Wall clock time and date at job start Tue Mar 31 2020 13:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31679 * 119.72667 * 2 1 4 4 C 1.31931 * 121.88811 * 180.27653 * 3 2 1 5 5 C 1.50704 * 119.45117 * 180.02562 * 4 3 2 6 6 C 1.52995 * 117.49744 * 163.62224 * 5 4 3 7 7 C 1.52987 * 60.00162 * 252.51244 * 6 5 4 8 8 C 1.38366 * 121.09487 * 0.02562 * 4 3 2 9 9 C 1.38332 * 119.31196 * 359.97438 * 8 4 3 10 10 C 1.39598 * 119.71643 * 180.27662 * 2 1 3 11 11 C 1.47718 * 120.56658 * 359.74723 * 10 2 1 12 12 O 1.21598 * 119.99946 * 318.17821 * 11 10 2 13 13 N 1.34774 * 120.00125 * 138.18335 * 11 10 2 14 14 C 1.36877 * 120.00172 * 5.28370 * 13 11 10 15 15 H 1.07995 * 119.99722 * 319.61940 * 14 13 11 16 16 C 1.39051 * 119.99909 * 139.60767 * 14 13 11 17 17 N 1.31364 * 119.99553 * 160.36008 * 16 14 13 18 18 Si 1.86802 * 120.00317 * 340.37005 * 16 14 13 19 19 H 1.48499 * 109.47231 * 95.22610 * 18 16 14 20 20 H 1.48496 * 109.47066 * 215.22349 * 18 16 14 21 21 H 1.48499 * 109.46854 * 335.22473 * 18 16 14 22 22 C 1.46507 * 120.00224 * 185.28897 * 13 11 10 23 23 C 1.52993 * 109.47333 * 89.99800 * 22 13 11 24 24 C 1.50694 * 109.47081 * 180.02562 * 23 22 13 25 25 O 1.20819 * 120.00407 * 359.97438 * 24 23 22 26 26 O 1.34237 * 119.99925 * 180.02562 * 24 23 22 27 27 H 1.09006 * 109.47257 * 267.42031 * 1 2 3 28 28 H 1.08999 * 109.47187 * 27.41269 * 1 2 3 29 29 H 1.09001 * 109.47568 * 147.42065 * 1 2 3 30 30 H 1.08998 * 115.55001 * 309.32969 * 5 4 3 31 31 H 1.09005 * 117.49935 * 0.02562 * 6 5 4 32 32 H 1.09004 * 117.49774 * 145.01859 * 6 5 4 33 33 H 1.09004 * 117.50384 * 252.51365 * 7 6 5 34 34 H 1.08999 * 117.52154 * 107.48554 * 7 6 5 35 35 H 1.07998 * 120.34557 * 180.02562 * 8 4 3 36 36 H 1.07999 * 120.86363 * 180.02562 * 9 8 4 37 37 H 0.97004 * 119.99522 * 180.02562 * 17 16 14 38 38 H 1.09003 * 109.46714 * 210.00206 * 22 13 11 39 39 H 1.08999 * 109.46795 * 329.99411 * 22 13 11 40 40 H 1.09002 * 109.46817 * 299.99980 * 23 22 13 41 41 H 1.08999 * 109.47498 * 60.00041 * 23 22 13 42 42 H 0.96696 * 116.99848 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1599 1.1435 0.0000 4 6 3.4783 1.1933 -0.0054 5 6 4.1693 2.5326 -0.0045 6 6 5.6519 2.5623 0.3720 7 6 4.6040 3.1022 1.3472 8 6 4.2371 0.0362 -0.0119 9 6 3.5998 -1.1916 -0.0122 10 6 2.1990 -1.2124 -0.0059 11 6 1.4667 -2.4953 -0.0064 12 8 0.4865 -2.6362 0.6992 13 7 1.8852 -3.5097 -0.7889 14 6 3.0484 -3.3904 -1.5004 15 1 3.2922 -2.4559 -1.9838 16 6 3.9161 -4.4723 -1.6007 17 7 4.8100 -4.5102 -2.5625 18 14 3.8106 -5.8717 -0.3678 19 1 2.9650 -6.9585 -0.9238 20 1 5.1733 -6.3951 -0.0953 21 1 3.2096 -5.3740 0.8956 22 6 1.0949 -4.7401 -0.8781 23 6 0.0840 -4.6154 -2.0196 24 6 -0.7293 -5.8808 -2.1109 25 8 -0.5213 -6.7894 -1.3423 26 8 -1.6841 -5.9989 -3.0470 27 1 -0.3634 -0.0463 1.0267 28 1 -0.3633 0.9123 -0.4731 29 1 -0.3634 -0.8659 -0.5534 30 1 3.8277 3.2383 -0.7617 31 1 6.1276 1.6131 0.6187 32 1 6.2861 3.2876 -0.1377 33 1 4.5488 4.1828 1.4793 34 1 4.3900 2.5086 2.2360 35 1 5.3156 0.0911 -0.0159 36 1 4.1673 -2.1104 -0.0167 37 1 5.4151 -5.2652 -2.6327 38 1 1.7574 -5.5842 -1.0700 39 1 0.5650 -4.9004 0.0608 40 1 -0.5784 -3.7713 -1.8276 41 1 0.6139 -4.4551 -2.9585 42 1 -2.1796 -6.8290 -3.0663 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600693367.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:36 Heat of formation + Delta-G solvation = -75.920707 kcal Electronic energy + Delta-G solvation = -26883.809520 eV Core-core repulsion = 23022.338626 eV Total energy + Delta-G solvation = -3861.470894 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.88092 -41.32636 -40.25103 -37.91066 -37.33042 -36.98622 -34.33739 -33.94167 -33.22947 -32.14351 -28.73788 -27.14418 -26.82260 -25.29457 -23.66114 -22.79778 -22.38983 -21.80108 -20.99147 -19.55628 -19.03484 -18.18021 -18.06003 -17.61068 -17.14286 -16.98168 -16.67221 -16.26423 -15.86115 -15.69235 -15.16370 -14.98618 -14.89441 -14.60482 -14.26946 -14.22295 -13.89925 -13.68087 -13.53988 -13.34540 -13.03241 -12.94036 -12.80145 -12.62115 -12.61128 -12.25018 -12.15093 -11.86072 -11.72826 -11.50700 -11.32773 -11.22306 -10.85471 -10.61382 -10.29850 -9.87270 -9.63650 -8.57800 -6.21821 -0.14865 0.34325 1.11050 1.16145 1.28506 1.36884 1.71813 1.96538 2.11134 2.56447 2.68280 2.88554 2.95303 3.25100 3.74202 3.76252 3.81080 3.92247 3.97644 4.05573 4.08458 4.22518 4.28892 4.32822 4.52317 4.57535 4.61434 4.71386 4.75166 4.79110 4.81487 4.84066 4.98863 5.13040 5.18274 5.26885 5.30798 5.31250 5.39598 5.52343 5.73612 5.98336 6.14028 6.84360 6.93390 6.98787 7.25582 7.60096 8.54022 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015145 B = 0.004345 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.293210 B = 6442.776595 C = 7671.141204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.159 3.841 3 N -0.501 5.501 4 C 0.168 3.832 5 C -0.126 4.126 6 C -0.158 4.158 7 C -0.156 4.156 8 C -0.190 4.190 9 C -0.019 4.019 10 C -0.183 4.183 11 C 0.530 3.470 12 O -0.596 6.596 13 N -0.463 5.463 14 C -0.340 4.340 15 H 0.092 0.908 16 C 0.050 3.950 17 N -0.879 5.879 18 Si 0.904 3.096 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.271 1.271 22 C 0.111 3.889 23 C -0.118 4.118 24 C 0.497 3.503 25 O -0.552 6.552 26 O -0.504 6.504 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.127 0.873 31 H 0.100 0.900 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.084 0.916 35 H 0.160 0.840 36 H 0.143 0.857 37 H 0.282 0.718 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.070 8.476 1.093 8.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.021 3.979 3 N -0.211 5.211 4 C 0.030 3.970 5 C -0.144 4.144 6 C -0.195 4.195 7 C -0.193 4.193 8 C -0.210 4.210 9 C -0.045 4.045 10 C -0.188 4.188 11 C 0.321 3.679 12 O -0.482 6.482 13 N -0.182 5.182 14 C -0.468 4.468 15 H 0.110 0.890 16 C -0.156 4.156 17 N -0.514 5.514 18 Si 0.731 3.269 19 H -0.196 1.196 20 H -0.204 1.204 21 H -0.196 1.196 22 C -0.012 4.012 23 C -0.157 4.157 24 C 0.340 3.660 25 O -0.443 6.443 26 O -0.318 6.318 27 H 0.100 0.900 28 H 0.106 0.894 29 H 0.085 0.915 30 H 0.145 0.855 31 H 0.118 0.882 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.102 0.898 35 H 0.177 0.823 36 H 0.161 0.839 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.136 0.864 41 H 0.138 0.862 42 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -2.596 9.154 1.524 9.636 hybrid contribution 0.340 -2.648 0.293 2.685 sum -2.256 6.506 1.818 7.122 Atomic orbital electron populations 1.20634 0.87301 1.03043 1.03496 1.21529 0.97798 0.86535 0.92036 1.67282 1.10060 1.28185 1.15584 1.20942 0.88821 0.95014 0.92221 1.20827 0.97876 0.93623 1.02123 1.23225 0.90018 1.03969 1.02320 1.23026 1.02290 1.02043 0.91947 1.22112 1.02597 0.91638 1.04616 1.22165 0.93279 0.99606 0.89422 1.20676 0.95311 0.94267 1.08564 1.18360 0.84808 0.85047 0.79705 1.90636 1.30260 1.83819 1.43460 1.43588 1.21019 1.13516 1.40117 1.18884 0.96146 1.01628 1.30098 0.88999 1.25601 0.95042 0.98902 0.96099 1.69741 1.20716 1.32387 1.28592 0.86486 0.77566 0.81223 0.81675 1.19607 1.20371 1.19617 1.21378 0.93524 0.87863 0.98397 1.21567 0.97293 0.94221 1.02590 1.23256 0.77695 0.88574 0.76429 1.90702 1.67940 1.42679 1.42986 1.84500 1.47193 1.46929 1.53142 0.89990 0.89390 0.91493 0.85482 0.88158 0.85778 0.86166 0.89755 0.82294 0.83889 0.90738 0.91805 0.90935 0.86421 0.86212 0.70906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.91 9.00 71.24 0.64 -2.27 16 2 C 0.16 6.06 6.82 42.91 0.29 6.36 16 3 N -0.50 -17.79 10.17 -170.99 -1.74 -19.53 16 4 C 0.17 5.30 6.46 42.58 0.28 5.58 16 5 C -0.13 -2.91 6.21 -11.54 -0.07 -2.98 16 6 C -0.16 -2.73 9.79 30.59 0.30 -2.43 16 7 C -0.16 -2.89 10.23 30.59 0.31 -2.57 16 8 C -0.19 -6.20 9.34 22.32 0.21 -5.99 16 9 C -0.02 -0.74 7.92 22.74 0.18 -0.56 16 10 C -0.18 -7.66 5.29 -19.99 -0.11 -7.76 16 11 C 0.53 24.09 6.58 86.75 0.57 24.66 16 12 O -0.60 -28.34 14.79 -4.03 -0.06 -28.40 16 13 N -0.46 -21.16 2.13 -638.94 -1.36 -22.51 16 14 C -0.34 -16.45 6.93 84.10 0.58 -15.87 16 15 H 0.09 4.76 6.69 -2.91 -0.02 4.74 16 16 C 0.05 2.48 5.33 84.96 0.45 2.93 16 17 N -0.88 -45.24 13.95 21.68 0.30 -44.94 16 18 Si 0.90 41.08 25.00 68.60 1.71 42.79 16 19 H -0.27 -12.30 6.71 99.48 0.67 -11.63 16 20 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 21 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 22 C 0.11 4.80 3.52 86.38 0.30 5.11 16 23 C -0.12 -4.15 6.13 29.84 0.18 -3.97 16 24 C 0.50 16.10 8.33 71.23 0.59 16.69 16 25 O -0.55 -21.40 16.74 21.98 0.37 -21.03 16 26 O -0.50 -11.88 13.42 -51.48 -0.69 -12.57 16 27 H 0.08 2.66 8.14 -2.38 -0.02 2.64 16 28 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.07 2.34 6.70 -2.39 -0.02 2.33 16 30 H 0.13 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.10 1.76 6.38 -2.38 -0.02 1.74 16 32 H 0.12 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.12 1.69 8.14 -2.38 -0.02 1.68 16 34 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.16 4.22 6.23 -2.91 -0.02 4.20 16 36 H 0.14 6.01 6.36 -2.91 -0.02 6.00 16 37 H 0.28 13.67 8.31 -92.71 -0.77 12.90 16 38 H 0.06 2.91 3.40 -2.39 -0.01 2.91 16 39 H 0.07 3.25 7.31 -2.39 -0.02 3.23 16 40 H 0.12 3.85 8.14 -2.39 -0.02 3.83 16 41 H 0.12 4.13 8.14 -2.39 -0.02 4.11 16 42 H 0.43 5.80 9.10 -74.06 -0.67 5.13 16 Total: -1.00 -64.21 350.63 3.63 -60.58 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: 0.37 Total: 28.67 kcal Atomic # 6 Polarization: 12.21 SS G_CDS: 4.72 Total: 16.93 kcal Atomic # 7 Polarization: -84.18 SS G_CDS: -2.79 Total: -86.98 kcal Atomic # 8 Polarization: -61.62 SS G_CDS: -0.38 Total: -62.00 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 1.71 Total: 42.79 kcal Total: -64.21 3.63 -60.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600693367.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.337 kcal (2) G-P(sol) polarization free energy of solvation -64.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds