84.65 0.46 1.62 16 21 N -0.92 -48.35 13.26 21.45 0.28 -48.07 16 22 Si 0.96 39.60 29.54 68.60 2.03 41.63 16 23 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 24 H -0.29 -11.98 7.11 99.48 0.71 -11.27 16 25 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 26 C 0.13 5.12 8.17 83.18 0.68 5.80 16 27 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.10 1.06 8.09 -2.39 -0.02 1.04 16 29 H 0.06 1.06 6.96 -2.39 -0.02 1.04 16 30 H 0.17 1.81 8.05 -2.91 -0.02 1.78 16 31 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.09 1.12 8.02 -2.39 -0.02 1.10 16 33 H 0.08 1.85 5.60 -2.38 -0.01 1.83 16 34 H 0.43 5.65 9.11 -74.06 -0.67 4.97 16 35 H 0.14 5.17 5.31 -2.91 -0.02 5.15 16 36 H 0.42 10.84 7.09 -92.71 -0.66 10.19 16 37 H 0.08 3.08 8.10 -2.39 -0.02 3.06 16 38 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.04 2.08 8.11 -2.38 -0.02 2.06 16 40 H 0.26 13.32 8.31 -92.71 -0.77 12.55 16 41 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.08 3.21 8.10 -2.39 -0.02 3.19 16 Total: -1.00 -65.78 355.94 2.45 -63.32 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: -0.25 Total: 26.46 kcal Atomic # 6 Polarization: 17.22 SS G_CDS: 5.69 Total: 22.91 kcal Atomic # 7 Polarization: -94.62 SS G_CDS: -4.53 Total: -99.15 kcal Atomic # 8 Polarization: -54.68 SS G_CDS: -0.49 Total: -55.17 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.63 kcal Total: -65.78 2.45 -63.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600155829.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.521 kcal (2) G-P(sol) polarization free energy of solvation -65.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds