Wall clock time and date at job start Tue Mar 31 2020 13:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39795 * 126.51720 * 2 1 4 4 C 1.35486 * 107.84840 * 180.12761 * 3 2 1 5 5 C 1.50697 * 125.51276 * 179.88129 * 4 3 2 6 6 N 1.46895 * 109.46899 * 265.39656 * 5 4 3 7 7 C 1.46903 * 111.00348 * 287.97736 * 6 5 4 8 8 C 1.50699 * 109.47373 * 170.00213 * 7 6 5 9 9 H 1.08001 * 120.00139 * 359.97438 * 8 7 6 10 10 C 1.37882 * 120.00000 * 180.02562 * 8 7 6 11 11 N 1.31519 * 119.99761 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 119.99850 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47413 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47094 * 119.99893 * 12 10 8 15 15 H 1.48498 * 109.46975 * 239.99648 * 12 10 8 16 16 C 1.46902 * 111.00344 * 164.02452 * 6 5 4 17 17 C 1.50700 * 109.46949 * 288.25462 * 16 6 5 18 18 C 1.34514 * 125.79340 * 95.99029 * 17 16 6 19 19 C 1.41380 * 106.84175 * 180.02562 * 18 17 16 20 20 C 1.34514 * 106.84136 * 359.97438 * 19 18 17 21 21 O 1.34307 * 108.42193 * 0.02562 * 20 19 18 22 22 N 1.34967 * 108.97797 * 359.61440 * 4 3 2 23 23 H 0.97000 * 125.62999 * 180.28305 * 22 4 3 24 24 C 1.37695 * 108.73139 * 0.24079 * 22 4 3 25 25 C 1.46490 * 126.26404 * 180.02562 * 24 22 4 26 26 O 1.21619 * 120.00227 * 179.97438 * 25 24 22 27 27 O 1.34899 * 119.99708 * 359.97438 * 25 24 22 28 28 H 1.08995 * 109.47188 * 269.53314 * 1 2 3 29 29 H 1.09008 * 109.46988 * 29.53193 * 1 2 3 30 30 H 1.08999 * 109.46752 * 149.52481 * 1 2 3 31 31 H 1.08003 * 126.08069 * 0.02562 * 3 2 1 32 32 H 1.08998 * 109.47097 * 145.39435 * 5 4 3 33 33 H 1.08995 * 109.46865 * 25.39506 * 5 4 3 34 34 H 1.09005 * 109.46946 * 290.00475 * 7 6 5 35 35 H 1.09000 * 109.46944 * 49.99975 * 7 6 5 36 36 H 0.96998 * 119.99644 * 180.02562 * 11 10 8 37 37 H 1.08991 * 109.47597 * 168.24832 * 16 6 5 38 38 H 1.09005 * 109.46607 * 48.24798 * 16 6 5 39 39 H 1.07995 * 126.58037 * 0.04765 * 18 17 16 40 40 H 1.07999 * 126.58252 * 180.02562 * 19 18 17 41 41 H 1.08005 * 125.79115 * 180.27042 * 20 19 18 42 42 H 0.96696 * 116.99721 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3389 1.1235 0.0000 4 6 3.6225 0.6898 -0.0029 5 6 4.8444 1.5717 -0.0064 6 7 5.3031 1.7672 -1.3882 7 6 5.9114 0.5402 -1.9196 8 6 6.1446 0.6957 -3.4003 9 1 5.8682 1.6140 -3.8971 10 6 6.7099 -0.3348 -4.1211 11 7 7.0460 -1.4533 -3.5163 12 14 6.9984 -0.1423 -5.9566 13 1 6.5363 1.2000 -6.3923 14 1 8.4475 -0.2861 -6.2477 15 1 6.2402 -1.1882 -6.6892 16 6 6.2356 2.8987 -1.4783 17 6 5.4787 4.1891 -1.2966 18 6 5.3478 4.8687 -0.1432 19 6 4.5645 6.0109 -0.4274 20 6 4.2641 5.9613 -1.7376 21 8 4.8203 4.8556 -2.2590 22 7 3.6298 -0.6598 0.0039 23 1 4.4212 -1.2206 0.0075 24 6 2.3282 -1.1091 0.0058 25 6 1.8944 -2.5083 0.0133 26 8 0.7084 -2.7773 0.0147 27 8 2.8106 -3.4984 0.0185 28 1 -0.3633 -0.0084 1.0276 29 1 -0.3633 0.8942 -0.5066 30 1 -0.3633 -0.8857 -0.5212 31 1 2.0159 2.1541 0.0004 32 1 5.6355 1.0989 0.5756 33 1 4.5968 2.5374 0.4343 34 1 6.8626 0.3599 -1.4189 35 1 5.2427 -0.3024 -1.7436 36 1 7.4440 -2.1781 -4.0234 37 1 6.7182 2.8950 -2.4555 38 1 6.9925 2.8086 -0.6990 39 1 5.7619 4.5947 0.8158 40 1 4.2655 6.7768 0.2729 41 1 3.6786 6.6894 -2.2794 42 1 2.4764 -4.4057 0.0230 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600189910.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:56 Heat of formation + Delta-G solvation = -28.533361 kcal Electronic energy + Delta-G solvation = -26640.917103 eV Core-core repulsion = 22781.501078 eV Total energy + Delta-G solvation = -3859.416025 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.21445 -41.25443 -39.41628 -36.91509 -35.93616 -32.88706 -32.59202 -32.34839 -30.86057 -29.81261 -27.50354 -26.91981 -26.09027 -24.08787 -22.44759 -21.42360 -21.17140 -20.15985 -19.77138 -18.98150 -18.26463 -17.18212 -17.04709 -16.55116 -15.77636 -15.63165 -15.09848 -15.01427 -14.65708 -14.06172 -13.84832 -13.64398 -13.34937 -13.13263 -12.75751 -12.74690 -12.56633 -12.45287 -12.33929 -12.21878 -12.04492 -11.83654 -11.49254 -11.43678 -11.24855 -10.93639 -10.78228 -10.60444 -10.36169 -10.04275 -9.64297 -9.35785 -8.58032 -8.44615 -8.20546 -7.86449 -7.53181 -6.15418 -4.16553 1.45292 2.05829 2.82850 2.94644 3.12661 3.25375 3.33786 3.37121 3.37226 3.39264 3.54640 4.35096 4.82162 5.02122 5.15431 5.21244 5.24696 5.27381 5.35425 5.43922 5.52711 5.64594 5.71460 5.85757 5.93398 6.00650 6.04840 6.11193 6.19318 6.21434 6.28141 6.45526 6.52306 6.67565 6.76149 6.96388 7.00885 7.09328 7.25671 7.49275 7.63605 7.71241 7.81158 7.96233 8.06674 8.32163 8.90805 9.48792 10.95381 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.007725 B = 0.005626 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3623.557757 B = 4975.775387 C = 7737.805726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.061 4.061 3 C -0.201 4.201 4 C 0.106 3.894 5 C 0.106 3.894 6 N -0.525 5.525 7 C 0.190 3.810 8 C -0.510 4.510 9 H 0.067 0.933 10 C 0.058 3.942 11 N -0.897 5.897 12 Si 0.897 3.103 13 H -0.270 1.270 14 H -0.284 1.284 15 H -0.284 1.284 16 C 0.132 3.868 17 C 0.027 3.973 18 C -0.229 4.229 19 C -0.215 4.215 20 C -0.052 4.052 21 O -0.163 6.163 22 N -0.513 5.513 23 H 0.424 0.576 24 C -0.061 4.061 25 C 0.557 3.443 26 O -0.517 6.517 27 O -0.518 6.518 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.142 0.858 32 H 0.039 0.961 33 H 0.094 0.906 34 H -0.005 1.005 35 H 0.035 0.965 36 H 0.262 0.738 37 H 0.109 0.891 38 H 0.059 0.941 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.195 0.805 42 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.831 6.666 9.660 13.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.070 4.070 3 C -0.225 4.225 4 C -0.015 4.015 5 C -0.023 4.023 6 N -0.251 5.251 7 C 0.066 3.934 8 C -0.549 4.549 9 H 0.085 0.915 10 C -0.143 4.143 11 N -0.536 5.536 12 Si 0.725 3.275 13 H -0.195 1.195 14 H -0.210 1.210 15 H -0.210 1.210 16 C 0.004 3.996 17 C -0.025 4.025 18 C -0.249 4.249 19 C -0.235 4.235 20 C -0.121 4.121 21 O -0.057 6.057 22 N -0.108 5.108 23 H 0.263 0.737 24 C -0.171 4.171 25 C 0.404 3.596 26 O -0.407 6.407 27 O -0.330 6.330 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.160 0.840 32 H 0.057 0.943 33 H 0.112 0.888 34 H 0.012 0.988 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.127 0.873 38 H 0.077 0.923 39 H 0.159 0.841 40 H 0.159 0.841 41 H 0.212 0.788 42 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -6.220 6.657 9.021 12.821 hybrid contribution 1.034 -0.972 -0.369 1.467 sum -5.185 5.685 8.651 11.578 Atomic orbital electron populations 1.20332 0.89465 1.02851 1.01885 1.19871 0.95488 0.90484 1.01171 1.20439 0.90661 0.98466 1.12949 1.20335 0.96865 0.82342 1.01989 1.20774 0.91848 0.97637 0.92042 1.62042 1.40090 1.06936 1.15990 1.19865 0.92540 0.85336 0.95655 1.21153 1.39843 1.01346 0.92541 0.91507 1.24961 0.95484 0.95089 0.98814 1.69939 1.42624 1.04934 1.36148 0.86441 0.77695 0.78402 0.84968 1.19490 1.21025 1.20981 1.20498 0.91178 0.83585 1.04324 1.22735 0.97568 0.95777 0.86397 1.21522 1.06757 0.97862 0.98799 1.21700 1.04553 1.00945 0.96275 1.23938 1.02875 0.90770 0.94476 1.84106 1.52791 1.30698 1.38147 1.41886 1.07365 1.06829 1.54730 0.73666 1.18865 0.84569 0.89715 1.23981 1.19537 0.83338 0.84554 0.72218 1.90880 1.17715 1.83881 1.48265 1.84649 1.42391 1.19715 1.86269 0.91675 0.91735 0.90572 0.84003 0.94327 0.88783 0.98762 0.94739 0.92861 0.87308 0.92324 0.84063 0.84095 0.78775 0.72953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.23 9.81 36.01 0.35 -0.88 16 2 C -0.06 -1.01 6.22 -104.13 -0.65 -1.66 16 3 C -0.20 -3.29 10.66 -39.98 -0.43 -3.72 16 4 C 0.11 1.80 6.04 -82.20 -0.50 1.30 16 5 C 0.11 1.72 5.35 -4.98 -0.03 1.70 16 6 N -0.53 -10.32 4.39 -238.97 -1.05 -11.37 16 7 C 0.19 4.50 4.57 -4.97 -0.02 4.48 16 8 C -0.51 -13.58 8.29 -34.44 -0.29 -13.87 16 9 H 0.07 1.80 7.25 -52.49 -0.38 1.42 16 10 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 11 N -0.90 -25.35 13.29 55.43 0.74 -24.61 16 12 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 13 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 C 0.13 2.33 5.35 -4.98 -0.03 2.30 16 17 C 0.03 0.44 6.28 -35.63 -0.22 0.22 16 18 C -0.23 -3.18 9.58 -39.70 -0.38 -3.56 16 19 C -0.22 -2.70 10.91 -39.70 -0.43 -3.14 16 20 C -0.05 -0.68 12.09 29.42 0.36 -0.33 16 21 O -0.16 -2.76 10.65 5.69 0.06 -2.70 16 22 N -0.51 -8.75 5.26 -5.82 -0.03 -8.78 16 23 H 0.42 7.06 8.41 -40.82 -0.34 6.71 16 24 C -0.06 -1.05 7.10 -82.00 -0.58 -1.63 16 25 C 0.56 9.06 8.30 34.05 0.28 9.35 16 26 O -0.52 -9.02 15.62 -19.36 -0.30 -9.32 16 27 O -0.52 -7.05 13.44 -41.04 -0.55 -7.60 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.80 8.14 -51.92 -0.42 0.37 16 30 H 0.08 1.14 6.54 -51.93 -0.34 0.80 16 31 H 0.14 2.10 8.06 -52.48 -0.42 1.68 16 32 H 0.04 0.59 8.05 -51.93 -0.42 0.18 16 33 H 0.09 1.37 6.21 -51.93 -0.32 1.05 16 34 H -0.01 -0.13 8.12 -51.93 -0.42 -0.55 16 35 H 0.03 0.86 6.07 -51.93 -0.32 0.55 16 36 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 37 H 0.11 2.14 6.59 -51.93 -0.34 1.80 16 38 H 0.06 0.92 8.05 -51.93 -0.42 0.50 16 39 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 40 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 41 H 0.20 1.77 8.06 -52.48 -0.42 1.34 16 42 H 0.41 3.49 9.11 45.56 0.42 3.90 16 LS Contribution 360.74 15.07 5.44 5.44 Total: -1.00 -32.17 360.74 -7.93 -40.11 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -4.56 Total: 10.61 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -2.66 Total: -7.94 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: -0.34 Total: -44.77 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.79 Total: -19.62 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.17 -7.93 -40.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600189910.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.572 kcal (2) G-P(sol) polarization free energy of solvation -32.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds