Wall clock time and date at job start Tue Mar 31 2020 13:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38268 * 119.88327 * 2 1 4 4 C 1.37965 * 120.22783 * 180.23358 * 3 2 1 5 5 C 1.39667 * 119.99239 * 359.49341 * 4 3 2 6 6 C 1.47738 * 120.11555 * 180.23498 * 5 4 3 7 7 O 1.21474 * 119.99898 * 179.97438 * 6 5 4 8 8 O 1.34709 * 120.00320 * 359.97438 * 6 5 4 9 9 C 1.39511 * 119.76665 * 0.25120 * 5 4 3 10 10 C 1.38632 * 119.77403 * 0.02562 * 9 5 4 11 11 N 1.39949 * 119.99894 * 180.02562 * 10 9 5 12 12 C 1.34781 * 119.99679 * 331.69071 * 11 10 9 13 13 O 1.21283 * 120.00265 * 4.42176 * 12 11 10 14 14 C 1.50701 * 119.99572 * 184.42835 * 12 11 10 15 15 N 1.46499 * 109.46981 * 179.97438 * 14 12 11 16 16 C 1.36940 * 119.99534 * 269.99618 * 15 14 12 17 17 H 1.08005 * 119.99495 * 190.25860 * 16 15 14 18 18 C 1.38800 * 120.00346 * 10.25839 * 16 15 14 19 19 N 1.31629 * 120.00162 * 22.87940 * 18 16 15 20 20 Si 1.86803 * 120.00393 * 202.87970 * 18 16 15 21 21 H 1.48502 * 109.46772 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47090 * 119.99920 * 20 18 16 23 23 H 1.48498 * 109.47201 * 240.00049 * 20 18 16 24 24 C 1.46500 * 120.00415 * 89.99718 * 15 14 12 25 25 C 1.52992 * 117.50080 * 194.47667 * 24 15 14 26 26 C 1.53002 * 60.00299 * 252.50793 * 25 24 15 27 27 H 1.09000 * 109.47168 * 270.27287 * 1 2 3 28 28 H 1.09008 * 109.47164 * 30.27689 * 1 2 3 29 29 H 1.08994 * 109.47058 * 150.27343 * 1 2 3 30 30 H 1.08004 * 119.88553 * 359.97438 * 3 2 1 31 31 H 1.08002 * 120.00172 * 179.77094 * 4 3 2 32 32 H 0.96704 * 117.00047 * 180.02562 * 8 6 5 33 33 H 1.07996 * 120.11392 * 179.97438 * 9 5 4 34 34 H 0.96996 * 120.00114 * 151.68179 * 11 10 9 35 35 H 1.09004 * 109.47253 * 299.99418 * 14 12 11 36 36 H 1.08993 * 109.47566 * 59.99054 * 14 12 11 37 37 H 0.96998 * 120.00061 * 184.98350 * 19 18 16 38 38 H 1.09002 * 115.54505 * 340.18453 * 24 15 14 39 39 H 1.09003 * 117.50120 * 359.97438 * 25 24 15 40 40 H 1.09002 * 117.50468 * 145.02161 * 25 24 15 41 41 H 1.08999 * 117.50238 * 252.51355 * 26 25 24 42 42 H 1.08997 * 117.52025 * 107.47753 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1988 0.0000 4 6 3.5755 1.2071 -0.0049 5 6 4.2809 0.0017 0.0009 6 6 5.7583 0.0075 0.0010 7 8 6.3697 -1.0421 0.0064 8 8 6.4274 1.1767 -0.0051 9 6 3.5856 -1.2077 0.0062 10 6 2.1993 -1.2048 0.0053 11 7 1.4970 -2.4153 0.0112 12 6 2.0482 -3.5167 -0.5362 13 8 3.1833 -3.4794 -0.9617 14 6 1.2538 -4.7947 -0.6197 15 7 2.0686 -5.8358 -1.2508 16 6 2.0393 -5.9980 -2.6103 17 1 2.5044 -6.8622 -3.0611 18 6 1.4120 -5.0517 -3.4088 19 7 1.2476 -3.8226 -2.9672 20 14 0.8008 -5.5223 -5.1101 21 1 1.1057 -6.9527 -5.3674 22 1 -0.6665 -5.3070 -5.1861 23 1 1.4781 -4.6813 -6.1295 24 6 2.9148 -6.7034 -0.4277 25 6 3.9849 -7.5308 -1.1425 26 6 2.7370 -8.2153 -0.5811 27 1 -0.3633 0.0049 1.0276 28 1 -0.3634 0.8875 -0.5182 29 1 -0.3633 -0.8924 -0.5096 30 1 1.6521 2.1320 -0.0004 31 1 4.1099 2.1457 -0.0086 32 1 7.3933 1.1298 -0.0052 33 1 4.1254 -2.1431 0.0103 34 1 0.6137 -2.4616 0.4093 35 1 0.9708 -5.1128 0.3838 36 1 0.3559 -4.6263 -1.2141 37 1 0.7461 -3.1810 -3.4941 38 1 3.1526 -6.3228 0.5656 39 1 4.0591 -7.4300 -2.2254 40 1 4.9271 -7.6948 -0.6196 41 1 2.8582 -8.8294 0.3112 42 1 1.9902 -8.5644 -1.2941 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600355597.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:19 Heat of formation + Delta-G solvation = -56.917088 kcal Electronic energy + Delta-G solvation = -27054.039695 eV Core-core repulsion = 23193.392859 eV Total energy + Delta-G solvation = -3860.646836 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.67518 -40.85427 -39.41282 -38.35284 -37.13018 -35.57985 -35.25922 -33.55671 -32.48430 -30.91894 -28.82604 -28.18727 -25.79605 -24.53642 -23.63012 -23.01044 -21.88768 -21.71704 -21.20210 -19.28511 -18.84650 -18.28279 -17.67260 -17.53137 -16.87666 -16.71380 -16.23542 -16.06469 -15.94348 -15.68497 -15.23344 -14.75997 -14.55083 -14.48748 -14.29890 -14.16490 -13.59550 -13.22408 -13.20243 -12.97232 -12.71699 -12.65729 -12.60213 -12.43153 -12.34059 -12.25884 -12.10454 -11.90357 -11.73879 -11.72503 -11.20350 -11.04085 -10.41897 -10.21685 -9.76566 -8.89145 -8.76265 -7.90303 -5.19656 -0.30872 0.45762 1.42810 1.47294 1.48659 1.56005 1.98807 2.25328 2.43469 2.61191 2.93052 3.11720 3.41392 3.47987 3.88914 3.94564 4.14786 4.23093 4.23516 4.31467 4.40722 4.46470 4.49196 4.67262 4.80812 4.88057 4.88858 4.90528 4.95459 5.02614 5.20141 5.25202 5.29584 5.33775 5.35942 5.48035 5.50133 5.56049 5.66311 5.70152 6.13608 6.23148 6.83554 6.94046 7.10968 7.74412 7.91351 8.20171 9.15016 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012289 B = 0.004471 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.848811 B = 6261.451868 C = 7054.969785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.085 4.085 3 C -0.108 4.108 4 C -0.080 4.080 5 C -0.142 4.142 6 C 0.530 3.470 7 O -0.557 6.557 8 O -0.496 6.496 9 C -0.101 4.101 10 C 0.142 3.858 11 N -0.671 5.671 12 C 0.525 3.475 13 O -0.553 6.553 14 C 0.167 3.833 15 N -0.556 5.556 16 C -0.249 4.249 17 H 0.072 0.928 18 C -0.046 4.046 19 N -0.912 5.912 20 Si 0.960 3.040 21 H -0.275 1.275 22 H -0.280 1.280 23 H -0.309 1.309 24 C 0.102 3.898 25 C -0.209 4.209 26 C -0.186 4.186 27 H 0.099 0.901 28 H 0.092 0.908 29 H 0.059 0.941 30 H 0.174 0.826 31 H 0.162 0.838 32 H 0.431 0.569 33 H 0.117 0.883 34 H 0.417 0.583 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.246 0.754 38 H 0.103 0.897 39 H 0.068 0.932 40 H 0.097 0.903 41 H 0.112 0.888 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.148 11.097 10.847 15.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.088 4.088 3 C -0.126 4.126 4 C -0.099 4.099 5 C -0.144 4.144 6 C 0.377 3.623 7 O -0.450 6.450 8 O -0.309 6.309 9 C -0.122 4.122 10 C 0.045 3.955 11 N -0.317 5.317 12 C 0.314 3.686 13 O -0.428 6.428 14 C 0.037 3.963 15 N -0.271 5.271 16 C -0.379 4.379 17 H 0.090 0.910 18 C -0.241 4.241 19 N -0.559 5.559 20 Si 0.789 3.211 21 H -0.200 1.200 22 H -0.207 1.207 23 H -0.237 1.237 24 C -0.006 4.006 25 C -0.248 4.248 26 C -0.226 4.226 27 H 0.117 0.883 28 H 0.111 0.889 29 H 0.078 0.922 30 H 0.192 0.808 31 H 0.180 0.820 32 H 0.293 0.707 33 H 0.135 0.865 34 H 0.255 0.745 35 H 0.099 0.901 36 H 0.113 0.887 37 H 0.056 0.944 38 H 0.120 0.880 39 H 0.087 0.913 40 H 0.115 0.885 41 H 0.131 0.869 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.663 10.881 10.381 15.272 hybrid contribution 0.618 -0.465 -1.352 1.558 sum -2.044 10.415 9.029 13.935 Atomic orbital electron populations 1.20868 0.88164 1.04013 1.04031 1.20378 0.98259 0.91010 0.99181 1.21250 0.93335 0.98130 0.99920 1.21580 0.94880 0.96645 0.96773 1.18988 0.88905 0.95232 1.11270 1.21073 0.89281 0.80971 0.70999 1.90898 1.70835 1.35044 1.48237 1.84486 1.28416 1.32751 1.85245 1.21459 0.94202 0.98121 0.98392 1.17778 0.90392 0.87192 1.00118 1.43734 1.21194 1.07329 1.59493 1.22508 0.87133 0.86097 0.72870 1.90507 1.21548 1.84474 1.46272 1.20789 0.94094 0.84396 0.97055 1.43676 1.46944 1.33753 1.02750 1.19435 1.31578 1.03815 0.83046 0.91019 1.25296 1.03562 0.94478 1.00809 1.70045 1.43610 1.01929 1.40266 0.85329 0.77955 0.77284 0.80483 1.19982 1.20653 1.23729 1.21230 0.95887 0.88576 0.94917 1.23116 0.94066 1.07732 0.99888 1.23353 0.98978 0.97295 1.02999 0.88305 0.88935 0.92239 0.80845 0.82014 0.70701 0.86505 0.74545 0.90069 0.88690 0.94394 0.87955 0.91341 0.88492 0.86949 0.90362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.14 9.44 71.23 0.67 -1.47 16 2 C -0.09 -2.25 5.90 -19.69 -0.12 -2.37 16 3 C -0.11 -2.37 9.67 22.21 0.21 -2.15 16 4 C -0.08 -2.01 9.61 22.55 0.22 -1.79 16 5 C -0.14 -4.92 5.87 -20.11 -0.12 -5.04 16 6 C 0.53 18.13 8.27 70.33 0.58 18.71 16 7 O -0.56 -24.13 17.13 19.92 0.34 -23.79 16 8 O -0.50 -11.17 12.68 -56.19 -0.71 -11.89 16 9 C -0.10 -4.19 8.31 22.67 0.19 -4.01 16 10 C 0.14 5.11 6.39 38.11 0.24 5.35 16 11 N -0.67 -24.35 4.89 -303.60 -1.49 -25.83 16 12 C 0.53 24.24 5.71 87.66 0.50 24.74 16 13 O -0.55 -31.50 13.13 -3.04 -0.04 -31.54 16 14 C 0.17 7.30 5.48 85.63 0.47 7.77 16 15 N -0.56 -27.24 2.38 -682.35 -1.62 -28.86 16 16 C -0.25 -13.57 8.97 84.03 0.75 -12.82 16 17 H 0.07 3.96 6.19 -2.91 -0.02 3.94 16 18 C -0.05 -2.54 4.93 84.86 0.42 -2.12 16 19 N -0.91 -50.66 8.82 21.65 0.19 -50.47 16 20 Si 0.96 45.22 29.61 68.60 2.03 47.25 16 21 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 23 H -0.31 -15.28 7.11 99.48 0.71 -14.57 16 24 C 0.10 4.35 6.60 44.99 0.30 4.64 16 25 C -0.21 -8.50 9.77 30.59 0.30 -8.20 16 26 C -0.19 -6.65 10.13 30.60 0.31 -6.34 16 27 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.09 1.35 8.09 -2.38 -0.02 1.33 16 29 H 0.06 1.32 7.03 -2.39 -0.02 1.30 16 30 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 31 H 0.16 3.01 7.61 -2.91 -0.02 2.99 16 32 H 0.43 5.61 9.11 -74.05 -0.67 4.93 16 33 H 0.12 6.02 5.29 -2.91 -0.02 6.00 16 34 H 0.42 11.59 7.54 -92.71 -0.70 10.89 16 35 H 0.08 2.86 8.07 -2.39 -0.02 2.85 16 36 H 0.10 4.40 6.36 -2.39 -0.02 4.38 16 37 H 0.25 13.50 8.32 -92.71 -0.77 12.73 16 38 H 0.10 4.03 8.14 -2.39 -0.02 4.01 16 39 H 0.07 3.16 6.41 -2.39 -0.02 3.15 16 40 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 41 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 42 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -80.37 353.81 3.35 -77.02 By element: Atomic # 1 Polarization: 33.49 SS G_CDS: -0.29 Total: 33.20 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: 4.93 Total: 14.91 kcal Atomic # 7 Polarization: -102.25 SS G_CDS: -2.92 Total: -105.17 kcal Atomic # 8 Polarization: -66.81 SS G_CDS: -0.41 Total: -67.22 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -80.37 3.35 -77.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600355597.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.105 kcal (2) G-P(sol) polarization free energy of solvation -80.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds