Wall clock time and date at job start Tue Mar 31 2020 13:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37655 * 120.04139 * 2 1 4 4 C 1.39137 * 120.07728 * 180.25348 * 3 2 1 5 5 N 1.39402 * 119.91696 * 179.72228 * 4 3 2 6 6 C 1.34774 * 120.00291 * 324.25119 * 5 4 3 7 7 O 1.21574 * 120.00014 * 354.43837 * 6 5 4 8 8 N 1.34781 * 119.99822 * 174.42977 * 6 5 4 9 9 C 1.46504 * 119.99507 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.46443 * 184.94132 * 9 8 6 11 11 C 1.50701 * 115.55538 * 60.70901 * 10 9 8 12 12 H 1.08000 * 119.99471 * 269.39104 * 11 10 9 13 13 C 1.37869 * 120.00153 * 89.38064 * 11 10 9 14 14 N 1.31521 * 120.00219 * 3.37858 * 13 11 10 15 15 Si 1.86800 * 120.00169 * 183.37572 * 13 11 10 16 16 H 1.48505 * 109.47071 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.47090 * 119.99934 * 15 13 11 18 18 H 1.48496 * 109.47470 * 240.00030 * 15 13 11 19 19 C 1.53005 * 117.49881 * 275.03306 * 10 9 8 20 20 C 1.53009 * 117.49491 * 206.37628 * 10 9 8 21 21 C 1.39173 * 120.15962 * 359.45185 * 4 3 2 22 22 C 1.37621 * 120.07654 * 0.26825 * 21 4 3 23 23 C 1.39795 * 120.03808 * 179.70214 * 2 1 3 24 24 C 1.47454 * 120.07941 * 0.04368 * 23 2 1 25 25 O 1.21503 * 119.99883 * 353.61933 * 24 23 2 26 26 O 1.34749 * 119.99723 * 173.61624 * 24 23 2 27 27 H 1.08999 * 109.47210 * 263.67491 * 1 2 3 28 28 H 1.09000 * 109.47096 * 23.67013 * 1 2 3 29 29 H 1.08994 * 109.47407 * 143.66894 * 1 2 3 30 30 H 1.07998 * 119.96326 * 359.97438 * 3 2 1 31 31 H 0.97001 * 119.99532 * 144.53724 * 5 4 3 32 32 H 0.96996 * 120.00036 * 0.02562 * 8 6 5 33 33 H 1.08993 * 109.47141 * 304.93746 * 9 8 6 34 34 H 1.08997 * 109.47161 * 64.94400 * 9 8 6 35 35 H 0.96993 * 120.00021 * 185.00522 * 14 13 11 36 36 H 1.09000 * 117.49682 * 0.02562 * 19 10 9 37 37 H 1.09003 * 117.49968 * 145.02744 * 19 10 9 38 38 H 1.09000 * 117.49371 * 214.97965 * 20 10 9 39 39 H 1.08993 * 117.49698 * 359.97438 * 20 10 9 40 40 H 1.07996 * 119.96241 * 180.29885 * 21 4 3 41 41 H 1.08002 * 120.03466 * 179.97438 * 22 21 4 42 42 H 0.96705 * 116.99785 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1916 0.0000 4 6 3.5875 1.1925 -0.0053 5 7 4.2820 2.4012 -0.0112 6 6 3.7938 3.4557 -0.6940 7 8 2.8030 3.3256 -1.3863 8 7 4.4039 4.6544 -0.6090 9 6 3.8729 5.8008 -1.3509 10 6 4.8117 6.9969 -1.1815 11 6 6.2174 6.7966 -1.6865 12 1 6.9797 6.4139 -1.0240 13 6 6.5302 7.1018 -2.9941 14 7 5.6192 7.6298 -3.7822 15 14 8.2479 6.7654 -3.6465 16 1 9.0795 6.1723 -2.5686 17 1 8.1674 5.8178 -4.7871 18 1 8.8622 8.0381 -4.1027 19 6 4.6250 7.8713 0.0602 20 6 4.2054 8.3953 -1.3156 21 6 4.2875 -0.0103 0.0008 22 6 3.6051 -1.2054 0.0067 23 6 2.2068 -1.2102 0.0063 24 6 1.4721 -2.4887 0.0120 25 8 0.2627 -2.4938 0.1281 26 8 2.1421 -3.6512 -0.1117 27 1 -0.3633 -0.1132 1.0214 28 1 -0.3633 0.9412 -0.4126 29 1 -0.3634 -0.8278 -0.6088 30 1 1.6562 2.1270 -0.0004 31 1 5.1187 2.4821 0.4728 32 1 5.1946 4.7582 -0.0568 33 1 3.7964 5.5457 -2.4078 34 1 2.8856 6.0565 -0.9664 35 1 5.8162 7.7774 -4.7204 36 1 3.8336 7.5941 0.7565 37 1 5.5189 8.3020 0.5115 38 1 4.8235 9.1704 -1.7687 39 1 3.1379 8.4630 -1.5248 40 1 5.3674 -0.0059 0.0016 41 1 4.1490 -2.1385 0.0110 42 1 1.6174 -4.4635 -0.1022 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600267075.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:19 Heat of formation + Delta-G solvation = -68.930765 kcal Electronic energy + Delta-G solvation = -25732.938146 eV Core-core repulsion = 21871.770358 eV Total energy + Delta-G solvation = -3861.167788 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.87590 -40.12329 -38.49934 -36.86786 -36.33404 -34.80149 -33.53938 -32.51318 -32.00615 -30.16078 -27.33085 -26.49183 -25.35278 -23.92547 -22.49173 -21.31224 -21.01720 -20.47589 -19.51218 -18.38141 -17.88650 -17.36580 -17.28432 -16.07043 -15.86035 -15.57375 -15.04034 -14.75519 -14.64005 -14.34878 -14.03060 -13.66884 -13.62268 -13.33732 -13.20623 -12.80869 -12.64495 -12.43060 -12.29805 -11.97056 -11.67795 -11.60952 -11.34273 -11.06287 -10.98145 -10.58708 -10.34548 -10.30399 -10.27767 -9.92942 -9.54777 -9.16445 -8.88180 -8.56838 -8.47598 -8.26620 -8.06391 -6.14226 -4.24033 0.57557 1.26830 2.38100 2.80047 2.91299 3.20681 3.30071 3.30762 3.37300 3.75908 4.29562 4.46263 4.66615 4.70666 4.94518 5.11310 5.13559 5.25523 5.30817 5.39979 5.65963 5.70891 5.82820 5.94023 5.96896 6.03487 6.18733 6.26036 6.26748 6.39033 6.43452 6.44556 6.49418 6.63291 6.70528 6.89479 7.04508 7.08635 7.21883 7.32698 7.52404 7.73959 7.74136 8.25985 8.31778 8.77443 8.85290 9.43765 10.93364 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020953 B = 0.002679 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.034340 B =10450.335429 C =11181.748585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.007 3.993 3 C -0.140 4.140 4 C 0.229 3.771 5 N -0.692 5.692 6 C 0.695 3.305 7 O -0.579 6.579 8 N -0.709 5.709 9 C 0.180 3.820 10 C 0.020 3.980 11 C -0.499 4.499 12 H 0.059 0.941 13 C 0.073 3.927 14 N -0.874 5.874 15 Si 0.889 3.111 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.284 1.284 19 C -0.213 4.213 20 C -0.136 4.136 21 C -0.177 4.177 22 C -0.033 4.033 23 C -0.169 4.169 24 C 0.529 3.471 25 O -0.515 6.515 26 O -0.516 6.516 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.145 0.855 31 H 0.409 0.591 32 H 0.399 0.601 33 H 0.070 0.930 34 H 0.038 0.962 35 H 0.261 0.739 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.064 0.936 40 H 0.134 0.866 41 H 0.139 0.861 42 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.607 -16.544 9.710 19.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.006 3.994 3 C -0.161 4.161 4 C 0.130 3.870 5 N -0.339 5.339 6 C 0.395 3.605 7 O -0.457 6.457 8 N -0.360 5.360 9 C 0.056 3.944 10 C 0.019 3.981 11 C -0.536 4.536 12 H 0.078 0.922 13 C -0.131 4.131 14 N -0.510 5.510 15 Si 0.717 3.283 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.210 1.210 19 C -0.250 4.250 20 C -0.175 4.175 21 C -0.198 4.198 22 C -0.052 4.052 23 C -0.171 4.171 24 C 0.375 3.625 25 O -0.406 6.406 26 O -0.328 6.328 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.110 0.890 30 H 0.163 0.837 31 H 0.245 0.755 32 H 0.233 0.767 33 H 0.088 0.912 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.082 0.918 40 H 0.152 0.848 41 H 0.157 0.843 42 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -4.596 -15.988 8.895 18.864 hybrid contribution 1.531 -0.536 -0.107 1.626 sum -3.065 -16.524 8.787 18.965 Atomic orbital electron populations 1.21124 0.89842 1.03550 1.03408 1.19844 0.96769 0.90604 0.92226 1.21041 0.92548 0.98591 1.03878 1.17783 0.91323 0.84778 0.93072 1.42779 1.27033 1.09864 1.54195 1.16046 0.83621 0.80506 0.80299 1.90927 1.27376 1.83611 1.43746 1.45189 1.32071 1.07782 1.50988 1.20963 0.94134 0.83715 0.95562 1.19061 0.95433 0.87728 0.95890 1.20350 0.92458 1.44611 0.96213 0.92237 1.24985 0.96984 0.93870 0.97238 1.70003 1.34045 1.41552 1.05354 0.86593 0.84651 0.78007 0.79063 1.19753 1.20943 1.20989 1.23073 1.01458 1.09006 0.91466 1.22446 0.98271 0.99689 0.97045 1.20860 1.00370 0.90674 1.07931 1.21122 0.92427 0.98163 0.93500 1.18749 0.93505 0.89635 1.15218 1.20859 0.85371 0.84122 0.72106 1.90844 1.15351 1.87634 1.46731 1.84579 1.45510 1.17146 1.85548 0.90523 0.91598 0.89031 0.83706 0.75504 0.76681 0.91203 0.94363 0.92864 0.91722 0.90372 0.89211 0.91781 0.84808 0.84325 0.73098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.49 8.72 36.00 0.31 -1.18 16 2 C 0.01 0.09 5.91 -104.25 -0.62 -0.53 16 3 C -0.14 -1.99 8.24 -39.46 -0.33 -2.32 16 4 C 0.23 3.02 6.23 -83.74 -0.52 2.50 16 5 N -0.69 -9.16 5.32 -14.22 -0.08 -9.24 16 6 C 0.69 12.22 8.27 -86.92 -0.72 11.50 16 7 O -0.58 -12.27 14.18 5.30 0.08 -12.20 16 8 N -0.71 -12.65 5.41 -65.23 -0.35 -13.01 16 9 C 0.18 3.82 5.52 -4.04 -0.02 3.80 16 10 C 0.02 0.44 1.57 -155.65 -0.24 0.20 16 11 C -0.50 -12.33 8.54 -34.44 -0.29 -12.62 16 12 H 0.06 1.44 7.82 -52.49 -0.41 1.03 16 13 C 0.07 1.90 5.42 -17.82 -0.10 1.80 16 14 N -0.87 -23.67 12.34 55.43 0.68 -22.99 16 15 Si 0.89 20.08 29.54 -169.99 -5.02 15.06 16 16 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 C -0.21 -4.23 9.95 -26.69 -0.27 -4.49 16 20 C -0.14 -3.02 8.98 -26.69 -0.24 -3.26 16 21 C -0.18 -1.90 9.94 -39.46 -0.39 -2.29 16 22 C -0.03 -0.34 9.60 -39.21 -0.38 -0.72 16 23 C -0.17 -2.02 5.88 -104.97 -0.62 -2.64 16 24 C 0.53 5.93 8.19 34.48 0.28 6.21 16 25 O -0.52 -6.77 14.12 -19.27 -0.27 -7.04 16 26 O -0.52 -4.09 12.69 -40.63 -0.52 -4.61 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 0.77 8.04 -51.93 -0.42 0.35 16 29 H 0.09 1.17 5.85 -51.93 -0.30 0.86 16 30 H 0.15 2.29 6.58 -52.49 -0.35 1.94 16 31 H 0.41 4.02 8.84 -40.82 -0.36 3.66 16 32 H 0.40 6.32 8.35 -40.82 -0.34 5.98 16 33 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 34 H 0.04 0.79 8.11 -51.93 -0.42 0.37 16 35 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 38 H 0.09 2.17 7.97 -51.93 -0.41 1.75 16 39 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 40 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 41 H 0.14 1.12 7.62 -52.49 -0.40 0.72 16 42 H 0.41 1.39 9.11 45.56 0.42 1.81 16 LS Contribution 361.24 15.07 5.44 5.44 Total: -1.00 -31.36 361.24 -8.84 -40.20 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -4.67 Total: 12.42 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -4.13 Total: -4.04 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: 0.26 Total: -45.23 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.71 Total: -23.85 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.36 -8.84 -40.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600267075.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.731 kcal (2) G-P(sol) polarization free energy of solvation -31.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds