Wall clock time and date at job start Tue Mar 31 2020 13:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39795 * 126.51720 * 2 1 4 4 C 1.35486 * 107.84840 * 180.12761 * 3 2 1 5 5 C 1.50697 * 125.51276 * 179.88129 * 4 3 2 6 6 N 1.46895 * 109.46899 * 265.39656 * 5 4 3 7 7 C 1.46903 * 111.00348 * 287.97736 * 6 5 4 8 8 C 1.50699 * 109.47373 * 170.00213 * 7 6 5 9 9 H 1.08001 * 120.00139 * 359.97438 * 8 7 6 10 10 C 1.37882 * 120.00000 * 180.02562 * 8 7 6 11 11 N 1.31519 * 119.99761 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 119.99850 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47413 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47094 * 119.99893 * 12 10 8 15 15 H 1.48498 * 109.46975 * 239.99648 * 12 10 8 16 16 C 1.46902 * 111.00344 * 164.02452 * 6 5 4 17 17 C 1.50700 * 109.46949 * 288.25462 * 16 6 5 18 18 C 1.34514 * 125.79340 * 95.99029 * 17 16 6 19 19 C 1.41380 * 106.84175 * 180.02562 * 18 17 16 20 20 C 1.34514 * 106.84136 * 359.97438 * 19 18 17 21 21 O 1.34307 * 108.42193 * 0.02562 * 20 19 18 22 22 N 1.34967 * 108.97797 * 359.61440 * 4 3 2 23 23 H 0.97000 * 125.62999 * 180.28305 * 22 4 3 24 24 C 1.37695 * 108.73139 * 0.24079 * 22 4 3 25 25 C 1.46490 * 126.26404 * 180.02562 * 24 22 4 26 26 O 1.21619 * 120.00227 * 179.97438 * 25 24 22 27 27 O 1.34899 * 119.99708 * 359.97438 * 25 24 22 28 28 H 1.08995 * 109.47188 * 269.53314 * 1 2 3 29 29 H 1.09008 * 109.46988 * 29.53193 * 1 2 3 30 30 H 1.08999 * 109.46752 * 149.52481 * 1 2 3 31 31 H 1.08003 * 126.08069 * 0.02562 * 3 2 1 32 32 H 1.08998 * 109.47097 * 145.39435 * 5 4 3 33 33 H 1.08995 * 109.46865 * 25.39506 * 5 4 3 34 34 H 1.09005 * 109.46946 * 290.00475 * 7 6 5 35 35 H 1.09000 * 109.46944 * 49.99975 * 7 6 5 36 36 H 0.96998 * 119.99644 * 180.02562 * 11 10 8 37 37 H 1.08991 * 109.47597 * 168.24832 * 16 6 5 38 38 H 1.09005 * 109.46607 * 48.24798 * 16 6 5 39 39 H 1.07995 * 126.58037 * 0.04765 * 18 17 16 40 40 H 1.07999 * 126.58252 * 180.02562 * 19 18 17 41 41 H 1.08005 * 125.79115 * 180.27042 * 20 19 18 42 42 H 0.96696 * 116.99721 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3389 1.1235 0.0000 4 6 3.6225 0.6898 -0.0029 5 6 4.8444 1.5717 -0.0064 6 7 5.3031 1.7672 -1.3882 7 6 5.9114 0.5402 -1.9196 8 6 6.1446 0.6957 -3.4003 9 1 5.8682 1.6140 -3.8971 10 6 6.7099 -0.3348 -4.1211 11 7 7.0460 -1.4533 -3.5163 12 14 6.9984 -0.1423 -5.9566 13 1 6.5363 1.2000 -6.3923 14 1 8.4475 -0.2861 -6.2477 15 1 6.2402 -1.1882 -6.6892 16 6 6.2356 2.8987 -1.4783 17 6 5.4787 4.1891 -1.2966 18 6 5.3478 4.8687 -0.1432 19 6 4.5645 6.0109 -0.4274 20 6 4.2641 5.9613 -1.7376 21 8 4.8203 4.8556 -2.2590 22 7 3.6298 -0.6598 0.0039 23 1 4.4212 -1.2206 0.0075 24 6 2.3282 -1.1091 0.0058 25 6 1.8944 -2.5083 0.0133 26 8 0.7084 -2.7773 0.0147 27 8 2.8106 -3.4984 0.0185 28 1 -0.3633 -0.0084 1.0276 29 1 -0.3633 0.8942 -0.5066 30 1 -0.3633 -0.8857 -0.5212 31 1 2.0159 2.1541 0.0004 32 1 5.6355 1.0989 0.5756 33 1 4.5968 2.5374 0.4343 34 1 6.8626 0.3599 -1.4189 35 1 5.2427 -0.3024 -1.7436 36 1 7.4440 -2.1781 -4.0234 37 1 6.7182 2.8950 -2.4555 38 1 6.9925 2.8086 -0.6990 39 1 5.7619 4.5947 0.8158 40 1 4.2655 6.7768 0.2729 41 1 3.6786 6.6894 -2.2794 42 1 2.4764 -4.4057 0.0230 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600189910.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:55 Heat of formation + Delta-G solvation = -50.042932 kcal Electronic energy + Delta-G solvation = -26641.849828 eV Core-core repulsion = 22781.501078 eV Total energy + Delta-G solvation = -3860.348750 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.32242 -42.52603 -40.65843 -38.42402 -37.14240 -34.81038 -33.79048 -33.56772 -32.11998 -31.21256 -29.13067 -28.16277 -27.39485 -25.72370 -23.84616 -22.66393 -22.48260 -21.37779 -21.04235 -20.24142 -19.51176 -18.59235 -18.42126 -18.09283 -17.12016 -16.89771 -16.60759 -16.39674 -16.17852 -15.54157 -15.14819 -15.02139 -14.57677 -14.40411 -14.08376 -14.03267 -13.94673 -13.67091 -13.54497 -13.50111 -13.29141 -13.21644 -13.06740 -12.67433 -12.64562 -12.62365 -12.55763 -12.17614 -11.93110 -11.61082 -11.31779 -10.68003 -10.64120 -9.71964 -9.37955 -9.14369 -9.04873 -8.23509 -6.30480 0.17052 0.94446 1.36600 1.39484 1.51129 1.60949 1.86032 1.94071 2.10852 2.31081 2.31681 2.38369 3.10660 3.40552 3.77413 3.99365 4.02612 4.16539 4.28052 4.29391 4.36108 4.43783 4.47853 4.58740 4.72356 4.77312 4.90230 4.97198 5.05686 5.09322 5.13098 5.17842 5.21582 5.36186 5.39301 5.50829 5.62400 5.78747 5.83265 5.98825 6.00903 6.19977 6.38091 6.41713 6.55669 6.83537 6.94328 7.38403 8.86754 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.007725 B = 0.005626 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3623.557757 B = 4975.775387 C = 7737.805726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.069 4.069 3 C -0.202 4.202 4 C 0.091 3.909 5 C 0.111 3.889 6 N -0.536 5.536 7 C 0.206 3.794 8 C -0.521 4.521 9 H 0.056 0.944 10 C 0.010 3.990 11 N -0.926 5.926 12 Si 0.956 3.044 13 H -0.268 1.268 14 H -0.276 1.276 15 H -0.283 1.283 16 C 0.137 3.863 17 C -0.009 4.009 18 C -0.213 4.213 19 C -0.217 4.217 20 C -0.052 4.052 21 O -0.196 6.196 22 N -0.517 5.517 23 H 0.422 0.578 24 C -0.083 4.083 25 C 0.559 3.441 26 O -0.533 6.533 27 O -0.517 6.517 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.159 0.841 32 H 0.047 0.953 33 H 0.116 0.884 34 H -0.024 1.024 35 H 0.019 0.981 36 H 0.264 0.736 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.162 0.838 40 H 0.173 0.827 41 H 0.230 0.770 42 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.641 8.450 10.339 14.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.078 4.078 3 C -0.227 4.227 4 C -0.030 4.030 5 C -0.017 4.017 6 N -0.261 5.261 7 C 0.081 3.919 8 C -0.559 4.559 9 H 0.074 0.926 10 C -0.189 4.189 11 N -0.567 5.567 12 Si 0.782 3.218 13 H -0.193 1.193 14 H -0.201 1.201 15 H -0.209 1.209 16 C 0.009 3.991 17 C -0.059 4.059 18 C -0.233 4.233 19 C -0.236 4.236 20 C -0.120 4.120 21 O -0.092 6.092 22 N -0.112 5.112 23 H 0.261 0.739 24 C -0.193 4.193 25 C 0.406 3.594 26 O -0.425 6.425 27 O -0.331 6.331 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.176 0.824 32 H 0.065 0.935 33 H 0.134 0.866 34 H -0.007 1.007 35 H 0.037 0.963 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.180 0.820 40 H 0.190 0.810 41 H 0.246 0.754 42 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -7.024 8.438 9.715 14.660 hybrid contribution 1.263 -1.464 -0.535 2.006 sum -5.762 6.974 9.180 12.888 Atomic orbital electron populations 1.20358 0.87798 1.03014 1.02925 1.20278 0.96762 0.90302 1.00432 1.20689 0.90339 0.99250 1.12374 1.20568 0.97459 0.82426 1.02529 1.20814 0.91807 0.98768 0.90287 1.61909 1.40201 1.05702 1.18294 1.19485 0.91368 0.86863 0.94215 1.21431 1.39410 1.00811 0.94270 0.92573 1.25707 0.95452 0.94908 1.02793 1.70032 1.43522 1.05562 1.37576 0.85524 0.77867 0.78198 0.80228 1.19265 1.20125 1.20896 1.20339 0.91480 0.84035 1.03206 1.22456 0.99919 0.96111 0.87457 1.21833 1.05399 0.97454 0.98583 1.22086 1.03850 1.01049 0.96618 1.24772 1.01991 0.89910 0.95294 1.84070 1.53689 1.32191 1.39291 1.41921 1.07363 1.06998 1.54922 0.73942 1.19229 0.84783 0.90662 1.24638 1.19460 0.83267 0.84789 0.71901 1.90866 1.18254 1.84194 1.49166 1.84608 1.41919 1.20925 1.85679 0.90097 0.90027 0.91882 0.82359 0.93453 0.86599 1.00681 0.96311 0.92760 0.90378 0.90663 0.82047 0.80992 0.75363 0.70454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.23 9.81 71.24 0.70 -1.53 16 2 C -0.07 -2.22 6.22 -19.54 -0.12 -2.34 16 3 C -0.20 -6.38 10.66 22.01 0.23 -6.15 16 4 C 0.09 3.06 6.04 41.44 0.25 3.31 16 5 C 0.11 3.55 5.35 85.56 0.46 4.01 16 6 N -0.54 -21.28 4.39 -909.96 -3.99 -25.28 16 7 C 0.21 10.06 4.57 85.56 0.39 10.45 16 8 C -0.52 -28.47 8.29 25.60 0.21 -28.26 16 9 H 0.06 3.12 7.25 -2.91 -0.02 3.10 16 10 C 0.01 0.56 5.46 84.66 0.46 1.02 16 11 N -0.93 -53.34 13.29 21.45 0.28 -53.06 16 12 Si 0.96 44.04 29.54 68.60 2.03 46.07 16 13 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 14 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 15 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 16 C 0.14 4.89 5.35 85.56 0.46 5.34 16 17 C -0.01 -0.28 6.28 24.83 0.16 -0.12 16 18 C -0.21 -5.34 9.58 22.19 0.21 -5.13 16 19 C -0.22 -4.69 10.91 22.19 0.24 -4.44 16 20 C -0.05 -1.23 12.09 66.97 0.81 -0.42 16 21 O -0.20 -6.48 10.65 -2.56 -0.03 -6.50 16 22 N -0.52 -17.81 5.26 -172.33 -0.91 -18.72 16 23 H 0.42 14.46 8.41 -92.71 -0.78 13.69 16 24 C -0.08 -2.85 7.10 40.32 0.29 -2.57 16 25 C 0.56 18.12 8.30 69.97 0.58 18.70 16 26 O -0.53 -18.43 15.62 19.45 0.30 -18.13 16 27 O -0.52 -13.88 13.44 -58.14 -0.78 -14.66 16 28 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 30 H 0.06 1.85 6.54 -2.39 -0.02 1.83 16 31 H 0.16 4.34 8.06 -2.91 -0.02 4.32 16 32 H 0.05 1.43 8.05 -2.39 -0.02 1.41 16 33 H 0.12 3.16 6.21 -2.39 -0.01 3.15 16 34 H -0.02 -1.26 8.12 -2.38 -0.02 -1.28 16 35 H 0.02 0.98 6.07 -2.39 -0.01 0.96 16 36 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 37 H 0.08 3.22 6.59 -2.39 -0.02 3.20 16 38 H 0.08 2.36 8.05 -2.38 -0.02 2.34 16 39 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 40 H 0.17 2.58 8.06 -2.91 -0.02 2.55 16 41 H 0.23 3.36 8.06 -2.91 -0.02 3.34 16 42 H 0.43 6.97 9.11 -74.06 -0.67 6.30 16 Total: -1.00 -69.96 360.74 1.86 -68.10 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: -0.38 Total: 30.29 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: 5.33 Total: -8.11 kcal Atomic # 7 Polarization: -92.43 SS G_CDS: -4.62 Total: -97.05 kcal Atomic # 8 Polarization: -38.79 SS G_CDS: -0.51 Total: -39.30 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -69.96 1.86 -68.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600189910.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.058 kcal (2) G-P(sol) polarization free energy of solvation -69.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds