Wall clock time and date at job start Tue Mar 31 2020 12:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99821 * 2 1 4 4 H 1.48499 * 109.47193 * 264.78713 * 3 2 1 5 5 H 1.48504 * 109.47077 * 24.78778 * 3 2 1 6 6 H 1.48496 * 109.47288 * 144.78458 * 3 2 1 7 7 C 1.37874 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00075 * 4.96135 * 7 2 1 9 9 C 1.50696 * 119.99800 * 184.96107 * 7 2 1 10 10 H 1.08999 * 109.50180 * 335.12455 * 9 7 2 11 11 C 1.53043 * 109.52336 * 215.04970 * 9 7 2 12 12 C 1.53044 * 109.53881 * 178.66546 * 11 9 7 13 13 C 1.52756 * 109.38254 * 61.24147 * 12 11 9 14 14 N 1.46923 * 109.01015 * 305.58736 * 13 12 11 15 15 C 1.34780 * 120.63262 * 233.58995 * 14 13 12 16 16 O 1.21279 * 119.99620 * 179.97438 * 15 14 13 17 17 C 1.50695 * 119.99743 * 359.71491 * 15 14 13 18 18 C 1.50703 * 109.46997 * 180.02562 * 17 15 14 19 19 C 1.38624 * 120.32063 * 269.72549 * 18 17 15 20 20 C 1.38583 * 118.48916 * 179.73501 * 19 18 17 21 21 C 1.39346 * 119.05757 * 0.53318 * 20 19 18 22 22 C 1.48069 * 119.72718 * 179.74694 * 21 20 19 23 23 O 1.21426 * 120.00111 * 359.97438 * 22 21 20 24 24 O 1.34678 * 120.00293 * 179.97438 * 22 21 20 25 25 N 1.32744 * 120.54924 * 359.72798 * 21 20 19 26 26 C 1.31508 * 121.63728 * 359.97438 * 25 21 20 27 27 C 1.46926 * 118.73640 * 53.30668 * 14 13 12 28 28 H 0.96994 * 120.00339 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46163 * 298.68633 * 11 9 7 30 30 H 1.09007 * 109.46100 * 58.65895 * 11 9 7 31 31 H 1.09003 * 109.49291 * 181.31653 * 12 11 9 32 32 H 1.08993 * 109.49899 * 301.41152 * 12 11 9 33 33 H 1.09002 * 109.50926 * 185.70554 * 13 12 11 34 34 H 1.09000 * 109.43381 * 65.42474 * 13 12 11 35 35 H 1.09006 * 109.46885 * 300.00074 * 17 15 14 36 36 H 1.08994 * 109.47379 * 60.00113 * 17 15 14 37 37 H 1.08000 * 120.75044 * 359.97438 * 19 18 17 38 38 H 1.08005 * 120.47236 * 180.25798 * 20 19 18 39 39 H 0.96694 * 117.00670 * 179.97438 * 24 22 21 40 40 H 1.08002 * 119.54460 * 180.02562 * 26 25 21 41 41 H 1.09002 * 109.58825 * 66.43856 * 27 14 13 42 42 H 1.09011 * 109.58921 * 186.71567 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6068 1.9829 -1.3943 5 1 1.3958 2.6820 0.5870 6 1 3.4872 1.4746 0.8073 7 6 2.0046 -1.1940 0.0005 8 1 1.4677 -2.1276 -0.0799 9 6 3.5073 -1.1963 0.1134 10 1 3.9010 -0.2471 -0.2501 11 6 4.0813 -2.3415 -0.7241 12 6 5.6092 -2.3238 -0.6364 13 6 6.0359 -2.5258 0.8163 14 7 5.3714 -1.5188 1.6548 15 6 6.0894 -0.7249 2.4738 16 8 5.5290 0.1029 3.1605 17 6 7.5879 -0.8698 2.5404 18 6 8.1457 0.1267 3.5237 19 6 8.5268 1.3903 3.0996 20 6 9.0297 2.2785 4.0370 21 6 9.1448 1.8689 5.3639 22 6 9.6855 2.8039 6.3767 23 8 10.0270 3.9223 6.0495 24 8 9.7987 2.4140 7.6608 25 7 8.7733 0.6475 5.7276 26 6 8.2875 -0.2129 4.8598 27 6 3.9098 -1.3894 1.5788 28 1 -0.4850 0.8400 -0.0004 29 1 3.7068 -3.2921 -0.3446 30 1 3.7760 -2.2197 -1.7634 31 1 6.0181 -3.1252 -1.2518 32 1 5.9829 -1.3640 -0.9928 33 1 7.1171 -2.4128 0.8972 34 1 5.7452 -3.5238 1.1443 35 1 7.8412 -1.8795 2.8636 36 1 8.0149 -0.6860 1.5546 37 1 8.4302 1.6772 2.0629 38 1 9.3325 3.2725 3.7424 39 1 10.1574 3.0590 8.2855 40 1 7.9953 -1.1979 5.1929 41 1 3.4421 -2.2928 1.9703 42 1 3.5882 -0.5282 2.1647 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601064347.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:55 Heat of formation + Delta-G solvation = -121.945291 kcal Electronic energy + Delta-G solvation = -26170.722539 eV Core-core repulsion = 22307.255869 eV Total energy + Delta-G solvation = -3863.466670 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.96929 -41.17477 -40.37489 -38.42512 -37.24925 -35.32489 -34.77378 -33.56732 -33.11628 -32.14225 -29.85959 -27.10391 -26.40756 -25.10444 -24.64152 -23.30714 -22.60243 -21.27261 -19.90980 -19.50723 -18.96529 -18.70288 -18.12233 -17.59224 -17.02583 -16.90369 -16.54770 -16.10369 -15.91059 -15.61919 -15.31854 -15.10468 -14.84932 -14.51731 -14.39401 -14.26298 -14.22963 -13.93295 -13.73639 -13.23690 -13.02170 -12.88149 -12.69438 -12.69020 -12.59462 -12.09546 -11.98792 -11.70932 -11.60434 -11.27795 -11.06099 -11.05635 -10.76180 -10.71747 -10.71030 -10.15850 -9.50411 -8.36072 -6.38220 -0.66333 0.14712 1.22807 1.24196 1.31721 1.39906 1.68487 1.81202 2.14164 2.27534 2.69384 3.03175 3.17395 3.50746 3.71159 3.76317 3.85097 3.95530 4.09607 4.17723 4.22134 4.27565 4.45068 4.55301 4.60321 4.65394 4.66275 4.77569 4.86193 4.91190 5.01086 5.04968 5.07797 5.17653 5.30696 5.35600 5.45478 5.45707 5.62695 5.68474 5.76094 6.28521 6.54978 6.60049 6.71597 6.91634 7.26259 7.28548 8.80513 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016970 B = 0.003201 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.550231 B = 8745.624068 C = 9707.381483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.019 3.981 3 Si 0.934 3.066 4 H -0.259 1.259 5 H -0.294 1.294 6 H -0.264 1.264 7 C -0.511 4.511 8 H 0.041 0.959 9 C 0.005 3.995 10 H 0.024 0.976 11 C -0.105 4.105 12 C -0.131 4.131 13 C 0.101 3.899 14 N -0.609 5.609 15 C 0.502 3.498 16 O -0.597 6.597 17 C -0.091 4.091 18 C -0.079 4.079 19 C -0.075 4.075 20 C -0.104 4.104 21 C 0.055 3.945 22 C 0.549 3.451 23 O -0.532 6.532 24 O -0.492 6.492 25 N -0.455 5.455 26 C 0.102 3.898 27 C 0.126 3.874 28 H 0.265 0.735 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.105 0.895 32 H 0.061 0.939 33 H 0.128 0.872 34 H 0.083 0.917 35 H 0.152 0.848 36 H 0.146 0.854 37 H 0.169 0.831 38 H 0.159 0.841 39 H 0.433 0.567 40 H 0.186 0.814 41 H 0.057 0.943 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.651 -3.617 5.100 26.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.179 4.179 3 Si 0.760 3.240 4 H -0.184 1.184 5 H -0.221 1.221 6 H -0.188 1.188 7 C -0.549 4.549 8 H 0.060 0.940 9 C -0.015 4.015 10 H 0.042 0.958 11 C -0.143 4.143 12 C -0.169 4.169 13 C -0.019 4.019 14 N -0.341 5.341 15 C 0.291 3.709 16 O -0.479 6.479 17 C -0.131 4.131 18 C -0.081 4.081 19 C -0.100 4.100 20 C -0.125 4.125 21 C -0.081 4.081 22 C 0.392 3.608 23 O -0.422 6.422 24 O -0.304 6.304 25 N -0.166 5.166 26 C -0.059 4.059 27 C 0.003 3.997 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.124 0.876 32 H 0.079 0.921 33 H 0.146 0.854 34 H 0.102 0.898 35 H 0.170 0.830 36 H 0.163 0.837 37 H 0.186 0.814 38 H 0.177 0.823 39 H 0.295 0.705 40 H 0.202 0.798 41 H 0.075 0.925 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 25.254 -3.274 6.009 26.165 hybrid contribution -0.830 1.808 -0.269 2.007 sum 24.425 -1.466 5.740 25.133 Atomic orbital electron populations 1.70029 1.07967 1.27927 1.52501 1.25832 0.95289 1.02425 0.94353 0.85937 0.79039 0.79829 0.79235 1.18409 1.22098 1.18818 1.21268 0.91634 0.93019 1.49010 0.94038 1.19431 0.93656 0.96274 0.92146 0.95806 1.21496 0.95724 0.97807 0.99240 1.21908 0.94792 1.03292 0.96897 1.22063 0.99105 0.91325 0.89449 1.48505 1.07299 1.36731 1.41560 1.21285 0.90789 0.79924 0.78877 1.90725 1.73940 1.37805 1.45402 1.20850 0.88812 1.01679 1.01745 1.20942 0.95432 0.95830 0.95943 1.21854 0.94512 0.91965 1.01694 1.22228 0.96739 1.01894 0.91602 1.20128 1.03750 0.92380 0.91795 1.20505 0.73704 0.84397 0.82157 1.90884 1.47860 1.21637 1.81850 1.84647 1.77325 1.49946 1.18530 1.67615 1.08512 1.02009 1.38482 1.23143 0.94339 0.99713 0.88671 1.21774 0.78926 1.00062 0.98970 0.92565 0.92710 0.93190 0.87633 0.92059 0.85397 0.89825 0.82999 0.83662 0.81395 0.82315 0.70505 0.79758 0.92494 0.94150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.11 13.96 21.45 0.30 -58.81 16 2 C 0.02 1.10 5.47 84.65 0.46 1.56 16 3 Si 0.93 46.27 26.99 68.60 1.85 48.13 16 4 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.29 -14.74 7.11 99.48 0.71 -14.03 16 6 H -0.26 -13.08 6.82 99.48 0.68 -12.40 16 7 C -0.51 -28.18 8.87 25.60 0.23 -27.96 16 8 H 0.04 2.51 8.06 -2.91 -0.02 2.48 16 9 C 0.00 0.20 1.91 -11.46 -0.02 0.18 16 10 H 0.02 1.08 5.29 -2.39 -0.01 1.07 16 11 C -0.10 -3.47 5.15 30.62 0.16 -3.31 16 12 C -0.13 -2.73 6.06 30.53 0.19 -2.54 16 13 C 0.10 1.76 6.31 86.22 0.54 2.31 16 14 N -0.61 -17.60 2.98 -819.74 -2.44 -20.04 16 15 C 0.50 14.20 7.69 87.65 0.67 14.88 16 16 O -0.60 -24.11 15.45 -3.03 -0.05 -24.15 16 17 C -0.09 -1.30 4.20 29.10 0.12 -1.17 16 18 C -0.08 -1.50 4.40 -19.69 -0.09 -1.58 16 19 C -0.07 -1.42 9.85 22.44 0.22 -1.20 16 20 C -0.10 -2.24 9.63 22.62 0.22 -2.02 16 21 C 0.05 1.35 6.75 41.88 0.28 1.63 16 22 C 0.55 13.00 8.32 70.43 0.59 13.58 16 23 O -0.53 -14.27 17.11 20.08 0.34 -13.93 16 24 O -0.49 -9.07 13.24 -55.87 -0.74 -9.81 16 25 N -0.46 -11.49 10.12 -184.95 -1.87 -13.36 16 26 C 0.10 2.13 10.86 84.82 0.92 3.05 16 27 C 0.13 5.13 5.70 86.36 0.49 5.62 16 28 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 29 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 31 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.13 0.95 5.93 -2.39 -0.01 0.94 16 34 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.15 0.95 7.90 -2.38 -0.02 0.93 16 36 H 0.15 1.08 7.63 -2.39 -0.02 1.06 16 37 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 38 H 0.16 2.99 7.64 -2.91 -0.02 2.97 16 39 H 0.43 3.23 9.11 -74.06 -0.67 2.55 16 40 H 0.19 2.85 8.06 -2.91 -0.02 2.82 16 41 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.04 1.97 7.01 -2.38 -0.02 1.95 16 Total: -1.00 -85.62 353.91 2.74 -82.89 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: 0.36 Total: 6.05 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: 4.99 Total: 3.04 kcal Atomic # 7 Polarization: -88.20 SS G_CDS: -4.01 Total: -92.22 kcal Atomic # 8 Polarization: -47.45 SS G_CDS: -0.44 Total: -47.89 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 1.85 Total: 48.13 kcal Total: -85.62 2.74 -82.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064347.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.060 kcal (2) G-P(sol) polarization free energy of solvation -85.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds