Wall clock time and date at job start Tue Mar 31 2020 13:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31679 * 119.72667 * 2 1 4 4 C 1.31931 * 121.88811 * 180.27653 * 3 2 1 5 5 C 1.50704 * 119.45117 * 180.02562 * 4 3 2 6 6 C 1.52995 * 117.49744 * 163.62224 * 5 4 3 7 7 C 1.52987 * 60.00162 * 252.51244 * 6 5 4 8 8 C 1.38366 * 121.09487 * 0.02562 * 4 3 2 9 9 C 1.38332 * 119.31196 * 359.97438 * 8 4 3 10 10 C 1.39598 * 119.71643 * 180.27662 * 2 1 3 11 11 C 1.47718 * 120.56658 * 359.74723 * 10 2 1 12 12 O 1.21598 * 119.99946 * 318.17821 * 11 10 2 13 13 N 1.34774 * 120.00125 * 138.18335 * 11 10 2 14 14 C 1.36877 * 120.00172 * 5.28370 * 13 11 10 15 15 H 1.07995 * 119.99722 * 319.61940 * 14 13 11 16 16 C 1.39051 * 119.99909 * 139.60767 * 14 13 11 17 17 N 1.31364 * 119.99553 * 160.36008 * 16 14 13 18 18 Si 1.86802 * 120.00317 * 340.37005 * 16 14 13 19 19 H 1.48499 * 109.47231 * 95.22610 * 18 16 14 20 20 H 1.48496 * 109.47066 * 215.22349 * 18 16 14 21 21 H 1.48499 * 109.46854 * 335.22473 * 18 16 14 22 22 C 1.46507 * 120.00224 * 185.28897 * 13 11 10 23 23 C 1.52993 * 109.47333 * 89.99800 * 22 13 11 24 24 C 1.50694 * 109.47081 * 180.02562 * 23 22 13 25 25 O 1.20819 * 120.00407 * 359.97438 * 24 23 22 26 26 O 1.34237 * 119.99925 * 180.02562 * 24 23 22 27 27 H 1.09006 * 109.47257 * 267.42031 * 1 2 3 28 28 H 1.08999 * 109.47187 * 27.41269 * 1 2 3 29 29 H 1.09001 * 109.47568 * 147.42065 * 1 2 3 30 30 H 1.08998 * 115.55001 * 309.32969 * 5 4 3 31 31 H 1.09005 * 117.49935 * 0.02562 * 6 5 4 32 32 H 1.09004 * 117.49774 * 145.01859 * 6 5 4 33 33 H 1.09004 * 117.50384 * 252.51365 * 7 6 5 34 34 H 1.08999 * 117.52154 * 107.48554 * 7 6 5 35 35 H 1.07998 * 120.34557 * 180.02562 * 8 4 3 36 36 H 1.07999 * 120.86363 * 180.02562 * 9 8 4 37 37 H 0.97004 * 119.99522 * 180.02562 * 17 16 14 38 38 H 1.09003 * 109.46714 * 210.00206 * 22 13 11 39 39 H 1.08999 * 109.46795 * 329.99411 * 22 13 11 40 40 H 1.09002 * 109.46817 * 299.99980 * 23 22 13 41 41 H 1.08999 * 109.47498 * 60.00041 * 23 22 13 42 42 H 0.96696 * 116.99848 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1599 1.1435 0.0000 4 6 3.4783 1.1933 -0.0054 5 6 4.1693 2.5326 -0.0045 6 6 5.6519 2.5623 0.3720 7 6 4.6040 3.1022 1.3472 8 6 4.2371 0.0362 -0.0119 9 6 3.5998 -1.1916 -0.0122 10 6 2.1990 -1.2124 -0.0059 11 6 1.4667 -2.4953 -0.0064 12 8 0.4865 -2.6362 0.6992 13 7 1.8852 -3.5097 -0.7889 14 6 3.0484 -3.3904 -1.5004 15 1 3.2922 -2.4559 -1.9838 16 6 3.9161 -4.4723 -1.6007 17 7 4.8100 -4.5102 -2.5625 18 14 3.8106 -5.8717 -0.3678 19 1 2.9650 -6.9585 -0.9238 20 1 5.1733 -6.3951 -0.0953 21 1 3.2096 -5.3740 0.8956 22 6 1.0949 -4.7401 -0.8781 23 6 0.0840 -4.6154 -2.0196 24 6 -0.7293 -5.8808 -2.1109 25 8 -0.5213 -6.7894 -1.3423 26 8 -1.6841 -5.9989 -3.0470 27 1 -0.3634 -0.0463 1.0267 28 1 -0.3633 0.9123 -0.4731 29 1 -0.3634 -0.8659 -0.5534 30 1 3.8277 3.2383 -0.7617 31 1 6.1276 1.6131 0.6187 32 1 6.2861 3.2876 -0.1377 33 1 4.5488 4.1828 1.4793 34 1 4.3900 2.5086 2.2360 35 1 5.3156 0.0911 -0.0159 36 1 4.1673 -2.1104 -0.0167 37 1 5.4151 -5.2652 -2.6327 38 1 1.7574 -5.5842 -1.0700 39 1 0.5650 -4.9004 0.0608 40 1 -0.5784 -3.7713 -1.8276 41 1 0.6139 -4.4551 -2.9585 42 1 -2.1796 -6.8290 -3.0663 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600693367.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:37 Heat of formation + Delta-G solvation = -57.579450 kcal Electronic energy + Delta-G solvation = -26883.014184 eV Core-core repulsion = 23022.338626 eV Total energy + Delta-G solvation = -3860.675558 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.38375 -39.99293 -38.69378 -36.82963 -36.00943 -35.30717 -32.65519 -32.34978 -31.77522 -30.60746 -27.34391 -25.45291 -25.25912 -23.85187 -22.61522 -21.60382 -21.07565 -20.44967 -19.35945 -18.04079 -17.55475 -16.66740 -16.42410 -16.34650 -15.79969 -15.60512 -15.07940 -14.70647 -14.55917 -14.15773 -13.74502 -13.54721 -13.40593 -12.96223 -12.81597 -12.63503 -12.34939 -12.23934 -12.09852 -11.91139 -11.65781 -11.55047 -11.37136 -11.31826 -11.16920 -10.96378 -10.55839 -10.42871 -10.37709 -10.28523 -10.02997 -9.43476 -9.24797 -9.14015 -8.69149 -8.27105 -8.02508 -6.66521 -4.31359 1.29822 1.80324 2.44665 2.99716 3.12754 3.16542 3.22507 3.50702 3.78071 3.98305 4.18306 4.23542 4.42459 4.75032 4.86461 4.96478 5.10215 5.25652 5.26312 5.39776 5.41483 5.52059 5.60223 5.64889 5.72392 5.79963 5.96751 5.97868 6.06459 6.08156 6.10096 6.13489 6.17759 6.22559 6.41501 6.48764 6.66836 6.69596 6.83225 7.10267 7.16330 7.83759 8.03527 8.09409 8.40113 8.71184 9.08679 9.40629 10.41564 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015145 B = 0.004345 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.293210 B = 6442.776595 C = 7671.141204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.165 3.835 3 N -0.493 5.493 4 C 0.162 3.838 5 C -0.101 4.101 6 C -0.174 4.174 7 C -0.165 4.165 8 C -0.192 4.192 9 C -0.009 4.009 10 C -0.152 4.152 11 C 0.529 3.471 12 O -0.581 6.581 13 N -0.455 5.455 14 C -0.358 4.358 15 H 0.110 0.890 16 C 0.073 3.927 17 N -0.849 5.849 18 Si 0.865 3.135 19 H -0.267 1.267 20 H -0.284 1.284 21 H -0.258 1.258 22 C 0.113 3.887 23 C -0.123 4.123 24 C 0.485 3.515 25 O -0.519 6.519 26 O -0.519 6.519 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.118 0.882 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.133 0.867 36 H 0.160 0.840 37 H 0.278 0.722 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.106 0.894 41 H 0.116 0.884 42 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.220 6.876 1.243 7.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.027 3.973 3 N -0.202 5.202 4 C 0.025 3.975 5 C -0.120 4.120 6 C -0.212 4.212 7 C -0.202 4.202 8 C -0.212 4.212 9 C -0.035 4.035 10 C -0.157 4.157 11 C 0.319 3.681 12 O -0.466 6.466 13 N -0.174 5.174 14 C -0.484 4.484 15 H 0.127 0.873 16 C -0.136 4.136 17 N -0.482 5.482 18 Si 0.691 3.309 19 H -0.193 1.193 20 H -0.211 1.211 21 H -0.182 1.182 22 C -0.010 4.010 23 C -0.162 4.162 24 C 0.327 3.673 25 O -0.408 6.408 26 O -0.331 6.331 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.136 0.864 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.151 0.849 36 H 0.177 0.823 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.124 0.876 41 H 0.134 0.866 42 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -2.723 7.567 1.693 8.218 hybrid contribution 0.429 -2.267 0.234 2.319 sum -2.295 5.300 1.927 6.088 Atomic orbital electron populations 1.20651 0.88538 1.02486 1.03327 1.21230 0.96764 0.86746 0.92603 1.67148 1.09104 1.28903 1.15091 1.20286 0.89226 0.93261 0.94777 1.20720 0.95974 0.95198 1.00115 1.23086 0.91249 1.03419 1.03416 1.22934 1.03019 1.00849 0.93414 1.21849 1.01212 0.92581 1.05564 1.22244 0.93624 0.99013 0.88580 1.20680 0.94733 0.94536 1.05749 1.18064 0.85094 0.84582 0.80387 1.90666 1.29560 1.83378 1.42949 1.43534 1.20998 1.12998 1.39889 1.19120 0.95749 1.02472 1.31087 0.87292 1.25338 0.95068 0.97768 0.95456 1.69716 1.19628 1.31447 1.27433 0.87084 0.77691 0.82644 0.83470 1.19314 1.21059 1.18173 1.21434 0.93225 0.88860 0.97482 1.21746 0.97548 0.92912 1.03985 1.23666 0.77503 0.89648 0.76458 1.90703 1.66752 1.41786 1.41512 1.84578 1.48241 1.45224 1.55051 0.90209 0.91485 0.90464 0.86398 0.88099 0.88260 0.88464 0.88775 0.84921 0.82261 0.91112 0.90477 0.89836 0.87559 0.86572 0.73794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.56 9.00 36.01 0.32 -1.24 16 2 C 0.17 3.16 6.82 -82.15 -0.56 2.60 16 3 N -0.49 -8.99 10.17 -5.40 -0.05 -9.05 16 4 C 0.16 2.68 6.46 -82.50 -0.53 2.15 16 5 C -0.10 -1.30 6.21 -91.77 -0.57 -1.88 16 6 C -0.17 -1.81 9.79 -26.74 -0.26 -2.07 16 7 C -0.16 -1.78 10.23 -26.74 -0.27 -2.06 16 8 C -0.19 -3.22 9.34 -39.50 -0.37 -3.59 16 9 C -0.01 -0.17 7.92 -38.85 -0.31 -0.48 16 10 C -0.15 -3.13 5.29 -104.82 -0.55 -3.68 16 11 C 0.53 11.77 6.58 -12.39 -0.08 11.69 16 12 O -0.58 -13.58 14.79 5.28 0.08 -13.50 16 13 N -0.45 -10.19 2.13 -115.93 -0.25 -10.44 16 14 C -0.36 -8.47 6.93 -15.00 -0.10 -8.57 16 15 H 0.11 2.75 6.69 -52.49 -0.35 2.39 16 16 C 0.07 1.78 5.33 -17.45 -0.09 1.69 16 17 N -0.85 -21.64 13.95 55.50 0.77 -20.87 16 18 Si 0.86 19.62 25.00 -169.99 -4.25 15.37 16 19 H -0.27 -6.10 6.71 56.52 0.38 -5.72 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.26 -6.00 7.11 56.52 0.40 -5.60 16 22 C 0.11 2.41 3.52 -4.04 -0.01 2.39 16 23 C -0.12 -2.18 6.13 -27.89 -0.17 -2.36 16 24 C 0.48 8.11 8.33 36.00 0.30 8.41 16 25 O -0.52 -10.18 16.74 -18.74 -0.31 -10.50 16 26 O -0.52 -6.72 13.42 -39.28 -0.53 -7.25 16 27 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.08 1.35 6.70 -51.93 -0.35 1.00 16 30 H 0.12 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.10 1.05 6.38 -51.93 -0.33 0.72 16 32 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.13 1.88 6.23 -52.49 -0.33 1.55 16 36 H 0.16 3.24 6.36 -52.49 -0.33 2.91 16 37 H 0.28 6.70 8.31 -40.82 -0.34 6.36 16 38 H 0.08 1.73 3.40 -51.93 -0.18 1.56 16 39 H 0.08 1.83 7.31 -51.93 -0.38 1.45 16 40 H 0.11 1.77 8.14 -51.93 -0.42 1.35 16 41 H 0.12 2.03 8.14 -51.93 -0.42 1.61 16 42 H 0.40 3.29 9.10 45.56 0.41 3.71 16 LS Contribution 350.63 15.07 5.28 5.28 Total: -1.00 -29.73 350.63 -6.90 -36.62 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -4.37 Total: 11.32 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -3.27 Total: 3.01 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: 0.47 Total: -40.35 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -0.76 Total: -31.25 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -4.25 Total: 15.37 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.73 -6.90 -36.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600693367.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.955 kcal (2) G-P(sol) polarization free energy of solvation -29.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds