Wall clock time and date at job start Tue Mar 31 2020 13:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37655 * 120.04139 * 2 1 4 4 C 1.39137 * 120.07728 * 180.25348 * 3 2 1 5 5 N 1.39402 * 119.91696 * 179.72228 * 4 3 2 6 6 C 1.34774 * 120.00291 * 324.25119 * 5 4 3 7 7 O 1.21574 * 120.00014 * 354.43837 * 6 5 4 8 8 N 1.34781 * 119.99822 * 174.42977 * 6 5 4 9 9 C 1.46504 * 119.99507 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.46443 * 184.94132 * 9 8 6 11 11 C 1.50701 * 115.55538 * 60.70901 * 10 9 8 12 12 H 1.08000 * 119.99471 * 269.39104 * 11 10 9 13 13 C 1.37869 * 120.00153 * 89.38064 * 11 10 9 14 14 N 1.31521 * 120.00219 * 3.37858 * 13 11 10 15 15 Si 1.86800 * 120.00169 * 183.37572 * 13 11 10 16 16 H 1.48505 * 109.47071 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.47090 * 119.99934 * 15 13 11 18 18 H 1.48496 * 109.47470 * 240.00030 * 15 13 11 19 19 C 1.53005 * 117.49881 * 275.03306 * 10 9 8 20 20 C 1.53009 * 117.49491 * 206.37628 * 10 9 8 21 21 C 1.39173 * 120.15962 * 359.45185 * 4 3 2 22 22 C 1.37621 * 120.07654 * 0.26825 * 21 4 3 23 23 C 1.39795 * 120.03808 * 179.70214 * 2 1 3 24 24 C 1.47454 * 120.07941 * 0.04368 * 23 2 1 25 25 O 1.21503 * 119.99883 * 353.61933 * 24 23 2 26 26 O 1.34749 * 119.99723 * 173.61624 * 24 23 2 27 27 H 1.08999 * 109.47210 * 263.67491 * 1 2 3 28 28 H 1.09000 * 109.47096 * 23.67013 * 1 2 3 29 29 H 1.08994 * 109.47407 * 143.66894 * 1 2 3 30 30 H 1.07998 * 119.96326 * 359.97438 * 3 2 1 31 31 H 0.97001 * 119.99532 * 144.53724 * 5 4 3 32 32 H 0.96996 * 120.00036 * 0.02562 * 8 6 5 33 33 H 1.08993 * 109.47141 * 304.93746 * 9 8 6 34 34 H 1.08997 * 109.47161 * 64.94400 * 9 8 6 35 35 H 0.96993 * 120.00021 * 185.00522 * 14 13 11 36 36 H 1.09000 * 117.49682 * 0.02562 * 19 10 9 37 37 H 1.09003 * 117.49968 * 145.02744 * 19 10 9 38 38 H 1.09000 * 117.49371 * 214.97965 * 20 10 9 39 39 H 1.08993 * 117.49698 * 359.97438 * 20 10 9 40 40 H 1.07996 * 119.96241 * 180.29885 * 21 4 3 41 41 H 1.08002 * 120.03466 * 179.97438 * 22 21 4 42 42 H 0.96705 * 116.99785 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1916 0.0000 4 6 3.5875 1.1925 -0.0053 5 7 4.2820 2.4012 -0.0112 6 6 3.7938 3.4557 -0.6940 7 8 2.8030 3.3256 -1.3863 8 7 4.4039 4.6544 -0.6090 9 6 3.8729 5.8008 -1.3509 10 6 4.8117 6.9969 -1.1815 11 6 6.2174 6.7966 -1.6865 12 1 6.9797 6.4139 -1.0240 13 6 6.5302 7.1018 -2.9941 14 7 5.6192 7.6298 -3.7822 15 14 8.2479 6.7654 -3.6465 16 1 9.0795 6.1723 -2.5686 17 1 8.1674 5.8178 -4.7871 18 1 8.8622 8.0381 -4.1027 19 6 4.6250 7.8713 0.0602 20 6 4.2054 8.3953 -1.3156 21 6 4.2875 -0.0103 0.0008 22 6 3.6051 -1.2054 0.0067 23 6 2.2068 -1.2102 0.0063 24 6 1.4721 -2.4887 0.0120 25 8 0.2627 -2.4938 0.1281 26 8 2.1421 -3.6512 -0.1117 27 1 -0.3633 -0.1132 1.0214 28 1 -0.3633 0.9412 -0.4126 29 1 -0.3634 -0.8278 -0.6088 30 1 1.6562 2.1270 -0.0004 31 1 5.1187 2.4821 0.4728 32 1 5.1946 4.7582 -0.0568 33 1 3.7964 5.5457 -2.4078 34 1 2.8856 6.0565 -0.9664 35 1 5.8162 7.7774 -4.7204 36 1 3.8336 7.5941 0.7565 37 1 5.5189 8.3020 0.5115 38 1 4.8235 9.1704 -1.7687 39 1 3.1379 8.4630 -1.5248 40 1 5.3674 -0.0059 0.0016 41 1 4.1490 -2.1385 0.0110 42 1 1.6174 -4.4635 -0.1022 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600267075.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:19 Heat of formation + Delta-G solvation = -89.509983 kcal Electronic energy + Delta-G solvation = -25733.830528 eV Core-core repulsion = 21871.770358 eV Total energy + Delta-G solvation = -3862.060170 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.91307 -41.20097 -39.59985 -38.49950 -37.13409 -35.98588 -35.08146 -33.92855 -33.44138 -31.21546 -28.27854 -28.14010 -27.14029 -24.99335 -23.42612 -22.93115 -22.09634 -21.73126 -21.23887 -19.52613 -18.95524 -18.51808 -18.19959 -17.77129 -16.81201 -16.71939 -16.59747 -16.14935 -16.07847 -15.69555 -15.23329 -15.08528 -14.53052 -14.52039 -14.41477 -14.13459 -13.86052 -13.58631 -13.41524 -13.34503 -13.18889 -12.90637 -12.84704 -12.46404 -12.33620 -12.27175 -11.99782 -11.55997 -11.38543 -11.26738 -11.15779 -10.98994 -10.39611 -10.12274 -9.89982 -9.81762 -9.20737 -8.09407 -6.22772 -0.37024 0.34987 1.41576 1.43932 1.45664 1.53948 1.60517 2.07391 2.16387 2.43069 2.75946 3.17909 3.19948 3.57560 3.75161 3.81632 4.13068 4.17028 4.25920 4.38656 4.47937 4.56227 4.66643 4.72238 4.73246 4.75215 4.84262 4.97352 5.04422 5.09686 5.14689 5.23067 5.32156 5.35638 5.49737 5.55971 5.60584 5.67816 5.72480 5.78229 5.89755 6.00351 6.37016 6.85382 7.04027 7.04187 7.46714 7.49630 8.97967 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020953 B = 0.002679 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.034340 B =10450.335429 C =11181.748585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.008 4.008 3 C -0.158 4.158 4 C 0.207 3.793 5 N -0.673 5.673 6 C 0.696 3.304 7 O -0.620 6.620 8 N -0.703 5.703 9 C 0.197 3.803 10 C 0.000 4.000 11 C -0.499 4.499 12 H 0.066 0.934 13 C 0.022 3.978 14 N -0.908 5.908 15 Si 0.947 3.053 16 H -0.258 1.258 17 H -0.290 1.290 18 H -0.287 1.287 19 C -0.177 4.177 20 C -0.151 4.151 21 C -0.164 4.164 22 C -0.023 4.023 23 C -0.176 4.176 24 C 0.534 3.466 25 O -0.540 6.540 26 O -0.504 6.504 27 H 0.082 0.918 28 H 0.060 0.940 29 H 0.085 0.915 30 H 0.120 0.880 31 H 0.427 0.573 32 H 0.411 0.589 33 H 0.027 0.973 34 H 0.041 0.959 35 H 0.257 0.743 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.166 0.834 41 H 0.170 0.830 42 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.753 -18.758 11.342 21.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.009 4.009 3 C -0.178 4.178 4 C 0.110 3.890 5 N -0.321 5.321 6 C 0.396 3.604 7 O -0.500 6.500 8 N -0.356 5.356 9 C 0.072 3.928 10 C -0.001 4.001 11 C -0.537 4.537 12 H 0.084 0.916 13 C -0.178 4.178 14 N -0.546 5.546 15 Si 0.774 3.226 16 H -0.182 1.182 17 H -0.216 1.216 18 H -0.214 1.214 19 C -0.215 4.215 20 C -0.189 4.189 21 C -0.184 4.184 22 C -0.042 4.042 23 C -0.178 4.178 24 C 0.381 3.619 25 O -0.433 6.433 26 O -0.318 6.318 27 H 0.100 0.900 28 H 0.079 0.921 29 H 0.104 0.896 30 H 0.138 0.862 31 H 0.267 0.733 32 H 0.247 0.753 33 H 0.045 0.955 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.184 0.816 41 H 0.188 0.812 42 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges -2.691 -18.260 10.584 21.277 hybrid contribution 0.928 0.032 -0.574 1.092 sum -1.763 -18.229 10.010 20.871 Atomic orbital electron populations 1.21062 0.89789 1.02971 1.03577 1.19930 0.97087 0.90978 0.92915 1.20922 0.93400 0.98058 1.05457 1.18000 0.91098 0.85419 0.94470 1.42434 1.27442 1.08814 1.53436 1.16136 0.83026 0.81054 0.80161 1.90907 1.29199 1.84307 1.45571 1.44906 1.32538 1.07269 1.50887 1.20499 0.94308 0.84444 0.93521 1.19092 0.94780 0.88070 0.98116 1.20699 0.93625 1.43228 0.96146 0.91569 1.25702 1.00010 0.94201 0.97881 1.70132 1.35846 1.43298 1.05314 0.85676 0.81109 0.77385 0.78456 1.18201 1.21647 1.21379 1.23052 1.02041 1.05929 0.90436 1.22356 0.98163 0.99093 0.99320 1.21174 1.01871 0.89440 1.05939 1.21474 0.91691 0.99286 0.91725 1.18968 0.94525 0.89648 1.14663 1.20703 0.84888 0.84731 0.71583 1.90843 1.16412 1.88108 1.47911 1.84514 1.45353 1.17231 1.84695 0.89976 0.92059 0.89642 0.86204 0.73320 0.75286 0.95463 0.94075 0.93363 0.89142 0.89757 0.91744 0.91242 0.81601 0.81223 0.70585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.93 8.72 71.24 0.62 -2.31 16 2 C -0.01 -0.21 5.91 -19.63 -0.12 -0.32 16 3 C -0.16 -4.54 8.24 22.35 0.18 -4.36 16 4 C 0.21 5.20 6.23 38.38 0.24 5.44 16 5 N -0.67 -16.85 5.32 -317.17 -1.69 -18.54 16 6 C 0.70 24.35 8.27 179.05 1.48 25.83 16 7 O -0.62 -26.99 14.18 -3.95 -0.06 -27.05 16 8 N -0.70 -24.70 5.41 -478.55 -2.59 -27.29 16 9 C 0.20 8.49 5.52 86.38 0.48 8.96 16 10 C 0.00 0.01 1.57 -52.92 -0.08 -0.07 16 11 C -0.50 -24.39 8.54 25.60 0.22 -24.17 16 12 H 0.07 3.08 7.82 -2.91 -0.02 3.06 16 13 C 0.02 1.16 5.42 84.65 0.46 1.62 16 14 N -0.91 -50.43 12.34 21.45 0.26 -50.16 16 15 Si 0.95 41.17 29.54 68.60 2.03 43.19 16 16 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 17 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 18 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16 19 C -0.18 -6.72 9.95 30.62 0.30 -6.42 16 20 C -0.15 -6.73 8.98 30.62 0.28 -6.45 16 21 C -0.16 -2.97 9.94 22.35 0.22 -2.75 16 22 C -0.02 -0.40 9.60 22.51 0.22 -0.18 16 23 C -0.18 -3.90 5.88 -20.09 -0.12 -4.02 16 24 C 0.53 10.91 8.19 70.25 0.58 11.49 16 25 O -0.54 -13.66 14.12 19.83 0.28 -13.38 16 26 O -0.50 -6.36 12.69 -56.60 -0.72 -7.08 16 27 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.06 1.52 8.04 -2.39 -0.02 1.50 16 29 H 0.09 2.23 5.85 -2.39 -0.01 2.21 16 30 H 0.12 4.01 6.58 -2.91 -0.02 4.00 16 31 H 0.43 7.30 8.84 -92.71 -0.82 6.48 16 32 H 0.41 12.32 8.35 -92.71 -0.77 11.55 16 33 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.04 1.72 8.11 -2.39 -0.02 1.71 16 35 H 0.26 13.86 8.32 -92.71 -0.77 13.09 16 36 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 37 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 38 H 0.06 3.18 7.97 -2.39 -0.02 3.16 16 39 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 40 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 41 H 0.17 1.90 7.62 -2.91 -0.02 1.87 16 42 H 0.43 1.54 9.11 -74.05 -0.67 0.86 16 Total: -1.00 -69.45 361.24 1.30 -68.14 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: -1.17 Total: 29.89 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 4.96 Total: 2.28 kcal Atomic # 7 Polarization: -91.98 SS G_CDS: -4.01 Total: -95.99 kcal Atomic # 8 Polarization: -47.02 SS G_CDS: -0.49 Total: -47.51 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.19 kcal Total: -69.45 1.30 -68.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600267075.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.366 kcal (2) G-P(sol) polarization free energy of solvation -69.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds