Wall clock time and date at job start Tue Mar 31 2020 12:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99821 * 2 1 4 4 H 1.48499 * 109.47193 * 264.78713 * 3 2 1 5 5 H 1.48504 * 109.47077 * 24.78778 * 3 2 1 6 6 H 1.48496 * 109.47288 * 144.78458 * 3 2 1 7 7 C 1.37874 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00075 * 4.96135 * 7 2 1 9 9 C 1.50696 * 119.99800 * 184.96107 * 7 2 1 10 10 H 1.08999 * 109.50180 * 335.12455 * 9 7 2 11 11 C 1.53043 * 109.52336 * 215.04970 * 9 7 2 12 12 C 1.53044 * 109.53881 * 178.66546 * 11 9 7 13 13 C 1.52756 * 109.38254 * 61.24147 * 12 11 9 14 14 N 1.46923 * 109.01015 * 305.58736 * 13 12 11 15 15 C 1.34780 * 120.63262 * 233.58995 * 14 13 12 16 16 O 1.21279 * 119.99620 * 179.97438 * 15 14 13 17 17 C 1.50695 * 119.99743 * 359.71491 * 15 14 13 18 18 C 1.50703 * 109.46997 * 180.02562 * 17 15 14 19 19 C 1.38624 * 120.32063 * 269.72549 * 18 17 15 20 20 C 1.38583 * 118.48916 * 179.73501 * 19 18 17 21 21 C 1.39346 * 119.05757 * 0.53318 * 20 19 18 22 22 C 1.48069 * 119.72718 * 179.74694 * 21 20 19 23 23 O 1.21426 * 120.00111 * 359.97438 * 22 21 20 24 24 O 1.34678 * 120.00293 * 179.97438 * 22 21 20 25 25 N 1.32744 * 120.54924 * 359.72798 * 21 20 19 26 26 C 1.31508 * 121.63728 * 359.97438 * 25 21 20 27 27 C 1.46926 * 118.73640 * 53.30668 * 14 13 12 28 28 H 0.96994 * 120.00339 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46163 * 298.68633 * 11 9 7 30 30 H 1.09007 * 109.46100 * 58.65895 * 11 9 7 31 31 H 1.09003 * 109.49291 * 181.31653 * 12 11 9 32 32 H 1.08993 * 109.49899 * 301.41152 * 12 11 9 33 33 H 1.09002 * 109.50926 * 185.70554 * 13 12 11 34 34 H 1.09000 * 109.43381 * 65.42474 * 13 12 11 35 35 H 1.09006 * 109.46885 * 300.00074 * 17 15 14 36 36 H 1.08994 * 109.47379 * 60.00113 * 17 15 14 37 37 H 1.08000 * 120.75044 * 359.97438 * 19 18 17 38 38 H 1.08005 * 120.47236 * 180.25798 * 20 19 18 39 39 H 0.96694 * 117.00670 * 179.97438 * 24 22 21 40 40 H 1.08002 * 119.54460 * 180.02562 * 26 25 21 41 41 H 1.09002 * 109.58825 * 66.43856 * 27 14 13 42 42 H 1.09011 * 109.58921 * 186.71567 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6068 1.9829 -1.3943 5 1 1.3958 2.6820 0.5870 6 1 3.4872 1.4746 0.8073 7 6 2.0046 -1.1940 0.0005 8 1 1.4677 -2.1276 -0.0799 9 6 3.5073 -1.1963 0.1134 10 1 3.9010 -0.2471 -0.2501 11 6 4.0813 -2.3415 -0.7241 12 6 5.6092 -2.3238 -0.6364 13 6 6.0359 -2.5258 0.8163 14 7 5.3714 -1.5188 1.6548 15 6 6.0894 -0.7249 2.4738 16 8 5.5290 0.1029 3.1605 17 6 7.5879 -0.8698 2.5404 18 6 8.1457 0.1267 3.5237 19 6 8.5268 1.3903 3.0996 20 6 9.0297 2.2785 4.0370 21 6 9.1448 1.8689 5.3639 22 6 9.6855 2.8039 6.3767 23 8 10.0270 3.9223 6.0495 24 8 9.7987 2.4140 7.6608 25 7 8.7733 0.6475 5.7276 26 6 8.2875 -0.2129 4.8598 27 6 3.9098 -1.3894 1.5788 28 1 -0.4850 0.8400 -0.0004 29 1 3.7068 -3.2921 -0.3446 30 1 3.7760 -2.2197 -1.7634 31 1 6.0181 -3.1252 -1.2518 32 1 5.9829 -1.3640 -0.9928 33 1 7.1171 -2.4128 0.8972 34 1 5.7452 -3.5238 1.1443 35 1 7.8412 -1.8795 2.8636 36 1 8.0149 -0.6860 1.5546 37 1 8.4302 1.6772 2.0629 38 1 9.3325 3.2725 3.7424 39 1 10.1574 3.0590 8.2855 40 1 7.9953 -1.1979 5.1929 41 1 3.4421 -2.2928 1.9703 42 1 3.5882 -0.5282 2.1647 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601064347.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:55 Heat of formation + Delta-G solvation = -95.527898 kcal Electronic energy + Delta-G solvation = -26169.576995 eV Core-core repulsion = 22307.255869 eV Total energy + Delta-G solvation = -3862.321126 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.09529 -40.09479 -39.37685 -37.08017 -36.40366 -34.02336 -33.39212 -32.31507 -31.95867 -30.67616 -28.89015 -25.44298 -25.21455 -24.11331 -23.70136 -21.95847 -21.70542 -19.83308 -18.71155 -18.56599 -17.84753 -17.18186 -16.75690 -16.74153 -16.04058 -15.93212 -15.15939 -14.98413 -14.80359 -14.27350 -13.99483 -13.95382 -13.56983 -13.53334 -13.44964 -12.96323 -12.91492 -12.59714 -12.43129 -12.23216 -11.94232 -11.84289 -11.31874 -11.18056 -11.13412 -10.79208 -10.62868 -10.19376 -10.14368 -9.88366 -9.78823 -9.76888 -9.49941 -9.30057 -9.09555 -8.63306 -8.15946 -6.16500 -4.17818 0.20264 0.96109 2.11192 2.57912 2.82251 3.24060 3.28643 3.37025 3.42940 3.59493 3.96583 4.31318 4.37532 4.50692 4.60629 4.65920 4.75621 4.91076 5.03151 5.14424 5.16174 5.25727 5.28964 5.41793 5.44933 5.69855 5.74701 5.84868 5.91374 6.07132 6.09947 6.19190 6.23975 6.34395 6.53522 6.59601 6.71681 6.81064 7.19278 7.28779 7.34017 7.66404 7.68560 7.77347 8.39112 8.46581 8.88637 9.46652 10.95998 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016970 B = 0.003201 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.550231 B = 8745.624068 C = 9707.381483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.076 3.924 3 Si 0.872 3.128 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.260 1.260 7 C -0.516 4.516 8 H 0.075 0.925 9 C 0.006 3.994 10 H 0.034 0.966 11 C -0.106 4.106 12 C -0.139 4.139 13 C 0.108 3.892 14 N -0.607 5.607 15 C 0.508 3.492 16 O -0.539 6.539 17 C -0.106 4.106 18 C -0.073 4.073 19 C -0.072 4.072 20 C -0.099 4.099 21 C 0.077 3.923 22 C 0.546 3.454 23 O -0.510 6.510 24 O -0.492 6.492 25 N -0.432 5.432 26 C 0.111 3.889 27 C 0.114 3.886 28 H 0.266 0.734 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.146 0.854 38 H 0.151 0.849 39 H 0.412 0.588 40 H 0.165 0.835 41 H 0.062 0.938 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.892 -2.392 5.965 22.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.127 4.127 3 Si 0.699 3.301 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.554 4.554 8 H 0.094 0.906 9 C -0.013 4.013 10 H 0.052 0.948 11 C -0.143 4.143 12 C -0.177 4.177 13 C -0.015 4.015 14 N -0.340 5.340 15 C 0.294 3.706 16 O -0.416 6.416 17 C -0.147 4.147 18 C -0.076 4.076 19 C -0.097 4.097 20 C -0.119 4.119 21 C -0.059 4.059 22 C 0.389 3.611 23 O -0.398 6.398 24 O -0.302 6.302 25 N -0.142 5.142 26 C -0.050 4.050 27 C -0.007 4.007 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.164 0.836 38 H 0.168 0.832 39 H 0.270 0.730 40 H 0.182 0.818 41 H 0.080 0.920 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 21.437 -2.016 6.880 22.605 hybrid contribution 0.375 1.536 -0.591 1.688 sum 21.813 -0.481 6.289 22.706 Atomic orbital electron populations 1.69894 1.06357 1.27249 1.49620 1.25077 0.94691 0.99046 0.93886 0.86917 0.80741 0.83722 0.78682 1.20245 1.21464 1.18469 1.20881 0.88645 0.94674 1.51173 0.90645 1.19461 0.96929 0.94729 0.90229 0.94806 1.21587 0.91652 1.00066 1.01039 1.21941 0.99161 1.01575 0.95017 1.21639 0.96461 0.91983 0.91453 1.48522 1.09385 1.35500 1.40544 1.20249 0.88403 0.81507 0.80427 1.90738 1.72254 1.35428 1.43204 1.20779 0.94158 0.99769 0.99960 1.20737 0.95683 0.95346 0.95813 1.21494 0.95362 0.92141 1.00719 1.22036 0.96830 1.01235 0.91801 1.19879 1.02945 0.92086 0.90972 1.20497 0.74204 0.84818 0.81599 1.90903 1.46649 1.20846 1.81364 1.84691 1.77557 1.49031 1.18924 1.67631 1.07538 1.01534 1.37537 1.22696 0.94876 0.99068 0.88319 1.22464 0.75014 1.02113 1.01115 0.92456 0.92671 0.92143 0.91585 0.92172 0.90765 0.91378 0.87231 0.87395 0.83604 0.83162 0.72992 0.81766 0.91994 0.89990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.84 13.96 55.43 0.77 -26.06 16 2 C 0.08 2.14 5.47 -17.82 -0.10 2.05 16 3 Si 0.87 21.74 26.99 -169.99 -4.59 17.15 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.26 -6.51 6.82 56.52 0.39 -6.13 16 7 C -0.52 -13.74 8.87 -34.44 -0.31 -14.05 16 8 H 0.08 2.17 8.06 -52.49 -0.42 1.74 16 9 C 0.01 0.14 1.91 -91.65 -0.18 -0.04 16 10 H 0.03 0.78 5.29 -51.93 -0.27 0.50 16 11 C -0.11 -1.85 5.15 -26.69 -0.14 -1.98 16 12 C -0.14 -1.79 6.06 -26.83 -0.16 -1.95 16 13 C 0.11 1.25 6.31 -3.94 -0.02 1.22 16 14 N -0.61 -9.70 2.98 -173.03 -0.52 -10.21 16 15 C 0.51 7.97 7.69 -10.99 -0.08 7.89 16 16 O -0.54 -11.07 15.45 5.56 0.09 -10.98 16 17 C -0.11 -1.05 4.20 -29.04 -0.12 -1.17 16 18 C -0.07 -0.82 4.40 -104.35 -0.46 -1.28 16 19 C -0.07 -0.78 9.85 -39.31 -0.39 -1.16 16 20 C -0.10 -1.12 9.63 -39.04 -0.38 -1.50 16 21 C 0.08 0.98 6.75 -83.03 -0.56 0.42 16 22 C 0.55 6.58 8.32 34.76 0.29 6.87 16 23 O -0.51 -6.90 17.11 -19.21 -0.33 -7.23 16 24 O -0.49 -4.73 13.24 -40.43 -0.54 -5.26 16 25 N -0.43 -5.70 10.12 -9.81 -0.10 -5.80 16 26 C 0.11 1.29 10.86 -17.56 -0.19 1.10 16 27 C 0.11 2.32 5.70 -3.71 -0.02 2.30 16 28 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.59 5.93 -51.93 -0.31 0.28 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.11 0.75 7.90 -51.93 -0.41 0.34 16 36 H 0.11 0.81 7.63 -51.93 -0.40 0.41 16 37 H 0.15 1.28 8.06 -52.49 -0.42 0.85 16 38 H 0.15 1.49 7.64 -52.48 -0.40 1.09 16 39 H 0.41 1.74 9.11 45.56 0.42 2.16 16 40 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 41 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.08 1.94 7.01 -51.92 -0.36 1.58 16 LS Contribution 353.91 15.07 5.33 5.33 Total: -1.00 -36.08 353.91 -7.38 -43.47 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -4.70 Total: 0.88 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -2.81 Total: -1.29 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 0.16 Total: -42.08 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.78 Total: -23.47 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.59 Total: 17.15 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -36.08 -7.38 -43.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064347.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.062 kcal (2) G-P(sol) polarization free energy of solvation -36.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds