Wall clock time and date at job start Tue Mar 31 2020 11:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00337 * 2 1 4 4 H 1.48495 * 109.47390 * 270.00729 * 3 2 1 5 5 H 1.48506 * 109.46815 * 30.00789 * 3 2 1 6 6 H 1.48495 * 109.46925 * 150.00443 * 3 2 1 7 7 C 1.37879 * 119.99637 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00173 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99781 * 179.97438 * 7 2 1 10 10 H 1.09001 * 109.50009 * 59.93794 * 9 7 2 11 11 C 1.53041 * 109.49636 * 180.02562 * 9 7 2 12 12 C 1.53048 * 109.53884 * 181.31892 * 11 9 7 13 13 C 1.53192 * 109.31043 * 298.63557 * 12 11 9 14 14 N 1.46927 * 108.77734 * 54.63396 * 13 12 11 15 15 C 1.34776 * 120.63116 * 126.36965 * 14 13 12 16 16 O 1.21574 * 120.00045 * 175.37650 * 15 14 13 17 17 N 1.34778 * 119.99654 * 355.10393 * 15 14 13 18 18 C 1.39398 * 119.99840 * 188.06247 * 17 15 14 19 19 C 1.39158 * 119.92205 * 32.69870 * 18 17 15 20 20 C 1.37635 * 120.08138 * 179.72654 * 19 18 17 21 21 C 1.39819 * 119.91878 * 0.57236 * 20 19 18 22 22 C 1.47446 * 120.08352 * 179.68164 * 21 20 19 23 23 O 1.21505 * 120.00667 * 180.02562 * 22 21 20 24 24 O 1.34756 * 119.99499 * 0.02562 * 22 21 20 25 25 C 1.39817 * 119.83993 * 359.70043 * 21 20 19 26 26 C 1.37633 * 119.92204 * 0.02562 * 25 21 20 27 27 C 1.46923 * 118.73476 * 306.64148 * 14 13 12 28 28 H 0.97001 * 119.99740 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.46249 * 61.30059 * 11 9 7 30 30 H 1.09001 * 109.46115 * 301.33510 * 11 9 7 31 31 H 1.08995 * 109.49625 * 178.68254 * 12 11 9 32 32 H 1.08995 * 109.49538 * 58.58369 * 12 11 9 33 33 H 1.09004 * 109.58532 * 294.84641 * 13 12 11 34 34 H 1.09000 * 109.70511 * 174.49589 * 13 12 11 35 35 H 0.96998 * 120.00125 * 8.05494 * 17 15 14 36 36 H 1.08000 * 119.95946 * 0.02562 * 19 18 17 37 37 H 1.07998 * 120.04423 * 180.27506 * 20 19 18 38 38 H 0.96705 * 116.99524 * 180.02562 * 24 22 21 39 39 H 1.07999 * 120.04009 * 179.97438 * 25 21 20 40 40 H 1.08005 * 119.95857 * 179.97438 * 26 25 21 41 41 H 1.09004 * 109.58073 * 173.14580 * 27 14 13 42 42 H 1.08998 * 109.59261 * 293.56372 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1941 -0.0011 10 1 3.8756 -0.6796 0.8881 11 6 4.0222 -2.6368 -0.0023 12 6 5.5523 -2.6381 0.0303 13 6 6.0863 -1.9352 -1.2217 14 7 5.4856 -0.5969 -1.3051 15 6 6.2622 0.4980 -1.4263 16 8 5.7522 1.5910 -1.5788 17 7 7.6038 0.3818 -1.3728 18 6 8.4012 1.5244 -1.3288 19 6 7.9402 2.6681 -0.6839 20 6 8.7270 3.7962 -0.6335 21 6 9.9860 3.7961 -1.2418 22 6 10.8290 5.0049 -1.1961 23 8 11.9227 5.0034 -1.7256 24 8 10.3865 6.1115 -0.5672 25 6 10.4435 2.6470 -1.8937 26 6 9.6536 1.5206 -1.9352 27 6 4.0226 -0.4745 -1.2478 28 1 -0.4850 0.8401 0.0004 29 1 3.6778 -3.1433 -0.9039 30 1 3.6399 -3.1581 0.8753 31 1 5.9148 -3.6658 0.0531 32 1 5.8976 -2.1102 0.9192 33 1 5.8182 -2.5119 -2.1069 34 1 7.1708 -1.8457 -1.1586 35 1 8.0146 -0.4969 -1.3648 36 1 6.9658 2.6689 -0.2181 37 1 8.3705 4.6821 -0.1291 38 1 10.9744 6.8793 -0.5640 39 1 11.4153 2.6434 -2.3650 40 1 10.0063 0.6328 -2.4390 41 1 3.7458 0.5787 -1.1994 42 1 3.5828 -0.9295 -2.1353 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601064222.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:38 Heat of formation + Delta-G solvation = -105.674358 kcal Electronic energy + Delta-G solvation = -26462.379222 eV Core-core repulsion = 22599.618112 eV Total energy + Delta-G solvation = -3862.761110 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.13781 -41.29268 -39.87977 -38.54653 -37.10256 -36.17279 -35.22868 -33.68836 -32.30707 -32.12008 -30.99278 -27.12498 -26.76143 -25.08761 -24.03066 -23.59874 -22.57199 -21.52176 -20.56862 -19.68300 -19.11934 -18.97453 -18.55944 -18.14834 -17.01593 -16.85129 -16.64291 -16.10459 -15.81306 -15.53116 -15.47167 -15.36242 -14.94756 -14.69320 -14.59236 -14.39449 -14.31925 -13.83385 -13.71700 -13.55481 -13.15727 -12.93639 -12.62734 -12.40793 -12.34163 -12.14258 -11.91592 -11.75127 -11.63083 -11.58506 -11.38070 -11.07014 -11.01591 -10.81140 -10.10674 -9.75904 -9.23331 -8.39503 -6.41492 -0.44677 0.31342 1.23333 1.26666 1.31970 1.39337 1.48285 1.95317 2.09729 2.20278 2.69882 2.73995 2.98339 3.72662 3.86287 3.91469 3.97915 4.08874 4.11819 4.18658 4.39549 4.41190 4.43783 4.51816 4.61393 4.69399 4.84178 4.91615 4.96586 5.02136 5.07421 5.16417 5.22430 5.23712 5.33160 5.36379 5.53128 5.55893 5.60903 5.68033 5.80623 5.84435 6.26132 6.67293 6.75747 6.96208 7.24271 7.29307 8.76550 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018440 B = 0.003398 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.077724 B = 8238.981231 C = 9482.503078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.028 3.972 3 Si 0.938 3.062 4 H -0.282 1.282 5 H -0.296 1.296 6 H -0.266 1.266 7 C -0.510 4.510 8 H 0.052 0.948 9 C 0.004 3.996 10 H 0.014 0.986 11 C -0.099 4.099 12 C -0.127 4.127 13 C 0.105 3.895 14 N -0.618 5.618 15 C 0.695 3.305 16 O -0.617 6.617 17 N -0.668 5.668 18 C 0.204 3.796 19 C -0.164 4.164 20 C -0.036 4.036 21 C -0.170 4.170 22 C 0.538 3.462 23 O -0.547 6.547 24 O -0.508 6.508 25 C -0.026 4.026 26 C -0.148 4.148 27 C 0.126 3.874 28 H 0.267 0.733 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.110 0.890 32 H 0.058 0.942 33 H 0.091 0.909 34 H 0.110 0.890 35 H 0.427 0.573 36 H 0.113 0.887 37 H 0.146 0.854 38 H 0.433 0.567 39 H 0.158 0.842 40 H 0.174 0.826 41 H 0.048 0.952 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.383 0.371 -2.551 25.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.171 4.171 3 Si 0.768 3.232 4 H -0.209 1.209 5 H -0.223 1.223 6 H -0.191 1.191 7 C -0.549 4.549 8 H 0.070 0.930 9 C -0.016 4.016 10 H 0.033 0.967 11 C -0.137 4.137 12 C -0.165 4.165 13 C -0.017 4.017 14 N -0.353 5.353 15 C 0.397 3.603 16 O -0.497 6.497 17 N -0.319 5.319 18 C 0.107 3.893 19 C -0.184 4.184 20 C -0.054 4.054 21 C -0.172 4.172 22 C 0.385 3.615 23 O -0.440 6.440 24 O -0.322 6.322 25 C -0.045 4.045 26 C -0.169 4.169 27 C 0.003 3.997 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.128 0.872 32 H 0.077 0.923 33 H 0.109 0.891 34 H 0.128 0.872 35 H 0.270 0.730 36 H 0.131 0.869 37 H 0.163 0.837 38 H 0.295 0.705 39 H 0.175 0.825 40 H 0.191 0.809 41 H 0.066 0.934 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 24.807 0.819 -2.776 24.975 hybrid contribution -0.254 1.326 0.142 1.358 sum 24.553 2.145 -2.634 24.787 Atomic orbital electron populations 1.69986 1.07571 1.27870 1.52354 1.25641 0.95179 1.01703 0.94564 0.86058 0.78274 0.80688 0.78186 1.20872 1.22325 1.19071 1.21318 0.90899 0.93185 1.49488 0.93018 1.19367 0.93786 0.95716 0.92742 0.96741 1.21384 0.95482 0.95094 1.01716 1.21943 0.94910 1.02277 0.97367 1.22073 0.98423 0.81169 0.99987 1.47639 1.06575 1.06421 1.74704 1.16107 0.81825 0.84382 0.77977 1.90923 1.73765 1.27252 1.57749 1.42586 1.03621 1.09486 1.76244 1.18031 0.91115 0.86748 0.93434 1.21137 1.00956 0.94190 1.02155 1.21327 0.91631 0.97768 0.94719 1.19132 0.95955 0.93408 1.08734 1.20758 0.83720 0.83387 0.73673 1.90868 1.23041 1.84541 1.45518 1.84557 1.52729 1.24257 1.70692 1.21243 0.99802 0.89860 0.93614 1.21062 0.93043 1.00961 1.01817 1.21977 0.77030 1.00312 1.00336 0.92380 0.92028 0.92594 0.87152 0.92302 0.89089 0.87219 0.72996 0.86879 0.83651 0.70501 0.82450 0.80878 0.93362 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.40 13.96 21.45 0.30 -58.10 16 2 C 0.03 1.63 5.45 84.66 0.46 2.09 16 3 Si 0.94 49.19 24.32 68.60 1.67 50.86 16 4 H -0.28 -15.09 6.92 99.48 0.69 -14.40 16 5 H -0.30 -15.29 7.11 99.48 0.71 -14.58 16 6 H -0.27 -13.74 6.53 99.48 0.65 -13.09 16 7 C -0.51 -28.15 9.15 25.60 0.23 -27.92 16 8 H 0.05 3.07 7.99 -2.91 -0.02 3.05 16 9 C 0.00 0.16 1.83 -11.61 -0.02 0.14 16 10 H 0.01 0.69 7.20 -2.39 -0.02 0.67 16 11 C -0.10 -3.28 5.11 30.62 0.16 -3.13 16 12 C -0.13 -2.80 6.08 30.67 0.19 -2.61 16 13 C 0.10 2.10 6.43 86.36 0.56 2.65 16 14 N -0.62 -20.00 2.98 -837.76 -2.50 -22.49 16 15 C 0.69 23.38 7.99 179.05 1.43 24.81 16 16 O -0.62 -26.98 13.51 -3.95 -0.05 -27.03 16 17 N -0.67 -15.11 5.22 -317.17 -1.66 -16.77 16 18 C 0.20 4.72 6.28 38.38 0.24 4.96 16 19 C -0.16 -4.55 8.62 22.35 0.19 -4.36 16 20 C -0.04 -0.83 9.60 22.51 0.22 -0.62 16 21 C -0.17 -3.60 5.88 -20.09 -0.12 -3.72 16 22 C 0.54 11.10 8.26 70.25 0.58 11.68 16 23 O -0.55 -13.58 17.12 19.82 0.34 -13.24 16 24 O -0.51 -7.73 12.67 -56.67 -0.72 -8.44 16 25 C -0.03 -0.47 9.58 22.51 0.22 -0.25 16 26 C -0.15 -2.40 9.94 22.35 0.22 -2.17 16 27 C 0.13 5.37 5.08 86.22 0.44 5.80 16 28 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 29 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 34 H 0.11 1.22 5.58 -2.39 -0.01 1.21 16 35 H 0.43 5.73 6.29 -92.71 -0.58 5.15 16 36 H 0.11 3.91 6.43 -2.91 -0.02 3.89 16 37 H 0.15 3.09 7.60 -2.91 -0.02 3.06 16 38 H 0.43 2.39 9.11 -74.05 -0.67 1.72 16 39 H 0.16 2.26 7.64 -2.91 -0.02 2.24 16 40 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 41 H 0.05 2.39 2.34 -2.38 -0.01 2.38 16 42 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 Total: -1.00 -81.19 341.01 2.13 -79.06 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -0.25 Total: 8.80 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: 4.99 Total: 7.36 kcal Atomic # 7 Polarization: -93.51 SS G_CDS: -3.85 Total: -97.36 kcal Atomic # 8 Polarization: -48.28 SS G_CDS: -0.43 Total: -48.71 kcal Atomic # 14 Polarization: 49.19 SS G_CDS: 1.67 Total: 50.86 kcal Total: -81.19 2.13 -79.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064222.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.613 kcal (2) G-P(sol) polarization free energy of solvation -81.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds