Wall clock time and date at job start Tue Mar 31 2020 12:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86808 * 120.00045 * 2 1 4 4 H 1.48497 * 109.46808 * 269.99941 * 3 2 1 5 5 H 1.48502 * 109.46859 * 29.99710 * 3 2 1 6 6 H 1.48503 * 109.46817 * 149.99704 * 3 2 1 7 7 C 1.37874 * 120.00171 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00464 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99761 * 0.02562 * 7 2 1 10 10 C 1.53042 * 109.45864 * 179.97438 * 9 7 2 11 11 C 1.53195 * 109.31046 * 178.62817 * 10 9 7 12 12 N 1.46925 * 108.77662 * 54.63235 * 11 10 9 13 13 C 1.34777 * 120.62933 * 126.37171 * 12 11 10 14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 11 15 15 C 1.50702 * 119.99928 * 180.27723 * 13 12 11 16 16 C 1.50700 * 109.46869 * 179.72354 * 15 13 12 17 17 C 1.38625 * 120.31595 * 269.71600 * 16 15 13 18 18 C 1.38589 * 118.48595 * 179.80497 * 17 16 15 19 19 C 1.39352 * 119.05485 * 0.45419 * 18 17 16 20 20 C 1.48071 * 119.72635 * 179.77186 * 19 18 17 21 21 O 1.21431 * 120.00062 * 0.02562 * 20 19 18 22 22 O 1.34674 * 120.00407 * 180.02562 * 20 19 18 23 23 N 1.32742 * 120.54819 * 359.78886 * 19 18 17 24 24 C 1.31500 * 121.64216 * 359.97438 * 23 19 18 25 25 C 1.46931 * 118.73924 * 306.64212 * 12 11 10 26 26 C 1.52760 * 109.00543 * 53.31068 * 25 12 11 27 27 H 0.97004 * 119.99633 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.45607 * 299.96933 * 9 7 2 29 29 H 1.08994 * 109.49700 * 58.67777 * 10 9 7 30 30 H 1.08997 * 109.52427 * 298.59270 * 10 9 7 31 31 H 1.09005 * 109.58240 * 294.84926 * 11 10 9 32 32 H 1.08995 * 109.70318 * 174.49170 * 11 10 9 33 33 H 1.09004 * 109.46965 * 299.72211 * 15 13 12 34 34 H 1.08994 * 109.46990 * 59.72065 * 15 13 12 35 35 H 1.07996 * 120.76171 * 0.03230 * 17 16 15 36 36 H 1.08000 * 120.47593 * 180.22251 * 18 17 16 37 37 H 0.96699 * 117.00578 * 179.97438 * 22 20 19 38 38 H 1.07996 * 119.54878 * 179.97438 * 24 23 19 39 39 H 1.08997 * 109.58191 * 173.14261 * 25 12 11 40 40 H 1.09000 * 109.58404 * 293.56973 * 25 12 11 41 41 H 1.09004 * 109.56227 * 185.55021 * 26 25 12 42 42 H 1.08994 * 109.36282 * 65.49817 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2458 -3.6622 0.0005 11 6 1.4767 -4.9866 0.0351 12 7 0.5224 -5.0087 -1.0818 13 6 0.5122 -6.0344 -1.9560 14 8 1.2960 -6.9506 -1.8251 15 6 -0.4686 -6.0395 -3.1002 16 6 -0.2695 -7.2837 -3.9269 17 6 0.6118 -7.2793 -4.9969 18 6 0.7687 -8.4457 -5.7288 19 6 0.0318 -9.5732 -5.3715 20 6 0.1841 -10.8257 -6.1464 21 8 0.9489 -10.8676 -7.0886 22 8 -0.5257 -11.9185 -5.8062 23 7 -0.8057 -9.5335 -4.3424 24 6 -0.9700 -8.4416 -3.6283 25 6 -0.4165 -3.8884 -1.2311 26 6 0.3701 -2.5790 -1.2484 27 1 -0.4850 0.8401 -0.0004 28 1 0.6245 -2.5567 0.8907 29 1 2.8881 -3.5915 0.8782 30 1 2.8562 -3.6195 -0.9015 31 1 0.9370 -5.0712 0.9785 32 1 2.1735 -5.8189 -0.0631 33 1 -1.4852 -6.0231 -2.7074 34 1 -0.3053 -5.1597 -3.7226 35 1 1.1664 -6.3884 -5.2521 36 1 1.4495 -8.4792 -6.5666 37 1 -0.3929 -12.7126 -6.3419 38 1 -1.6608 -8.4470 -2.7982 39 1 -0.9666 -3.9949 -2.1660 40 1 -1.1135 -3.8817 -0.3932 41 1 -0.3224 -1.7373 -1.2596 42 1 0.9978 -2.5462 -2.1389 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601064382.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:46 Heat of formation + Delta-G solvation = -96.763292 kcal Electronic energy + Delta-G solvation = -25821.185543 eV Core-core repulsion = 21958.810846 eV Total energy + Delta-G solvation = -3862.374697 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.09021 -40.08577 -39.35334 -36.95512 -36.41191 -33.97203 -33.59494 -32.32831 -31.40658 -30.26791 -28.76172 -26.27609 -24.68817 -23.91804 -22.98109 -22.38892 -21.62863 -19.96972 -18.69048 -18.39336 -17.84379 -17.13741 -16.73753 -16.27057 -16.04552 -15.86112 -15.11563 -15.01949 -14.78069 -14.59511 -13.98070 -13.57677 -13.43647 -13.36537 -13.22631 -13.01643 -12.70013 -12.63316 -12.24901 -11.92078 -11.85169 -11.63630 -11.39266 -11.18557 -11.00266 -10.71570 -10.47625 -10.24007 -10.14537 -9.87739 -9.79662 -9.64858 -9.27850 -9.26324 -9.00662 -8.46290 -8.13252 -6.11066 -4.17088 0.21132 0.97138 2.11239 2.57536 2.79610 3.22911 3.26823 3.30572 3.33926 3.60590 3.97436 4.34569 4.35369 4.53920 4.62982 4.71460 4.78670 4.94044 5.18432 5.22022 5.32863 5.43131 5.49831 5.70701 5.71629 5.84561 5.88603 5.96824 6.06298 6.09143 6.18196 6.25527 6.35100 6.55579 6.78552 6.93355 7.02599 7.16467 7.34092 7.57616 7.68320 7.78030 7.82433 7.94895 8.31780 8.38616 8.86356 9.48555 10.94489 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.031769 B = 0.002342 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.161216 B =11952.184540 C =12108.697610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.512 4.512 8 H 0.055 0.945 9 C 0.048 3.952 10 C -0.123 4.123 11 C 0.112 3.888 12 N -0.597 5.597 13 C 0.513 3.487 14 O -0.552 6.552 15 C -0.106 4.106 16 C -0.071 4.071 17 C -0.071 4.071 18 C -0.099 4.099 19 C 0.076 3.924 20 C 0.546 3.454 21 O -0.510 6.510 22 O -0.493 6.493 23 N -0.432 5.432 24 C 0.110 3.890 25 C 0.101 3.899 26 C -0.126 4.126 27 H 0.261 0.739 28 H 0.028 0.972 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.412 0.588 38 H 0.165 0.835 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.106 0.894 42 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.741 -14.821 -9.276 18.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.550 4.550 8 H 0.073 0.927 9 C 0.030 3.970 10 C -0.162 4.162 11 C -0.010 4.010 12 N -0.330 5.330 13 C 0.300 3.700 14 O -0.432 6.432 15 C -0.147 4.147 16 C -0.073 4.073 17 C -0.097 4.097 18 C -0.119 4.119 19 C -0.060 4.060 20 C 0.389 3.611 21 O -0.398 6.398 22 O -0.302 6.302 23 N -0.143 5.143 24 C -0.050 4.050 25 C -0.021 4.021 26 C -0.164 4.164 27 H 0.071 0.929 28 H 0.046 0.954 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.165 0.835 36 H 0.168 0.832 37 H 0.270 0.730 38 H 0.182 0.818 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.124 0.876 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.788 -15.616 -9.025 18.661 hybrid contribution 0.989 1.373 -0.507 1.767 sum -3.798 -14.243 -9.533 17.555 Atomic orbital electron populations 1.69823 1.05839 1.26538 1.50911 1.24954 0.94886 0.99080 0.95024 0.86615 0.79942 0.83472 0.78109 1.20723 1.21218 1.19952 1.21200 0.92972 0.90536 1.50327 0.92695 1.18640 0.92651 0.91769 0.93976 1.22009 0.98927 0.94156 1.01063 1.21717 0.91741 0.99760 0.87796 1.48253 1.36168 1.20759 1.27792 1.20212 0.84549 0.82218 0.82992 1.90692 1.41380 1.36245 1.74838 1.20758 1.01298 0.96536 0.96064 1.20756 0.95438 0.96304 0.94851 1.21514 0.95996 0.98505 0.93664 1.22039 0.98022 0.91692 1.00152 1.19874 0.98444 0.91756 0.95944 1.20511 0.76453 0.83244 0.80908 1.90904 1.36243 1.84428 1.28233 1.84693 1.63601 1.22334 1.59605 1.67623 1.14918 1.28133 1.03619 1.22699 0.97926 0.86871 0.97551 1.22017 0.91726 0.87526 1.00818 1.21963 1.00164 0.94628 0.99674 0.92930 0.95399 0.92076 0.92965 0.92092 0.90327 0.87104 0.87017 0.83501 0.83180 0.73021 0.81783 0.91372 0.91662 0.87595 0.94236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.44 11.30 55.43 0.63 -22.82 16 2 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 3 Si 0.89 20.20 29.54 -169.99 -5.02 15.18 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 7 C -0.51 -13.09 8.56 -34.44 -0.29 -13.38 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 9 C 0.05 1.08 2.07 -91.73 -0.19 0.89 16 10 C -0.12 -2.38 5.30 -26.61 -0.14 -2.52 16 11 C 0.11 1.90 6.44 -3.71 -0.02 1.88 16 12 N -0.60 -9.48 2.98 -173.03 -0.52 -10.00 16 13 C 0.51 7.68 7.69 -10.98 -0.08 7.59 16 14 O -0.55 -10.10 15.45 5.55 0.09 -10.01 16 15 C -0.11 -1.11 4.20 -29.03 -0.12 -1.23 16 16 C -0.07 -0.79 4.40 -104.35 -0.46 -1.24 16 17 C -0.07 -0.75 9.85 -39.31 -0.39 -1.14 16 18 C -0.10 -1.08 9.63 -39.04 -0.38 -1.46 16 19 C 0.08 0.93 6.75 -83.03 -0.56 0.37 16 20 C 0.55 6.34 8.32 34.76 0.29 6.63 16 21 O -0.51 -6.68 17.11 -19.21 -0.33 -7.01 16 22 O -0.49 -4.53 13.24 -40.42 -0.54 -5.07 16 23 N -0.43 -5.54 10.12 -9.81 -0.10 -5.64 16 24 C 0.11 1.25 10.86 -17.57 -0.19 1.06 16 25 C 0.10 1.56 6.32 -3.93 -0.02 1.54 16 26 C -0.13 -2.53 5.14 -26.83 -0.14 -2.67 16 27 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 28 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.08 1.35 7.00 -51.93 -0.36 0.99 16 33 H 0.11 0.89 7.91 -51.93 -0.41 0.47 16 34 H 0.11 1.01 7.63 -51.93 -0.40 0.61 16 35 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.15 1.41 7.64 -52.49 -0.40 1.01 16 37 H 0.41 1.59 9.11 45.56 0.42 2.00 16 38 H 0.17 1.49 8.06 -52.49 -0.42 1.06 16 39 H 0.07 0.83 5.93 -51.93 -0.31 0.52 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.11 2.40 6.03 -51.93 -0.31 2.09 16 42 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 354.15 15.07 5.34 5.34 Total: -1.00 -32.13 354.15 -7.95 -40.08 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -4.70 Total: 2.14 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -2.80 Total: -2.19 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.01 Total: -38.46 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.78 Total: -22.09 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.13 -7.95 -40.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064382.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.684 kcal (2) G-P(sol) polarization free energy of solvation -32.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds