Wall clock time and date at job start Tue Mar 31 2020 11:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 119.99774 * 2 1 4 4 H 1.48503 * 109.47216 * 274.98915 * 3 2 1 5 5 H 1.48500 * 109.47337 * 34.99014 * 3 2 1 6 6 H 1.48499 * 109.47199 * 154.98999 * 3 2 1 7 7 C 1.37872 * 119.99953 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99775 * 189.43441 * 7 2 1 9 9 C 1.50699 * 120.00515 * 9.43938 * 7 2 1 10 10 H 1.09004 * 109.49316 * 305.35598 * 9 7 2 11 11 C 1.53041 * 109.50249 * 185.29583 * 9 7 2 12 12 C 1.53037 * 109.53828 * 178.65083 * 11 9 7 13 13 C 1.53185 * 109.31459 * 61.36221 * 12 11 9 14 14 N 1.46925 * 108.77595 * 305.36192 * 13 12 11 15 15 C 1.34779 * 120.63204 * 233.58385 * 14 13 12 16 16 O 1.21584 * 120.00117 * 184.94999 * 15 14 13 17 17 N 1.34769 * 119.99960 * 4.95199 * 15 14 13 18 18 C 1.39404 * 120.00101 * 184.78554 * 17 15 14 19 19 C 1.39153 * 119.91740 * 322.72334 * 18 17 15 20 20 C 1.37644 * 120.07983 * 180.27231 * 19 18 17 21 21 C 1.39816 * 119.91609 * 0.02562 * 20 19 18 22 22 C 1.47443 * 120.07359 * 179.97438 * 21 20 19 23 23 O 1.21510 * 119.99582 * 180.02562 * 22 21 20 24 24 O 1.34750 * 120.00223 * 0.02562 * 22 21 20 25 25 C 1.39808 * 119.84396 * 359.97438 * 21 20 19 26 26 C 1.37639 * 119.92347 * 359.97438 * 25 21 20 27 27 C 1.46928 * 118.73905 * 53.86486 * 14 13 12 28 28 H 0.96996 * 120.00557 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.46150 * 58.62322 * 11 9 7 30 30 H 1.09000 * 109.45699 * 298.66753 * 11 9 7 31 31 H 1.09005 * 109.49734 * 301.40640 * 12 11 9 32 32 H 1.08997 * 109.49721 * 181.31740 * 12 11 9 33 33 H 1.09003 * 109.58422 * 185.57857 * 13 12 11 34 34 H 1.08996 * 109.70428 * 65.22407 * 13 12 11 35 35 H 0.96996 * 120.00585 * 4.78793 * 17 15 14 36 36 H 1.07999 * 119.96620 * 0.25570 * 19 18 17 37 37 H 1.07995 * 120.04241 * 180.02562 * 20 19 18 38 38 H 0.96702 * 116.99887 * 179.97438 * 24 22 21 39 39 H 1.08004 * 120.04284 * 179.97438 * 25 21 20 40 40 H 1.08001 * 119.96512 * 179.97438 * 26 25 21 41 41 H 1.09007 * 109.58865 * 65.92080 * 27 14 13 42 42 H 1.08998 * 109.59043 * 186.35262 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3911 2.1073 -1.3948 5 1 1.5032 2.6199 0.8028 6 1 3.5954 1.4121 0.5919 7 6 2.0045 -1.1940 0.0005 8 1 3.0736 -1.2002 0.1539 9 6 1.2664 -2.4904 -0.2129 10 1 0.4578 -2.5724 0.5134 11 6 2.2329 -3.6638 -0.0358 12 6 1.4770 -4.9817 -0.2192 13 6 0.8989 -5.0412 -1.6365 14 7 0.0831 -3.8408 -1.8653 15 6 -1.1938 -3.9477 -2.2834 16 8 -1.8301 -2.9481 -2.5555 17 7 -1.7652 -5.1627 -2.3998 18 6 -3.0505 -5.2809 -2.9264 19 6 -4.0125 -4.3197 -2.6313 20 6 -5.2843 -4.4361 -3.1448 21 6 -5.6090 -5.5220 -3.9635 22 6 -6.9704 -5.6504 -4.5150 23 8 -7.2512 -6.5949 -5.2259 24 8 -7.9031 -4.7203 -4.2307 25 6 -4.6399 -6.4857 -4.2578 26 6 -3.3699 -6.3624 -3.7417 27 6 0.6876 -2.5215 -1.6356 28 1 -0.4851 0.8400 0.0004 29 1 2.6662 -3.6296 0.9638 30 1 3.0278 -3.5947 -0.7784 31 1 0.6663 -5.0403 0.5072 32 1 2.1609 -5.8172 -0.0699 33 1 0.2774 -5.9306 -1.7406 34 1 1.7104 -5.0754 -2.3633 35 1 -1.2822 -5.9550 -2.1173 36 1 -3.7612 -3.4816 -1.9983 37 1 -6.0303 -3.6896 -2.9157 38 1 -8.7811 -4.8471 -4.6155 39 1 -4.8874 -7.3261 -4.8895 40 1 -2.6209 -7.1067 -3.9683 41 1 1.4838 -2.3531 -2.3607 42 1 -0.0733 -1.7479 -1.7390 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601064223.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:43 Heat of formation + Delta-G solvation = -89.296621 kcal Electronic energy + Delta-G solvation = -26193.006636 eV Core-core repulsion = 22330.955719 eV Total energy + Delta-G solvation = -3862.050918 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.79563 -40.19806 -38.61906 -36.94671 -36.21118 -34.72520 -33.38230 -31.94427 -31.13905 -30.20166 -29.61419 -25.38023 -25.12880 -23.82813 -22.93702 -21.99804 -21.45490 -20.16285 -19.10651 -18.28294 -18.13957 -17.48478 -17.07355 -16.24358 -15.74449 -15.41825 -15.05551 -14.63897 -14.51000 -14.38429 -13.93262 -13.80664 -13.56279 -13.42078 -13.22690 -12.75705 -12.64260 -12.56799 -12.27616 -12.04822 -11.73083 -11.36691 -11.09309 -10.99740 -10.79510 -10.65136 -10.48665 -10.37496 -10.26509 -9.99502 -9.68599 -9.18060 -9.12510 -9.06179 -8.46586 -8.31720 -7.84964 -6.08018 -4.12605 0.57790 1.31285 2.39849 2.81682 2.92445 3.28494 3.36681 3.38039 3.42929 3.78994 4.05263 4.39889 4.71124 4.84508 4.98170 5.04974 5.19194 5.24000 5.31851 5.35736 5.46953 5.47994 5.83231 5.90098 6.02448 6.08445 6.18689 6.19834 6.22445 6.30635 6.44462 6.46202 6.52350 6.68798 6.84718 6.86595 6.93891 7.07893 7.23888 7.59228 7.74542 7.77518 7.91232 8.20041 8.32420 8.85512 8.92206 9.52220 10.99884 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019001 B = 0.002940 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.238282 B = 9520.948403 C =10754.126508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.066 3.934 3 Si 0.889 3.111 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.039 3.961 10 H 0.037 0.963 11 C -0.110 4.110 12 C -0.134 4.134 13 C 0.113 3.887 14 N -0.614 5.614 15 C 0.698 3.302 16 O -0.564 6.564 17 N -0.694 5.694 18 C 0.219 3.781 19 C -0.136 4.136 20 C -0.037 4.037 21 C -0.164 4.164 22 C 0.533 3.467 23 O -0.525 6.525 24 O -0.512 6.512 25 C -0.032 4.032 26 C -0.169 4.169 27 C 0.133 3.867 28 H 0.263 0.737 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.406 0.594 36 H 0.153 0.847 37 H 0.140 0.860 38 H 0.412 0.588 39 H 0.138 0.862 40 H 0.134 0.866 41 H 0.046 0.954 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.370 -14.301 -5.674 17.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.138 4.138 3 Si 0.716 3.284 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.563 4.563 8 H 0.077 0.923 9 C 0.019 3.981 10 H 0.055 0.945 11 C -0.148 4.148 12 C -0.173 4.173 13 C -0.011 4.011 14 N -0.349 5.349 15 C 0.400 3.600 16 O -0.440 6.440 17 N -0.344 5.344 18 C 0.122 3.878 19 C -0.156 4.156 20 C -0.056 4.056 21 C -0.166 4.166 22 C 0.378 3.622 23 O -0.416 6.416 24 O -0.324 6.324 25 C -0.051 4.051 26 C -0.190 4.190 27 C 0.012 3.988 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.244 0.756 36 H 0.170 0.830 37 H 0.158 0.842 38 H 0.270 0.730 39 H 0.156 0.844 40 H 0.152 0.848 41 H 0.065 0.935 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.542 -13.566 -5.854 16.589 hybrid contribution 0.201 0.381 -0.152 0.456 sum -7.342 -13.185 -6.006 16.243 Atomic orbital electron populations 1.69967 1.05860 1.26970 1.48550 1.25035 0.94795 0.99283 0.94654 0.86636 0.79967 0.83672 0.78104 1.20581 1.21247 1.19880 1.21030 0.94132 0.90461 1.50628 0.92306 1.19080 0.94389 0.92395 0.92214 0.94501 1.21623 0.98573 0.93924 1.00692 1.21965 1.00179 0.99432 0.95695 1.21585 0.94777 0.86722 0.98006 1.47848 1.09424 1.09462 1.68214 1.15952 0.82435 0.82686 0.78890 1.90942 1.62472 1.34994 1.55559 1.42999 1.15321 1.09688 1.66408 1.17872 0.83843 0.94794 0.91335 1.21462 0.91220 1.00876 1.02050 1.21365 0.96342 0.95285 0.92657 1.18937 0.90989 1.00122 1.06576 1.20874 0.85532 0.78763 0.76996 1.90871 1.81394 1.32593 1.36702 1.84598 1.25048 1.51149 1.71571 1.20924 0.91127 0.96916 0.96138 1.20818 0.97546 1.00489 1.00182 1.22310 0.97534 0.80263 0.98679 0.92669 0.92761 0.93149 0.92000 0.92037 0.92144 0.91530 0.75578 0.82975 0.84249 0.73009 0.84417 0.84847 0.93546 0.87544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.92 12.22 55.43 0.68 -24.25 16 2 C 0.07 1.78 5.24 -17.82 -0.09 1.69 16 3 Si 0.89 20.77 29.55 -169.99 -5.02 15.75 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.52 -13.67 8.48 -34.44 -0.29 -13.96 16 8 H 0.06 1.51 7.77 -52.48 -0.41 1.10 16 9 C 0.04 0.90 2.12 -91.43 -0.19 0.70 16 10 H 0.04 0.98 8.09 -51.93 -0.42 0.56 16 11 C -0.11 -2.04 5.11 -26.69 -0.14 -2.17 16 12 C -0.13 -1.93 6.08 -26.62 -0.16 -2.09 16 13 C 0.11 1.53 6.43 -3.72 -0.02 1.51 16 14 N -0.61 -11.24 2.97 -178.24 -0.53 -11.77 16 15 C 0.70 13.01 8.13 -86.92 -0.71 12.30 16 16 O -0.56 -12.81 13.31 5.29 0.07 -12.74 16 17 N -0.69 -9.61 5.20 -14.22 -0.07 -9.69 16 18 C 0.22 2.98 6.26 -83.74 -0.52 2.45 16 19 C -0.14 -2.00 8.66 -39.46 -0.34 -2.34 16 20 C -0.04 -0.48 9.60 -39.21 -0.38 -0.85 16 21 C -0.16 -2.00 5.87 -104.97 -0.62 -2.61 16 22 C 0.53 6.28 8.26 34.48 0.28 6.57 16 23 O -0.52 -7.32 17.12 -19.27 -0.33 -7.65 16 24 O -0.51 -4.61 12.67 -40.63 -0.51 -5.12 16 25 C -0.03 -0.36 9.58 -39.21 -0.38 -0.73 16 26 C -0.17 -1.84 9.95 -39.46 -0.39 -2.24 16 27 C 0.13 2.99 5.50 -3.48 -0.02 2.97 16 28 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.61 5.57 -51.93 -0.29 0.32 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.41 4.25 6.31 -40.82 -0.26 3.99 16 36 H 0.15 2.63 6.35 -52.49 -0.33 2.30 16 37 H 0.14 1.57 7.60 -52.49 -0.40 1.17 16 38 H 0.41 1.75 9.11 45.56 0.42 2.17 16 39 H 0.14 1.36 7.64 -52.48 -0.40 0.96 16 40 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.11 2.85 5.97 -51.93 -0.31 2.54 16 LS Contribution 349.28 15.07 5.26 5.26 Total: -1.00 -32.87 349.28 -8.93 -41.80 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -4.50 Total: 7.20 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -3.97 Total: 1.19 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: 0.07 Total: -45.70 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.77 Total: -25.51 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.87 -8.93 -41.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064223.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.500 kcal (2) G-P(sol) polarization free energy of solvation -32.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds