Wall clock time and date at job start Tue Mar 31 2020 12:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99486 * 2 1 4 4 H 1.48503 * 109.47047 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47282 * 300.00094 * 3 2 1 6 6 H 1.48498 * 109.47273 * 59.99962 * 3 2 1 7 7 C 1.37872 * 120.00333 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00106 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00073 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.49779 * 59.93564 * 9 7 2 11 11 C 1.53044 * 109.49776 * 179.97438 * 9 7 2 12 12 C 1.53043 * 109.53659 * 181.31951 * 11 9 7 13 13 C 1.53190 * 109.31060 * 298.63220 * 12 11 9 14 14 N 1.46926 * 108.77869 * 54.63635 * 13 12 11 15 15 C 1.34772 * 120.62987 * 126.36253 * 14 13 12 16 16 O 1.21282 * 120.00095 * 180.02562 * 15 14 13 17 17 C 1.50696 * 120.00093 * 0.02562 * 15 14 13 18 18 C 1.50708 * 109.47146 * 179.97438 * 17 15 14 19 19 C 1.38624 * 120.32281 * 89.99769 * 18 17 15 20 20 C 1.38586 * 118.48945 * 179.97438 * 19 18 17 21 21 C 1.39345 * 119.05740 * 0.02562 * 20 19 18 22 22 C 1.48067 * 119.72801 * 180.02562 * 21 20 19 23 23 O 1.21426 * 120.00196 * 359.97131 * 22 21 20 24 24 O 1.34679 * 120.00371 * 179.97438 * 22 21 20 25 25 N 1.32754 * 120.54671 * 359.97438 * 21 20 19 26 26 C 1.31498 * 121.64124 * 0.02562 * 25 21 20 27 27 C 1.46923 * 118.73730 * 306.64897 * 14 13 12 28 28 H 0.96994 * 120.00866 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.46117 * 61.29443 * 11 9 7 30 30 H 1.09008 * 109.44680 * 301.32646 * 11 9 7 31 31 H 1.09003 * 109.49830 * 178.68324 * 12 11 9 32 32 H 1.08992 * 109.50009 * 58.58400 * 12 11 9 33 33 H 1.08998 * 109.58686 * 294.84570 * 13 12 11 34 34 H 1.09004 * 109.70503 * 174.49922 * 13 12 11 35 35 H 1.08996 * 109.47404 * 59.99782 * 17 15 14 36 36 H 1.08998 * 109.47475 * 299.99544 * 17 15 14 37 37 H 1.07996 * 120.75208 * 359.95927 * 19 18 17 38 38 H 1.07999 * 120.47283 * 180.02562 * 20 19 18 39 39 H 0.96700 * 117.00274 * 179.97438 * 24 22 21 40 40 H 1.07997 * 119.54682 * 179.97438 * 26 25 21 41 41 H 1.09002 * 109.58637 * 173.14093 * 27 14 13 42 42 H 1.09001 * 109.58662 * 293.56402 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 1 0.6238 -2.5570 -0.8890 11 6 2.2452 -3.6627 0.0005 12 6 1.4813 -4.9884 -0.0327 13 6 0.6061 -5.1002 1.2196 14 7 -0.2526 -3.9110 1.3042 15 6 -1.5890 -4.0362 1.4257 16 8 -2.2870 -3.0468 1.4942 17 6 -2.2159 -5.4056 1.4765 18 6 -3.7105 -5.2691 1.6144 19 6 -4.5139 -5.1998 0.4868 20 6 -5.8835 -5.0750 0.6577 21 6 -6.4024 -5.0234 1.9499 22 6 -7.8635 -4.8908 2.1496 23 8 -8.6043 -4.8270 1.1895 24 8 -8.3711 -4.8409 3.3961 25 7 -5.5977 -5.0930 3.0034 26 6 -4.2949 -5.2116 2.8697 27 6 0.3728 -2.5827 1.2475 28 1 -0.4851 0.8399 0.0004 29 1 2.8564 -3.6182 0.9019 30 1 2.8873 -3.5915 -0.8775 31 1 2.1901 -5.8162 -0.0563 32 1 0.8511 -5.0230 -0.9213 33 1 1.2399 -5.1571 2.1045 34 1 -0.0137 -5.9947 1.1561 35 1 -1.8212 -5.9545 2.3315 36 1 -1.9833 -5.9461 0.5590 37 1 -4.0822 -5.2418 -0.5022 38 1 -6.5393 -5.0186 -0.1985 39 1 -9.3308 -4.7536 3.4761 40 1 -3.6718 -5.2649 3.7502 41 1 -0.4009 -1.8164 1.1999 42 1 0.9872 -2.4299 2.1347 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601064346.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:50 Heat of formation + Delta-G solvation = -119.883600 kcal Electronic energy + Delta-G solvation = -26154.695901 eV Core-core repulsion = 22291.318632 eV Total energy + Delta-G solvation = -3863.377269 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.93729 -41.07638 -40.31781 -38.30633 -37.23292 -35.34582 -34.71947 -33.42959 -33.09004 -31.58335 -29.77557 -27.05763 -26.30938 -25.07773 -24.62516 -23.37908 -22.57974 -21.32990 -19.69028 -19.47610 -18.69950 -18.53807 -17.85381 -17.56036 -16.96157 -16.86895 -16.56789 -16.07551 -15.86851 -15.61098 -15.17095 -14.97053 -14.62216 -14.53739 -14.32531 -14.20970 -14.11924 -13.85961 -13.45345 -13.17365 -12.92384 -12.76560 -12.67728 -12.59760 -12.25992 -12.19772 -12.07842 -11.73834 -11.59699 -11.10566 -11.01380 -10.91547 -10.71648 -10.64870 -10.51297 -10.11451 -9.34521 -8.11811 -6.28156 -0.64121 0.16481 1.24982 1.37983 1.40381 1.51497 1.80348 1.82677 2.27234 2.41771 2.73242 3.17081 3.19160 3.53805 3.77980 3.81066 3.87321 3.98562 4.15020 4.20810 4.25093 4.40913 4.47363 4.62233 4.66818 4.67885 4.82542 4.88078 4.92666 4.95040 5.09992 5.16092 5.30212 5.34475 5.36898 5.40270 5.47699 5.56694 5.69236 5.93684 6.04056 6.34982 6.56437 6.75663 6.85713 6.93235 7.39806 7.43926 8.91039 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016860 B = 0.003007 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.333247 B = 9309.520369 C =10418.678200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.010 3.990 3 Si 0.954 3.046 4 H -0.260 1.260 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.534 4.534 8 H 0.060 0.940 9 C 0.038 3.962 10 H -0.013 1.013 11 C -0.108 4.108 12 C -0.128 4.128 13 C 0.101 3.899 14 N -0.609 5.609 15 C 0.498 3.502 16 O -0.594 6.594 17 C -0.090 4.090 18 C -0.077 4.077 19 C -0.075 4.075 20 C -0.104 4.104 21 C 0.054 3.946 22 C 0.550 3.450 23 O -0.532 6.532 24 O -0.492 6.492 25 N -0.454 5.454 26 C 0.101 3.899 27 C 0.126 3.874 28 H 0.258 0.742 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.103 0.897 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.124 0.876 35 H 0.149 0.851 36 H 0.142 0.858 37 H 0.166 0.834 38 H 0.160 0.840 39 H 0.433 0.567 40 H 0.185 0.815 41 H 0.073 0.927 42 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.249 -18.677 4.370 20.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.189 4.189 3 Si 0.779 3.221 4 H -0.184 1.184 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.573 4.573 8 H 0.078 0.922 9 C 0.019 3.981 10 H 0.005 0.995 11 C -0.146 4.146 12 C -0.166 4.166 13 C -0.021 4.021 14 N -0.341 5.341 15 C 0.287 3.713 16 O -0.475 6.475 17 C -0.130 4.130 18 C -0.080 4.080 19 C -0.100 4.100 20 C -0.124 4.124 21 C -0.081 4.081 22 C 0.394 3.606 23 O -0.422 6.422 24 O -0.304 6.304 25 N -0.165 5.165 26 C -0.059 4.059 27 C 0.003 3.997 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.122 0.878 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.142 0.858 35 H 0.167 0.833 36 H 0.159 0.841 37 H 0.184 0.816 38 H 0.178 0.822 39 H 0.295 0.705 40 H 0.202 0.798 41 H 0.091 0.909 42 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -6.957 -18.033 4.961 19.955 hybrid contribution -0.040 1.835 -0.925 2.056 sum -6.996 -16.197 4.036 18.100 Atomic orbital electron populations 1.70079 1.07320 1.27033 1.50891 1.25857 0.95525 1.02797 0.94759 0.85570 0.79368 0.79756 0.77374 1.18428 1.20953 1.20998 1.21575 0.93255 0.91706 1.50732 0.92187 1.18828 0.93166 0.93650 0.92489 0.99503 1.21535 0.97715 0.94651 1.00672 1.21921 0.99161 0.97651 0.97841 1.22098 0.93992 0.87202 0.98784 1.48524 1.06215 1.08616 1.70756 1.21247 0.81991 0.91994 0.76031 1.90744 1.62344 1.42246 1.52154 1.20826 0.89289 0.93791 1.09087 1.20936 0.96740 0.95860 0.94445 1.21833 0.92422 0.95115 1.00644 1.22219 0.96719 0.96210 0.97228 1.20135 0.91220 1.05829 0.90948 1.20463 0.87911 0.71374 0.80889 1.90881 1.60549 1.47817 1.42927 1.84650 1.32751 1.83792 1.29217 1.67609 1.06105 1.09471 1.33320 1.23111 0.89947 0.94961 0.97917 1.21524 0.97092 0.83407 0.97635 0.93304 0.92677 0.93395 0.87827 0.92718 0.90197 0.85834 0.83285 0.84054 0.81620 0.82231 0.70509 0.79850 0.90853 0.94949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.20 11.39 21.45 0.24 -54.95 16 2 C 0.01 0.55 5.30 84.65 0.45 1.00 16 3 Si 0.95 44.08 29.54 68.60 2.03 46.11 16 4 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 5 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 7 C -0.53 -28.91 8.56 25.60 0.22 -28.69 16 8 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 9 C 0.04 1.83 2.24 -11.61 -0.03 1.81 16 10 H -0.01 -0.74 8.14 -2.38 -0.02 -0.76 16 11 C -0.11 -3.87 5.11 30.62 0.16 -3.72 16 12 C -0.13 -3.16 6.08 30.67 0.19 -2.98 16 13 C 0.10 2.21 6.34 86.36 0.55 2.76 16 14 N -0.61 -21.09 2.98 -819.76 -2.44 -23.53 16 15 C 0.50 16.87 7.69 87.66 0.67 17.55 16 16 O -0.59 -27.72 15.45 -3.03 -0.05 -27.77 16 17 C -0.09 -1.68 4.20 29.10 0.12 -1.56 16 18 C -0.08 -1.75 4.40 -19.69 -0.09 -1.84 16 19 C -0.07 -1.67 9.85 22.45 0.22 -1.45 16 20 C -0.10 -2.50 9.63 22.62 0.22 -2.28 16 21 C 0.05 1.46 6.75 41.88 0.28 1.74 16 22 C 0.55 14.04 8.32 70.43 0.59 14.62 16 23 O -0.53 -15.14 17.11 20.07 0.34 -14.79 16 24 O -0.49 -9.85 13.24 -55.88 -0.74 -10.59 16 25 N -0.45 -12.62 10.12 -184.95 -1.87 -14.49 16 26 C 0.10 2.43 10.86 84.83 0.92 3.36 16 27 C 0.13 5.97 5.38 86.22 0.46 6.43 16 28 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 29 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.12 1.48 5.93 -2.38 -0.01 1.47 16 35 H 0.15 1.55 7.89 -2.39 -0.02 1.54 16 36 H 0.14 1.70 7.65 -2.39 -0.02 1.69 16 37 H 0.17 2.93 8.06 -2.91 -0.02 2.91 16 38 H 0.16 3.39 7.64 -2.91 -0.02 3.37 16 39 H 0.43 3.82 9.11 -74.06 -0.67 3.14 16 40 H 0.18 3.42 8.06 -2.91 -0.02 3.40 16 41 H 0.07 4.26 5.12 -2.39 -0.01 4.25 16 42 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -83.12 354.36 2.83 -80.29 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 0.38 Total: 12.96 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 4.94 Total: 6.76 kcal Atomic # 7 Polarization: -88.91 SS G_CDS: -4.07 Total: -92.98 kcal Atomic # 8 Polarization: -52.70 SS G_CDS: -0.44 Total: -53.15 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -83.12 2.83 -80.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064346.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.595 kcal (2) G-P(sol) polarization free energy of solvation -83.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds