Wall clock time and date at job start Tue Mar 31 2020 13:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38268 * 119.88327 * 2 1 4 4 C 1.37965 * 120.22783 * 180.23358 * 3 2 1 5 5 C 1.39667 * 119.99239 * 359.49341 * 4 3 2 6 6 C 1.47738 * 120.11555 * 180.23498 * 5 4 3 7 7 O 1.21474 * 119.99898 * 179.97438 * 6 5 4 8 8 O 1.34709 * 120.00320 * 359.97438 * 6 5 4 9 9 C 1.39511 * 119.76665 * 0.25120 * 5 4 3 10 10 C 1.38632 * 119.77403 * 0.02562 * 9 5 4 11 11 N 1.39949 * 119.99894 * 180.02562 * 10 9 5 12 12 C 1.34781 * 119.99679 * 331.69071 * 11 10 9 13 13 O 1.21283 * 120.00265 * 4.42176 * 12 11 10 14 14 C 1.50701 * 119.99572 * 184.42835 * 12 11 10 15 15 N 1.46499 * 109.46981 * 179.97438 * 14 12 11 16 16 C 1.36940 * 119.99534 * 269.99618 * 15 14 12 17 17 H 1.08005 * 119.99495 * 190.25860 * 16 15 14 18 18 C 1.38800 * 120.00346 * 10.25839 * 16 15 14 19 19 N 1.31629 * 120.00162 * 22.87940 * 18 16 15 20 20 Si 1.86803 * 120.00393 * 202.87970 * 18 16 15 21 21 H 1.48502 * 109.46772 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47090 * 119.99920 * 20 18 16 23 23 H 1.48498 * 109.47201 * 240.00049 * 20 18 16 24 24 C 1.46500 * 120.00415 * 89.99718 * 15 14 12 25 25 C 1.52992 * 117.50080 * 194.47667 * 24 15 14 26 26 C 1.53002 * 60.00299 * 252.50793 * 25 24 15 27 27 H 1.09000 * 109.47168 * 270.27287 * 1 2 3 28 28 H 1.09008 * 109.47164 * 30.27689 * 1 2 3 29 29 H 1.08994 * 109.47058 * 150.27343 * 1 2 3 30 30 H 1.08004 * 119.88553 * 359.97438 * 3 2 1 31 31 H 1.08002 * 120.00172 * 179.77094 * 4 3 2 32 32 H 0.96704 * 117.00047 * 180.02562 * 8 6 5 33 33 H 1.07996 * 120.11392 * 179.97438 * 9 5 4 34 34 H 0.96996 * 120.00114 * 151.68179 * 11 10 9 35 35 H 1.09004 * 109.47253 * 299.99418 * 14 12 11 36 36 H 1.08993 * 109.47566 * 59.99054 * 14 12 11 37 37 H 0.96998 * 120.00061 * 184.98350 * 19 18 16 38 38 H 1.09002 * 115.54505 * 340.18453 * 24 15 14 39 39 H 1.09003 * 117.50120 * 359.97438 * 25 24 15 40 40 H 1.09002 * 117.50468 * 145.02161 * 25 24 15 41 41 H 1.08999 * 117.50238 * 252.51355 * 26 25 24 42 42 H 1.08997 * 117.52025 * 107.47753 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1988 0.0000 4 6 3.5755 1.2071 -0.0049 5 6 4.2809 0.0017 0.0009 6 6 5.7583 0.0075 0.0010 7 8 6.3697 -1.0421 0.0064 8 8 6.4274 1.1767 -0.0051 9 6 3.5856 -1.2077 0.0062 10 6 2.1993 -1.2048 0.0053 11 7 1.4970 -2.4153 0.0112 12 6 2.0482 -3.5167 -0.5362 13 8 3.1833 -3.4794 -0.9617 14 6 1.2538 -4.7947 -0.6197 15 7 2.0686 -5.8358 -1.2508 16 6 2.0393 -5.9980 -2.6103 17 1 2.5044 -6.8622 -3.0611 18 6 1.4120 -5.0517 -3.4088 19 7 1.2476 -3.8226 -2.9672 20 14 0.8008 -5.5223 -5.1101 21 1 1.1057 -6.9527 -5.3674 22 1 -0.6665 -5.3070 -5.1861 23 1 1.4781 -4.6813 -6.1295 24 6 2.9148 -6.7034 -0.4277 25 6 3.9849 -7.5308 -1.1425 26 6 2.7370 -8.2153 -0.5811 27 1 -0.3633 0.0049 1.0276 28 1 -0.3634 0.8875 -0.5182 29 1 -0.3633 -0.8924 -0.5096 30 1 1.6521 2.1320 -0.0004 31 1 4.1099 2.1457 -0.0086 32 1 7.3933 1.1298 -0.0052 33 1 4.1254 -2.1431 0.0103 34 1 0.6137 -2.4616 0.4093 35 1 0.9708 -5.1128 0.3838 36 1 0.3559 -4.6263 -1.2141 37 1 0.7461 -3.1810 -3.4941 38 1 3.1526 -6.3228 0.5656 39 1 4.0591 -7.4300 -2.2254 40 1 4.9271 -7.6948 -0.6196 41 1 2.8582 -8.8294 0.3112 42 1 1.9902 -8.5644 -1.2941 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600355597.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:20 Heat of formation + Delta-G solvation = -34.315059 kcal Electronic energy + Delta-G solvation = -27053.059598 eV Core-core repulsion = 23193.392859 eV Total energy + Delta-G solvation = -3859.666738 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.36688 -39.45827 -37.91589 -36.73926 -35.91689 -34.10612 -33.47051 -32.34808 -30.63520 -29.53063 -27.64365 -26.52941 -24.00762 -23.30235 -22.34161 -21.44396 -20.62831 -20.06379 -19.59912 -17.96291 -17.50980 -16.59295 -16.10302 -15.80857 -15.49130 -15.42603 -14.90976 -14.62291 -14.36303 -13.95370 -13.83730 -13.47244 -13.23507 -13.04002 -12.96325 -12.43155 -12.24283 -11.98713 -11.81056 -11.49900 -11.37298 -11.28464 -11.17064 -10.83811 -10.71481 -10.61907 -10.39879 -10.36199 -10.07672 -9.86180 -9.71341 -9.43297 -8.71789 -8.53231 -8.31644 -7.53042 -6.93558 -5.92615 -3.21133 0.93606 1.69798 2.74936 3.13862 3.33345 3.43335 3.45241 3.78632 3.90845 4.26536 4.45855 4.85229 4.96084 5.02342 5.10742 5.26316 5.35373 5.36233 5.55298 5.66708 5.72659 5.80771 5.82431 5.99198 6.04577 6.10683 6.14872 6.23945 6.42513 6.46260 6.49891 6.51326 6.58724 6.66136 6.74891 6.85669 6.90400 7.00009 7.06418 7.49533 7.71229 8.06422 8.11262 8.31208 9.03661 9.43860 9.71627 10.12025 11.16237 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012289 B = 0.004471 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.848811 B = 6261.451868 C = 7054.969785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.097 4.097 3 C -0.117 4.117 4 C -0.098 4.098 5 C -0.119 4.119 6 C 0.526 3.474 7 O -0.507 6.507 8 O -0.517 6.517 9 C -0.067 4.067 10 C 0.172 3.828 11 N -0.684 5.684 12 C 0.524 3.476 13 O -0.498 6.498 14 C 0.168 3.832 15 N -0.539 5.539 16 C -0.243 4.243 17 H 0.083 0.917 18 C 0.000 4.000 19 N -0.899 5.899 20 Si 0.904 3.096 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.293 1.293 24 C 0.129 3.871 25 C -0.200 4.200 26 C -0.221 4.221 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.126 0.874 31 H 0.130 0.870 32 H 0.409 0.591 33 H 0.165 0.835 34 H 0.400 0.600 35 H 0.045 0.955 36 H 0.109 0.891 37 H 0.253 0.747 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.482 8.999 9.688 13.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.100 4.100 3 C -0.136 4.136 4 C -0.117 4.117 5 C -0.121 4.121 6 C 0.370 3.630 7 O -0.395 6.395 8 O -0.329 6.329 9 C -0.088 4.088 10 C 0.074 3.926 11 N -0.330 5.330 12 C 0.312 3.688 13 O -0.369 6.369 14 C 0.037 3.963 15 N -0.253 5.253 16 C -0.372 4.372 17 H 0.101 0.899 18 C -0.197 4.197 19 N -0.544 5.544 20 Si 0.734 3.266 21 H -0.204 1.204 22 H -0.216 1.216 23 H -0.220 1.220 24 C 0.019 3.981 25 C -0.239 4.239 26 C -0.261 4.261 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.144 0.856 31 H 0.148 0.852 32 H 0.267 0.733 33 H 0.182 0.818 34 H 0.234 0.766 35 H 0.063 0.937 36 H 0.126 0.874 37 H 0.064 0.936 38 H 0.109 0.891 39 H 0.115 0.885 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.974 8.748 9.176 12.714 hybrid contribution 0.037 0.056 -1.065 1.067 sum -0.937 8.803 8.111 12.006 Atomic orbital electron populations 1.20764 0.90883 1.03550 1.02041 1.19933 0.96334 0.91994 1.01750 1.20693 0.93640 0.96981 1.02260 1.21183 0.94140 0.96982 0.99403 1.18841 0.88480 0.94787 1.09955 1.21003 0.89061 0.80752 0.72189 1.90919 1.69900 1.33069 1.45652 1.84557 1.26475 1.35494 1.86341 1.21747 0.93043 0.98761 0.95247 1.17576 0.90819 0.86179 0.97994 1.44161 1.20726 1.07897 1.60182 1.22523 0.87920 0.84936 0.73462 1.90508 1.19352 1.83406 1.43588 1.20747 0.95097 0.84784 0.95687 1.43524 1.46008 1.32578 1.03205 1.19324 1.32031 1.04361 0.81451 0.89935 1.24688 1.02634 0.94292 0.98118 1.69880 1.43137 1.01711 1.39685 0.86179 0.78357 0.77931 0.84113 1.20355 1.21580 1.21987 1.20926 0.95125 0.87402 0.94610 1.23125 0.92463 1.06982 1.01352 1.23406 1.01059 0.99169 1.02500 0.91213 0.91296 0.90838 0.85562 0.85208 0.73297 0.81779 0.76552 0.93716 0.87352 0.93618 0.89107 0.88531 0.90536 0.90613 0.89250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 9.44 36.00 0.34 -0.95 16 2 C -0.10 -1.40 5.90 -104.35 -0.62 -2.01 16 3 C -0.12 -1.52 9.67 -39.67 -0.38 -1.91 16 4 C -0.10 -1.37 9.61 -39.15 -0.38 -1.75 16 5 C -0.12 -2.04 5.87 -105.01 -0.62 -2.66 16 6 C 0.53 8.81 8.27 34.61 0.29 9.09 16 7 O -0.51 -10.31 17.13 -19.25 -0.33 -10.64 16 8 O -0.52 -6.24 12.68 -40.52 -0.51 -6.76 16 9 C -0.07 -1.33 8.31 -38.96 -0.32 -1.65 16 10 C 0.17 3.06 6.39 -83.74 -0.54 2.53 16 11 N -0.68 -12.15 4.89 -9.89 -0.05 -12.20 16 12 C 0.52 11.60 5.71 -10.98 -0.06 11.53 16 13 O -0.50 -13.29 13.13 5.55 0.07 -13.22 16 14 C 0.17 3.59 5.48 -5.19 -0.03 3.56 16 15 N -0.54 -12.86 2.38 -167.03 -0.40 -13.26 16 16 C -0.24 -6.41 8.97 -15.06 -0.14 -6.54 16 17 H 0.08 2.19 6.19 -52.48 -0.33 1.86 16 18 C 0.00 -0.01 4.93 -17.43 -0.09 -0.09 16 19 N -0.90 -24.21 8.82 55.49 0.49 -23.72 16 20 Si 0.90 21.42 29.61 -169.99 -5.03 16.38 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 C 0.13 2.72 6.60 -67.93 -0.45 2.27 16 25 C -0.20 -4.02 9.77 -26.73 -0.26 -4.28 16 26 C -0.22 -4.08 10.13 -26.73 -0.27 -4.35 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.67 8.09 -51.92 -0.42 0.25 16 29 H 0.07 0.90 7.03 -51.93 -0.37 0.53 16 30 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 31 H 0.13 1.51 7.61 -52.49 -0.40 1.11 16 32 H 0.41 3.00 9.11 45.56 0.42 3.41 16 33 H 0.17 3.83 5.29 -52.49 -0.28 3.55 16 34 H 0.40 5.61 7.54 -40.82 -0.31 5.31 16 35 H 0.04 0.80 8.07 -51.93 -0.42 0.38 16 36 H 0.11 2.45 6.36 -51.93 -0.33 2.12 16 37 H 0.25 6.76 8.32 -40.82 -0.34 6.42 16 38 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 39 H 0.10 2.14 6.41 -51.93 -0.33 1.80 16 40 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.09 1.75 8.14 -51.93 -0.42 1.32 16 LS Contribution 353.81 15.07 5.33 5.33 Total: -1.00 -34.02 353.81 -8.38 -42.40 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -4.43 Total: 12.90 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -3.52 Total: 2.78 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: 0.04 Total: -49.18 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -0.77 Total: -30.61 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.02 -8.38 -42.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600355597.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.084 kcal (2) G-P(sol) polarization free energy of solvation -34.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds