Wall clock time and date at job start Tue Mar 31 2020 11:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 119.99774 * 2 1 4 4 H 1.48503 * 109.47216 * 274.98915 * 3 2 1 5 5 H 1.48500 * 109.47337 * 34.99014 * 3 2 1 6 6 H 1.48499 * 109.47199 * 154.98999 * 3 2 1 7 7 C 1.37872 * 119.99953 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99775 * 189.43441 * 7 2 1 9 9 C 1.50699 * 120.00515 * 9.43938 * 7 2 1 10 10 H 1.09004 * 109.49316 * 305.35598 * 9 7 2 11 11 C 1.53041 * 109.50249 * 185.29583 * 9 7 2 12 12 C 1.53037 * 109.53828 * 178.65083 * 11 9 7 13 13 C 1.53185 * 109.31459 * 61.36221 * 12 11 9 14 14 N 1.46925 * 108.77595 * 305.36192 * 13 12 11 15 15 C 1.34779 * 120.63204 * 233.58385 * 14 13 12 16 16 O 1.21584 * 120.00117 * 184.94999 * 15 14 13 17 17 N 1.34769 * 119.99960 * 4.95199 * 15 14 13 18 18 C 1.39404 * 120.00101 * 184.78554 * 17 15 14 19 19 C 1.39153 * 119.91740 * 322.72334 * 18 17 15 20 20 C 1.37644 * 120.07983 * 180.27231 * 19 18 17 21 21 C 1.39816 * 119.91609 * 0.02562 * 20 19 18 22 22 C 1.47443 * 120.07359 * 179.97438 * 21 20 19 23 23 O 1.21510 * 119.99582 * 180.02562 * 22 21 20 24 24 O 1.34750 * 120.00223 * 0.02562 * 22 21 20 25 25 C 1.39808 * 119.84396 * 359.97438 * 21 20 19 26 26 C 1.37639 * 119.92347 * 359.97438 * 25 21 20 27 27 C 1.46928 * 118.73905 * 53.86486 * 14 13 12 28 28 H 0.96996 * 120.00557 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.46150 * 58.62322 * 11 9 7 30 30 H 1.09000 * 109.45699 * 298.66753 * 11 9 7 31 31 H 1.09005 * 109.49734 * 301.40640 * 12 11 9 32 32 H 1.08997 * 109.49721 * 181.31740 * 12 11 9 33 33 H 1.09003 * 109.58422 * 185.57857 * 13 12 11 34 34 H 1.08996 * 109.70428 * 65.22407 * 13 12 11 35 35 H 0.96996 * 120.00585 * 4.78793 * 17 15 14 36 36 H 1.07999 * 119.96620 * 0.25570 * 19 18 17 37 37 H 1.07995 * 120.04241 * 180.02562 * 20 19 18 38 38 H 0.96702 * 116.99887 * 179.97438 * 24 22 21 39 39 H 1.08004 * 120.04284 * 179.97438 * 25 21 20 40 40 H 1.08001 * 119.96512 * 179.97438 * 26 25 21 41 41 H 1.09007 * 109.58865 * 65.92080 * 27 14 13 42 42 H 1.08998 * 109.59043 * 186.35262 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3911 2.1073 -1.3948 5 1 1.5032 2.6199 0.8028 6 1 3.5954 1.4121 0.5919 7 6 2.0045 -1.1940 0.0005 8 1 3.0736 -1.2002 0.1539 9 6 1.2664 -2.4904 -0.2129 10 1 0.4578 -2.5724 0.5134 11 6 2.2329 -3.6638 -0.0358 12 6 1.4770 -4.9817 -0.2192 13 6 0.8989 -5.0412 -1.6365 14 7 0.0831 -3.8408 -1.8653 15 6 -1.1938 -3.9477 -2.2834 16 8 -1.8301 -2.9481 -2.5555 17 7 -1.7652 -5.1627 -2.3998 18 6 -3.0505 -5.2809 -2.9264 19 6 -4.0125 -4.3197 -2.6313 20 6 -5.2843 -4.4361 -3.1448 21 6 -5.6090 -5.5220 -3.9635 22 6 -6.9704 -5.6504 -4.5150 23 8 -7.2512 -6.5949 -5.2259 24 8 -7.9031 -4.7203 -4.2307 25 6 -4.6399 -6.4857 -4.2578 26 6 -3.3699 -6.3624 -3.7417 27 6 0.6876 -2.5215 -1.6356 28 1 -0.4851 0.8400 0.0004 29 1 2.6662 -3.6296 0.9638 30 1 3.0278 -3.5947 -0.7784 31 1 0.6663 -5.0403 0.5072 32 1 2.1609 -5.8172 -0.0699 33 1 0.2774 -5.9306 -1.7406 34 1 1.7104 -5.0754 -2.3633 35 1 -1.2822 -5.9550 -2.1173 36 1 -3.7612 -3.4816 -1.9983 37 1 -6.0303 -3.6896 -2.9157 38 1 -8.7811 -4.8471 -4.6155 39 1 -4.8874 -7.3261 -4.8895 40 1 -2.6209 -7.1067 -3.9683 41 1 1.4838 -2.3531 -2.3607 42 1 -0.0733 -1.7479 -1.7390 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601064223.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:42 Heat of formation + Delta-G solvation = -111.087274 kcal Electronic energy + Delta-G solvation = -26193.951550 eV Core-core repulsion = 22330.955719 eV Total energy + Delta-G solvation = -3862.995831 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.99179 -41.23897 -39.75501 -38.36711 -37.08145 -36.04430 -35.15206 -33.50023 -32.11361 -31.67786 -30.87260 -27.10232 -26.55182 -25.02322 -23.94046 -23.50042 -22.53059 -21.53053 -20.50628 -19.49632 -19.09058 -18.67571 -18.28858 -18.01308 -16.81438 -16.63069 -16.53915 -16.25700 -15.71035 -15.49221 -15.24493 -15.16044 -14.69389 -14.53332 -14.46766 -14.32250 -14.08143 -13.67811 -13.58491 -13.46226 -12.87818 -12.74033 -12.59946 -12.37633 -12.34152 -12.23321 -11.87844 -11.75739 -11.62956 -11.50231 -11.22260 -10.95327 -10.81020 -10.50802 -10.05778 -9.62916 -9.17145 -8.14762 -6.25683 -0.41372 0.35431 1.36939 1.41362 1.42558 1.52047 1.59118 2.07582 2.11866 2.42141 2.76448 2.83847 3.17733 3.78575 3.91510 3.99093 4.07435 4.15678 4.22053 4.28040 4.45055 4.48491 4.59792 4.71588 4.77777 4.82666 4.96663 5.08916 5.10203 5.17045 5.20087 5.26297 5.29886 5.32277 5.40548 5.54129 5.58099 5.60715 5.84587 5.87248 5.92975 6.01246 6.34233 6.86869 6.91223 6.98354 7.42704 7.46391 8.92248 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019001 B = 0.002940 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.238282 B = 9520.948403 C =10754.126508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.013 3.987 3 Si 0.950 3.050 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.261 1.261 7 C -0.535 4.535 8 H 0.062 0.938 9 C 0.038 3.962 10 H -0.008 1.008 11 C -0.106 4.106 12 C -0.127 4.127 13 C 0.107 3.893 14 N -0.618 5.618 15 C 0.693 3.307 16 O -0.615 6.615 17 N -0.672 5.672 18 C 0.199 3.801 19 C -0.158 4.158 20 C -0.038 4.038 21 C -0.168 4.168 22 C 0.539 3.461 23 O -0.547 6.547 24 O -0.508 6.508 25 C -0.029 4.029 26 C -0.147 4.147 27 C 0.149 3.851 28 H 0.259 0.741 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.424 0.576 36 H 0.115 0.885 37 H 0.146 0.854 38 H 0.433 0.567 39 H 0.158 0.842 40 H 0.172 0.828 41 H 0.046 0.954 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.406 -17.342 -6.737 19.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.187 4.187 3 Si 0.776 3.224 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.574 4.574 8 H 0.080 0.920 9 C 0.018 3.982 10 H 0.011 0.989 11 C -0.144 4.144 12 C -0.165 4.165 13 C -0.015 4.015 14 N -0.353 5.353 15 C 0.395 3.605 16 O -0.495 6.495 17 N -0.324 5.324 18 C 0.103 3.897 19 C -0.179 4.179 20 C -0.057 4.057 21 C -0.171 4.171 22 C 0.385 3.615 23 O -0.440 6.440 24 O -0.322 6.322 25 C -0.048 4.048 26 C -0.167 4.167 27 C 0.026 3.974 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.105 0.895 35 H 0.266 0.734 36 H 0.133 0.867 37 H 0.163 0.837 38 H 0.295 0.705 39 H 0.176 0.824 40 H 0.190 0.810 41 H 0.064 0.936 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.578 -16.675 -6.906 19.209 hybrid contribution -0.196 1.305 0.181 1.332 sum -6.774 -15.370 -6.725 18.093 Atomic orbital electron populations 1.70133 1.07516 1.27296 1.50293 1.25836 0.95411 1.02783 0.94621 0.85656 0.79103 0.79607 0.78019 1.20348 1.21461 1.18509 1.21493 0.94435 0.91897 1.49528 0.91969 1.18995 0.93991 0.93802 0.91387 0.98939 1.21518 0.97921 0.94155 1.00800 1.21921 1.00259 0.98333 0.95945 1.21979 0.95584 0.85976 0.97955 1.47709 1.09900 1.09503 1.68184 1.16142 0.82322 0.83453 0.78543 1.90917 1.63678 1.37275 1.57620 1.42589 1.15372 1.08516 1.65917 1.18064 0.83234 0.95755 0.92695 1.21274 0.92856 1.00776 1.03013 1.21353 0.95681 0.95909 0.92737 1.19141 0.91828 0.99984 1.06099 1.20740 0.85679 0.78630 0.76409 1.90865 1.81817 1.33535 1.37749 1.84560 1.26150 1.50113 1.71349 1.21232 0.90850 0.96947 0.95745 1.21100 0.98158 0.99580 0.97909 1.21660 0.95945 0.81624 0.98135 0.93206 0.93143 0.92171 0.93056 0.87527 0.87753 0.89494 0.73350 0.86665 0.83654 0.70513 0.82412 0.81014 0.93567 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.03 12.22 21.45 0.26 -54.77 16 2 C 0.01 0.75 5.24 84.65 0.44 1.19 16 3 Si 0.95 43.75 29.55 68.60 2.03 45.78 16 4 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 6 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.54 -28.69 8.48 25.60 0.22 -28.47 16 8 H 0.06 3.21 7.77 -2.91 -0.02 3.19 16 9 C 0.04 1.82 2.12 -11.32 -0.02 1.79 16 10 H -0.01 -0.43 8.09 -2.39 -0.02 -0.45 16 11 C -0.11 -3.80 5.11 30.62 0.16 -3.65 16 12 C -0.13 -3.26 6.08 30.67 0.19 -3.07 16 13 C 0.11 2.55 6.43 86.36 0.56 3.10 16 14 N -0.62 -22.58 2.97 -836.07 -2.48 -25.06 16 15 C 0.69 26.32 8.13 179.06 1.46 27.77 16 16 O -0.62 -29.83 13.31 -3.98 -0.05 -29.88 16 17 N -0.67 -17.71 5.20 -317.17 -1.65 -19.36 16 18 C 0.20 5.21 6.26 38.38 0.24 5.45 16 19 C -0.16 -4.86 8.66 22.35 0.19 -4.67 16 20 C -0.04 -0.97 9.60 22.51 0.22 -0.76 16 21 C -0.17 -3.86 5.87 -20.09 -0.12 -3.98 16 22 C 0.54 11.83 8.26 70.25 0.58 12.41 16 23 O -0.55 -14.20 17.12 19.80 0.34 -13.86 16 24 O -0.51 -8.33 12.67 -56.61 -0.72 -9.05 16 25 C -0.03 -0.57 9.58 22.51 0.22 -0.35 16 26 C -0.15 -2.73 9.95 22.35 0.22 -2.50 16 27 C 0.15 7.01 5.50 86.51 0.48 7.49 16 28 H 0.26 15.07 8.31 -92.71 -0.77 14.29 16 29 H 0.05 1.81 8.14 -2.39 -0.02 1.80 16 30 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 32 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.10 1.58 5.57 -2.39 -0.01 1.57 16 34 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.42 7.44 6.31 -92.71 -0.58 6.86 16 36 H 0.12 4.41 6.35 -2.91 -0.02 4.40 16 37 H 0.15 3.38 7.60 -2.91 -0.02 3.36 16 38 H 0.43 2.83 9.11 -74.06 -0.67 2.16 16 39 H 0.16 2.52 7.64 -2.91 -0.02 2.50 16 40 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 41 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 42 H 0.06 3.22 5.97 -2.39 -0.01 3.20 16 Total: -1.00 -78.22 349.28 2.56 -75.66 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -0.18 Total: 18.79 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: 5.02 Total: 11.75 kcal Atomic # 7 Polarization: -95.32 SS G_CDS: -3.87 Total: -99.19 kcal Atomic # 8 Polarization: -52.36 SS G_CDS: -0.43 Total: -52.80 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -78.22 2.56 -75.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064223.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.431 kcal (2) G-P(sol) polarization free energy of solvation -78.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds