Wall clock time and date at job start Tue Mar 31 2020 12:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99486 * 2 1 4 4 H 1.48503 * 109.47047 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47282 * 300.00094 * 3 2 1 6 6 H 1.48498 * 109.47273 * 59.99962 * 3 2 1 7 7 C 1.37872 * 120.00333 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00106 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00073 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.49779 * 59.93564 * 9 7 2 11 11 C 1.53044 * 109.49776 * 179.97438 * 9 7 2 12 12 C 1.53043 * 109.53659 * 181.31951 * 11 9 7 13 13 C 1.53190 * 109.31060 * 298.63220 * 12 11 9 14 14 N 1.46926 * 108.77869 * 54.63635 * 13 12 11 15 15 C 1.34772 * 120.62987 * 126.36253 * 14 13 12 16 16 O 1.21282 * 120.00095 * 180.02562 * 15 14 13 17 17 C 1.50696 * 120.00093 * 0.02562 * 15 14 13 18 18 C 1.50708 * 109.47146 * 179.97438 * 17 15 14 19 19 C 1.38624 * 120.32281 * 89.99769 * 18 17 15 20 20 C 1.38586 * 118.48945 * 179.97438 * 19 18 17 21 21 C 1.39345 * 119.05740 * 0.02562 * 20 19 18 22 22 C 1.48067 * 119.72801 * 180.02562 * 21 20 19 23 23 O 1.21426 * 120.00196 * 359.97131 * 22 21 20 24 24 O 1.34679 * 120.00371 * 179.97438 * 22 21 20 25 25 N 1.32754 * 120.54671 * 359.97438 * 21 20 19 26 26 C 1.31498 * 121.64124 * 0.02562 * 25 21 20 27 27 C 1.46923 * 118.73730 * 306.64897 * 14 13 12 28 28 H 0.96994 * 120.00866 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.46117 * 61.29443 * 11 9 7 30 30 H 1.09008 * 109.44680 * 301.32646 * 11 9 7 31 31 H 1.09003 * 109.49830 * 178.68324 * 12 11 9 32 32 H 1.08992 * 109.50009 * 58.58400 * 12 11 9 33 33 H 1.08998 * 109.58686 * 294.84570 * 13 12 11 34 34 H 1.09004 * 109.70503 * 174.49922 * 13 12 11 35 35 H 1.08996 * 109.47404 * 59.99782 * 17 15 14 36 36 H 1.08998 * 109.47475 * 299.99544 * 17 15 14 37 37 H 1.07996 * 120.75208 * 359.95927 * 19 18 17 38 38 H 1.07999 * 120.47283 * 180.02562 * 20 19 18 39 39 H 0.96700 * 117.00274 * 179.97438 * 24 22 21 40 40 H 1.07997 * 119.54682 * 179.97438 * 26 25 21 41 41 H 1.09002 * 109.58637 * 173.14093 * 27 14 13 42 42 H 1.09001 * 109.58662 * 293.56402 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 1 0.6238 -2.5570 -0.8890 11 6 2.2452 -3.6627 0.0005 12 6 1.4813 -4.9884 -0.0327 13 6 0.6061 -5.1002 1.2196 14 7 -0.2526 -3.9110 1.3042 15 6 -1.5890 -4.0362 1.4257 16 8 -2.2870 -3.0468 1.4942 17 6 -2.2159 -5.4056 1.4765 18 6 -3.7105 -5.2691 1.6144 19 6 -4.5139 -5.1998 0.4868 20 6 -5.8835 -5.0750 0.6577 21 6 -6.4024 -5.0234 1.9499 22 6 -7.8635 -4.8908 2.1496 23 8 -8.6043 -4.8270 1.1895 24 8 -8.3711 -4.8409 3.3961 25 7 -5.5977 -5.0930 3.0034 26 6 -4.2949 -5.2116 2.8697 27 6 0.3728 -2.5827 1.2475 28 1 -0.4851 0.8399 0.0004 29 1 2.8564 -3.6182 0.9019 30 1 2.8873 -3.5915 -0.8775 31 1 2.1901 -5.8162 -0.0563 32 1 0.8511 -5.0230 -0.9213 33 1 1.2399 -5.1571 2.1045 34 1 -0.0137 -5.9947 1.1561 35 1 -1.8212 -5.9545 2.3315 36 1 -1.9833 -5.9461 0.5590 37 1 -4.0822 -5.2418 -0.5022 38 1 -6.5393 -5.0186 -0.1985 39 1 -9.3308 -4.7536 3.4761 40 1 -3.6718 -5.2649 3.7502 41 1 -0.4009 -1.8164 1.1999 42 1 0.9872 -2.4299 2.1347 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601064346.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:51 Heat of formation + Delta-G solvation = -95.342569 kcal Electronic energy + Delta-G solvation = -26153.631722 eV Core-core repulsion = 22291.318632 eV Total energy + Delta-G solvation = -3862.313090 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.96683 -39.90710 -39.16478 -36.82229 -36.31420 -33.86165 -33.35973 -32.18545 -31.82833 -30.00493 -28.67211 -25.30729 -24.98547 -23.97522 -23.57670 -21.91293 -21.57154 -19.83161 -18.58583 -18.28338 -17.74215 -16.92441 -16.61629 -16.18818 -15.93534 -15.70024 -14.96055 -14.74700 -14.69944 -14.37317 -13.85089 -13.77392 -13.42980 -13.34854 -13.30826 -12.78467 -12.64234 -12.56629 -12.05526 -11.98787 -11.75703 -11.69735 -11.08594 -11.05624 -10.96115 -10.54531 -10.45127 -10.29531 -10.04664 -9.95742 -9.75689 -9.49785 -9.22835 -9.17414 -8.86891 -8.48255 -7.83387 -6.04306 -4.13289 0.32908 1.09244 2.22118 2.67851 3.10716 3.27205 3.36064 3.38576 3.49834 3.78762 4.08965 4.39278 4.47312 4.65092 4.74940 4.84796 4.92813 5.04171 5.20461 5.26344 5.30707 5.40789 5.44212 5.54921 5.58550 5.82849 5.90908 5.99862 6.08742 6.18740 6.23712 6.36787 6.53481 6.59969 6.78469 6.90871 7.07058 7.20474 7.44902 7.59047 7.78897 7.81554 7.94361 8.16580 8.33644 8.75600 8.91445 9.52964 11.00892 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016860 B = 0.003007 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.333247 B = 9309.520369 C =10418.678200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.040 3.960 10 H 0.028 0.972 11 C -0.112 4.112 12 C -0.134 4.134 13 C 0.107 3.893 14 N -0.605 5.605 15 C 0.506 3.494 16 O -0.530 6.530 17 C -0.107 4.107 18 C -0.070 4.070 19 C -0.070 4.070 20 C -0.099 4.099 21 C 0.075 3.925 22 C 0.547 3.453 23 O -0.511 6.511 24 O -0.493 6.493 25 N -0.433 5.433 26 C 0.110 3.890 27 C 0.112 3.888 28 H 0.263 0.737 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.147 0.853 38 H 0.150 0.850 39 H 0.411 0.589 40 H 0.164 0.836 41 H 0.123 0.877 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.557 -15.884 3.978 18.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.077 0.923 9 C 0.020 3.980 10 H 0.046 0.954 11 C -0.149 4.149 12 C -0.172 4.172 13 C -0.017 4.017 14 N -0.338 5.338 15 C 0.292 3.708 16 O -0.407 6.407 17 C -0.148 4.148 18 C -0.072 4.072 19 C -0.096 4.096 20 C -0.119 4.119 21 C -0.061 4.061 22 C 0.389 3.611 23 O -0.399 6.399 24 O -0.302 6.302 25 N -0.143 5.143 26 C -0.051 4.051 27 C -0.008 4.008 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.164 0.836 38 H 0.168 0.832 39 H 0.269 0.731 40 H 0.182 0.818 41 H 0.141 0.859 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.281 -15.186 4.556 17.887 hybrid contribution 0.364 0.959 -0.823 1.315 sum -7.917 -14.227 3.733 16.704 Atomic orbital electron populations 1.69880 1.05742 1.26802 1.49342 1.25055 0.94882 0.99311 0.94791 0.86540 0.80034 0.83782 0.77679 1.19782 1.20992 1.20947 1.21103 0.92949 0.90078 1.51843 0.92297 1.18895 0.92633 0.92369 0.94054 0.95405 1.21634 0.98594 0.94046 1.00650 1.21946 0.98677 0.99191 0.97427 1.21678 0.93654 0.87662 0.98690 1.48519 1.05191 1.09086 1.70971 1.20141 0.82625 0.90077 0.77938 1.90764 1.61015 1.39364 1.49550 1.20799 0.90763 0.97812 1.05417 1.20753 0.95965 0.95973 0.94538 1.21491 0.92522 0.95972 0.99617 1.22025 0.96112 0.96503 0.97235 1.19857 0.90685 1.05178 0.90375 1.20514 0.88094 0.71863 0.80590 1.90898 1.60140 1.46586 1.42243 1.84697 1.30567 1.84439 1.30532 1.67616 1.05303 1.08551 1.32855 1.22679 0.90083 0.95537 0.96769 1.22222 0.98769 0.81201 0.98580 0.92673 0.93139 0.92986 0.92147 0.92146 0.91856 0.91089 0.87575 0.87602 0.83566 0.83223 0.73089 0.81845 0.85909 0.93950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.28 11.39 55.43 0.63 -24.65 16 2 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 20.98 29.54 -169.99 -5.02 15.95 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -13.75 8.56 -34.45 -0.29 -14.04 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.04 0.94 2.24 -91.88 -0.21 0.73 16 10 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 11 C -0.11 -2.08 5.11 -26.69 -0.14 -2.22 16 12 C -0.13 -1.92 6.08 -26.61 -0.16 -2.09 16 13 C 0.11 1.42 6.34 -3.71 -0.02 1.40 16 14 N -0.60 -10.90 2.98 -173.04 -0.52 -11.41 16 15 C 0.51 8.91 7.69 -10.99 -0.08 8.83 16 16 O -0.53 -12.05 15.45 5.56 0.09 -11.96 16 17 C -0.11 -1.22 4.20 -29.03 -0.12 -1.34 16 18 C -0.07 -0.87 4.40 -104.35 -0.46 -1.33 16 19 C -0.07 -0.84 9.85 -39.31 -0.39 -1.23 16 20 C -0.10 -1.22 9.63 -39.04 -0.38 -1.59 16 21 C 0.07 1.02 6.75 -83.02 -0.56 0.46 16 22 C 0.55 7.01 8.32 34.76 0.29 7.30 16 23 O -0.51 -7.27 17.11 -19.21 -0.33 -7.60 16 24 O -0.49 -5.08 13.24 -40.44 -0.54 -5.62 16 25 N -0.43 -6.14 10.12 -9.81 -0.10 -6.24 16 26 C 0.11 1.41 10.86 -17.57 -0.19 1.21 16 27 C 0.11 2.58 5.38 -3.94 -0.02 2.56 16 28 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.96 8.14 -51.92 -0.42 0.54 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.68 5.93 -51.93 -0.31 0.37 16 35 H 0.11 0.88 7.89 -51.93 -0.41 0.47 16 36 H 0.11 0.95 7.65 -51.93 -0.40 0.56 16 37 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 38 H 0.15 1.61 7.64 -52.49 -0.40 1.21 16 39 H 0.41 2.01 9.11 45.56 0.42 2.42 16 40 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 41 H 0.12 3.37 5.12 -51.93 -0.27 3.10 16 42 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 354.36 15.07 5.34 5.34 Total: -1.00 -34.83 354.36 -7.98 -42.81 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -4.71 Total: 3.11 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -2.83 Total: 0.26 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 0.02 Total: -42.30 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.78 Total: -25.18 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.83 -7.98 -42.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064346.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.531 kcal (2) G-P(sol) polarization free energy of solvation -34.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds