Wall clock time and date at job start Tue Mar 31 2020 11:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00337 * 2 1 4 4 H 1.48495 * 109.47390 * 270.00729 * 3 2 1 5 5 H 1.48506 * 109.46815 * 30.00789 * 3 2 1 6 6 H 1.48495 * 109.46925 * 150.00443 * 3 2 1 7 7 C 1.37879 * 119.99637 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00173 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99781 * 179.97438 * 7 2 1 10 10 H 1.09001 * 109.50009 * 59.93794 * 9 7 2 11 11 C 1.53041 * 109.49636 * 180.02562 * 9 7 2 12 12 C 1.53048 * 109.53884 * 181.31892 * 11 9 7 13 13 C 1.53192 * 109.31043 * 298.63557 * 12 11 9 14 14 N 1.46927 * 108.77734 * 54.63396 * 13 12 11 15 15 C 1.34776 * 120.63116 * 126.36965 * 14 13 12 16 16 O 1.21574 * 120.00045 * 175.37650 * 15 14 13 17 17 N 1.34778 * 119.99654 * 355.10393 * 15 14 13 18 18 C 1.39398 * 119.99840 * 188.06247 * 17 15 14 19 19 C 1.39158 * 119.92205 * 32.69870 * 18 17 15 20 20 C 1.37635 * 120.08138 * 179.72654 * 19 18 17 21 21 C 1.39819 * 119.91878 * 0.57236 * 20 19 18 22 22 C 1.47446 * 120.08352 * 179.68164 * 21 20 19 23 23 O 1.21505 * 120.00667 * 180.02562 * 22 21 20 24 24 O 1.34756 * 119.99499 * 0.02562 * 22 21 20 25 25 C 1.39817 * 119.83993 * 359.70043 * 21 20 19 26 26 C 1.37633 * 119.92204 * 0.02562 * 25 21 20 27 27 C 1.46923 * 118.73476 * 306.64148 * 14 13 12 28 28 H 0.97001 * 119.99740 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.46249 * 61.30059 * 11 9 7 30 30 H 1.09001 * 109.46115 * 301.33510 * 11 9 7 31 31 H 1.08995 * 109.49625 * 178.68254 * 12 11 9 32 32 H 1.08995 * 109.49538 * 58.58369 * 12 11 9 33 33 H 1.09004 * 109.58532 * 294.84641 * 13 12 11 34 34 H 1.09000 * 109.70511 * 174.49589 * 13 12 11 35 35 H 0.96998 * 120.00125 * 8.05494 * 17 15 14 36 36 H 1.08000 * 119.95946 * 0.02562 * 19 18 17 37 37 H 1.07998 * 120.04423 * 180.27506 * 20 19 18 38 38 H 0.96705 * 116.99524 * 180.02562 * 24 22 21 39 39 H 1.07999 * 120.04009 * 179.97438 * 25 21 20 40 40 H 1.08005 * 119.95857 * 179.97438 * 26 25 21 41 41 H 1.09004 * 109.58073 * 173.14580 * 27 14 13 42 42 H 1.08998 * 109.59261 * 293.56372 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1941 -0.0011 10 1 3.8756 -0.6796 0.8881 11 6 4.0222 -2.6368 -0.0023 12 6 5.5523 -2.6381 0.0303 13 6 6.0863 -1.9352 -1.2217 14 7 5.4856 -0.5969 -1.3051 15 6 6.2622 0.4980 -1.4263 16 8 5.7522 1.5910 -1.5788 17 7 7.6038 0.3818 -1.3728 18 6 8.4012 1.5244 -1.3288 19 6 7.9402 2.6681 -0.6839 20 6 8.7270 3.7962 -0.6335 21 6 9.9860 3.7961 -1.2418 22 6 10.8290 5.0049 -1.1961 23 8 11.9227 5.0034 -1.7256 24 8 10.3865 6.1115 -0.5672 25 6 10.4435 2.6470 -1.8937 26 6 9.6536 1.5206 -1.9352 27 6 4.0226 -0.4745 -1.2478 28 1 -0.4850 0.8401 0.0004 29 1 3.6778 -3.1433 -0.9039 30 1 3.6399 -3.1581 0.8753 31 1 5.9148 -3.6658 0.0531 32 1 5.8976 -2.1102 0.9192 33 1 5.8182 -2.5119 -2.1069 34 1 7.1708 -1.8457 -1.1586 35 1 8.0146 -0.4969 -1.3648 36 1 6.9658 2.6689 -0.2181 37 1 8.3705 4.6821 -0.1291 38 1 10.9744 6.8793 -0.5640 39 1 11.4153 2.6434 -2.3650 40 1 10.0063 0.6328 -2.4390 41 1 3.7458 0.5787 -1.1994 42 1 3.5828 -0.9295 -2.1353 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601064222.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:39 Heat of formation + Delta-G solvation = -80.602521 kcal Electronic energy + Delta-G solvation = -26461.292026 eV Core-core repulsion = 22599.618112 eV Total energy + Delta-G solvation = -3861.673913 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.00184 -40.35160 -38.82446 -37.22932 -36.28912 -34.96826 -33.47133 -32.11997 -31.27748 -30.73462 -29.92753 -25.55921 -25.34420 -23.96006 -23.10789 -22.19418 -21.56576 -20.21557 -19.23661 -18.52786 -18.28090 -17.63984 -17.22143 -16.72702 -15.82689 -15.68150 -15.42880 -14.77229 -14.63549 -14.34299 -14.12156 -13.99116 -13.69408 -13.64051 -13.38054 -13.02541 -12.95335 -12.64565 -12.57892 -12.31625 -11.81616 -11.48830 -11.46498 -11.15714 -10.87851 -10.73182 -10.58292 -10.47763 -10.20411 -9.99648 -9.82366 -9.35315 -9.22053 -9.18871 -8.67893 -8.46489 -8.11516 -6.16200 -4.18417 0.46834 1.18822 2.28144 2.58370 2.83111 3.17842 3.33545 3.41207 3.50174 3.66675 3.80032 4.36458 4.58034 4.71694 4.87575 4.87713 5.06083 5.14869 5.15375 5.20707 5.30930 5.31955 5.63815 5.76305 5.84853 5.95100 5.95885 5.99291 6.08688 6.11110 6.22054 6.28450 6.30209 6.42310 6.48103 6.60410 6.68805 6.76606 6.94732 7.09962 7.34629 7.64706 7.66957 7.89438 8.40668 8.56787 8.86883 9.44748 10.95718 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018440 B = 0.003398 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.077724 B = 8238.981231 C = 9482.503078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.073 3.927 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.295 1.295 6 H -0.265 1.265 7 C -0.517 4.517 8 H 0.078 0.922 9 C 0.004 3.996 10 H 0.030 0.970 11 C -0.101 4.101 12 C -0.136 4.136 13 C 0.112 3.888 14 N -0.615 5.615 15 C 0.698 3.302 16 O -0.568 6.568 17 N -0.691 5.691 18 C 0.222 3.778 19 C -0.141 4.141 20 C -0.034 4.034 21 C -0.164 4.164 22 C 0.533 3.467 23 O -0.523 6.523 24 O -0.512 6.512 25 C -0.028 4.028 26 C -0.170 4.170 27 C 0.117 3.883 28 H 0.266 0.734 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.408 0.592 36 H 0.146 0.854 37 H 0.140 0.860 38 H 0.412 0.588 39 H 0.140 0.860 40 H 0.135 0.865 41 H 0.081 0.919 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.395 1.570 -1.867 21.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.130 4.130 3 Si 0.709 3.291 4 H -0.198 1.198 5 H -0.222 1.222 6 H -0.190 1.190 7 C -0.556 4.556 8 H 0.096 0.904 9 C -0.016 4.016 10 H 0.049 0.951 11 C -0.138 4.138 12 C -0.175 4.175 13 C -0.011 4.011 14 N -0.351 5.351 15 C 0.400 3.600 16 O -0.445 6.445 17 N -0.340 5.340 18 C 0.124 3.876 19 C -0.162 4.162 20 C -0.053 4.053 21 C -0.167 4.167 22 C 0.378 3.622 23 O -0.414 6.414 24 O -0.324 6.324 25 C -0.047 4.047 26 C -0.191 4.191 27 C -0.003 4.003 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.247 0.753 36 H 0.164 0.836 37 H 0.158 0.842 38 H 0.271 0.729 39 H 0.157 0.843 40 H 0.153 0.847 41 H 0.098 0.902 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 20.747 2.043 -2.112 20.954 hybrid contribution 0.935 0.952 -0.088 1.337 sum 21.682 2.994 -2.200 21.998 Atomic orbital electron populations 1.69884 1.06286 1.27241 1.49703 1.25057 0.94777 0.99123 0.94026 0.86982 0.79578 0.83471 0.79037 1.19767 1.22210 1.18984 1.20931 0.88041 0.94682 1.51896 0.90367 1.19438 0.96929 0.92230 0.92970 0.95145 1.21439 0.91769 0.98865 1.01746 1.21992 0.98841 0.99572 0.97061 1.21657 0.96063 0.83830 0.99600 1.47787 1.08299 1.04346 1.74678 1.15950 0.80452 0.85207 0.78341 1.90950 1.72463 1.25290 1.55770 1.42973 1.05553 1.08319 1.77109 1.17859 0.90087 0.87220 0.92467 1.21275 1.01761 0.92464 1.00663 1.21329 0.91418 0.98074 0.94498 1.18933 0.96271 0.92556 1.08890 1.20841 0.84294 0.82976 0.74065 1.90875 1.22162 1.84028 1.44337 1.84595 1.52227 1.23968 1.71609 1.20944 0.99145 0.90282 0.94352 1.20765 0.94909 0.99883 1.03556 1.22557 0.73790 1.02713 1.01244 0.92417 0.92363 0.92031 0.91426 0.91907 0.91007 0.91748 0.75348 0.83620 0.84188 0.72920 0.84256 0.84701 0.90156 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.84 13.96 55.43 0.77 -26.07 16 2 C 0.07 2.07 5.45 -17.82 -0.10 1.98 16 3 Si 0.88 22.57 24.32 -169.99 -4.13 18.44 16 4 H -0.27 -7.07 6.92 56.52 0.39 -6.68 16 5 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 6 H -0.26 -6.71 6.53 56.52 0.37 -6.35 16 7 C -0.52 -13.86 9.15 -34.44 -0.31 -14.17 16 8 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 9 C 0.00 0.09 1.83 -91.88 -0.17 -0.08 16 10 H 0.03 0.72 7.20 -51.93 -0.37 0.34 16 11 C -0.10 -1.75 5.11 -26.69 -0.14 -1.88 16 12 C -0.14 -1.78 6.08 -26.61 -0.16 -1.94 16 13 C 0.11 1.37 6.43 -3.71 -0.02 1.34 16 14 N -0.62 -10.52 2.98 -178.76 -0.53 -11.05 16 15 C 0.70 12.19 7.99 -86.92 -0.69 11.50 16 16 O -0.57 -12.25 13.51 5.30 0.07 -12.18 16 17 N -0.69 -8.80 5.22 -14.22 -0.07 -8.88 16 18 C 0.22 2.81 6.28 -83.74 -0.53 2.29 16 19 C -0.14 -1.98 8.62 -39.46 -0.34 -2.32 16 20 C -0.03 -0.41 9.60 -39.21 -0.38 -0.79 16 21 C -0.16 -1.90 5.88 -104.97 -0.62 -2.51 16 22 C 0.53 6.00 8.26 34.48 0.28 6.28 16 23 O -0.52 -7.03 17.12 -19.27 -0.33 -7.36 16 24 O -0.51 -4.37 12.67 -40.65 -0.51 -4.88 16 25 C -0.03 -0.30 9.58 -39.21 -0.38 -0.67 16 26 C -0.17 -1.71 9.94 -39.46 -0.39 -2.10 16 27 C 0.12 2.50 5.08 -3.93 -0.02 2.48 16 28 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.56 5.58 -51.93 -0.29 0.27 16 35 H 0.41 3.72 6.29 -40.82 -0.26 3.46 16 36 H 0.15 2.39 6.43 -52.49 -0.34 2.06 16 37 H 0.14 1.49 7.60 -52.49 -0.40 1.09 16 38 H 0.41 1.58 9.11 45.56 0.42 1.99 16 39 H 0.14 1.28 7.64 -52.49 -0.40 0.88 16 40 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 41 H 0.08 1.95 2.34 -51.93 -0.12 1.82 16 42 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 LS Contribution 341.01 15.07 5.14 5.14 Total: -1.00 -34.94 341.01 -7.88 -42.82 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -4.32 Total: 4.62 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -3.96 Total: -0.60 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: 0.17 Total: -46.00 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.77 Total: -24.42 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.13 Total: 18.44 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.94 -7.88 -42.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064222.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.782 kcal (2) G-P(sol) polarization free energy of solvation -34.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds