Wall clock time and date at job start Tue Mar 31 2020 12:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86808 * 120.00045 * 2 1 4 4 H 1.48497 * 109.46808 * 269.99941 * 3 2 1 5 5 H 1.48502 * 109.46859 * 29.99710 * 3 2 1 6 6 H 1.48503 * 109.46817 * 149.99704 * 3 2 1 7 7 C 1.37874 * 120.00171 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00464 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99761 * 0.02562 * 7 2 1 10 10 C 1.53042 * 109.45864 * 179.97438 * 9 7 2 11 11 C 1.53195 * 109.31046 * 178.62817 * 10 9 7 12 12 N 1.46925 * 108.77662 * 54.63235 * 11 10 9 13 13 C 1.34777 * 120.62933 * 126.37171 * 12 11 10 14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 11 15 15 C 1.50702 * 119.99928 * 180.27723 * 13 12 11 16 16 C 1.50700 * 109.46869 * 179.72354 * 15 13 12 17 17 C 1.38625 * 120.31595 * 269.71600 * 16 15 13 18 18 C 1.38589 * 118.48595 * 179.80497 * 17 16 15 19 19 C 1.39352 * 119.05485 * 0.45419 * 18 17 16 20 20 C 1.48071 * 119.72635 * 179.77186 * 19 18 17 21 21 O 1.21431 * 120.00062 * 0.02562 * 20 19 18 22 22 O 1.34674 * 120.00407 * 180.02562 * 20 19 18 23 23 N 1.32742 * 120.54819 * 359.78886 * 19 18 17 24 24 C 1.31500 * 121.64216 * 359.97438 * 23 19 18 25 25 C 1.46931 * 118.73924 * 306.64212 * 12 11 10 26 26 C 1.52760 * 109.00543 * 53.31068 * 25 12 11 27 27 H 0.97004 * 119.99633 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.45607 * 299.96933 * 9 7 2 29 29 H 1.08994 * 109.49700 * 58.67777 * 10 9 7 30 30 H 1.08997 * 109.52427 * 298.59270 * 10 9 7 31 31 H 1.09005 * 109.58240 * 294.84926 * 11 10 9 32 32 H 1.08995 * 109.70318 * 174.49170 * 11 10 9 33 33 H 1.09004 * 109.46965 * 299.72211 * 15 13 12 34 34 H 1.08994 * 109.46990 * 59.72065 * 15 13 12 35 35 H 1.07996 * 120.76171 * 0.03230 * 17 16 15 36 36 H 1.08000 * 120.47593 * 180.22251 * 18 17 16 37 37 H 0.96699 * 117.00578 * 179.97438 * 22 20 19 38 38 H 1.07996 * 119.54878 * 179.97438 * 24 23 19 39 39 H 1.08997 * 109.58191 * 173.14261 * 25 12 11 40 40 H 1.09000 * 109.58404 * 293.56973 * 25 12 11 41 41 H 1.09004 * 109.56227 * 185.55021 * 26 25 12 42 42 H 1.08994 * 109.36282 * 65.49817 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2458 -3.6622 0.0005 11 6 1.4767 -4.9866 0.0351 12 7 0.5224 -5.0087 -1.0818 13 6 0.5122 -6.0344 -1.9560 14 8 1.2960 -6.9506 -1.8251 15 6 -0.4686 -6.0395 -3.1002 16 6 -0.2695 -7.2837 -3.9269 17 6 0.6118 -7.2793 -4.9969 18 6 0.7687 -8.4457 -5.7288 19 6 0.0318 -9.5732 -5.3715 20 6 0.1841 -10.8257 -6.1464 21 8 0.9489 -10.8676 -7.0886 22 8 -0.5257 -11.9185 -5.8062 23 7 -0.8057 -9.5335 -4.3424 24 6 -0.9700 -8.4416 -3.6283 25 6 -0.4165 -3.8884 -1.2311 26 6 0.3701 -2.5790 -1.2484 27 1 -0.4850 0.8401 -0.0004 28 1 0.6245 -2.5567 0.8907 29 1 2.8881 -3.5915 0.8782 30 1 2.8562 -3.6195 -0.9015 31 1 0.9370 -5.0712 0.9785 32 1 2.1735 -5.8189 -0.0631 33 1 -1.4852 -6.0231 -2.7074 34 1 -0.3053 -5.1597 -3.7226 35 1 1.1664 -6.3884 -5.2521 36 1 1.4495 -8.4792 -6.5666 37 1 -0.3929 -12.7126 -6.3419 38 1 -1.6608 -8.4470 -2.7982 39 1 -0.9666 -3.9949 -2.1660 40 1 -1.1135 -3.8817 -0.3932 41 1 -0.3224 -1.7373 -1.2596 42 1 0.9978 -2.5462 -2.1389 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601064382.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:45 Heat of formation + Delta-G solvation = -117.249830 kcal Electronic energy + Delta-G solvation = -25822.073906 eV Core-core repulsion = 21958.810846 eV Total energy + Delta-G solvation = -3863.263060 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.95161 -41.15567 -40.34934 -38.38298 -37.22458 -35.30860 -34.85205 -33.25394 -32.92207 -31.73149 -29.75196 -27.89995 -25.72401 -24.78793 -24.42644 -23.77782 -22.56236 -21.38827 -19.75824 -19.47247 -18.68371 -18.59429 -17.92245 -17.57067 -17.00815 -16.86957 -16.51951 -16.20050 -15.95926 -15.67554 -15.03573 -14.85261 -14.61589 -14.56022 -14.35116 -14.20526 -14.07878 -13.95130 -13.38756 -13.13835 -13.02439 -12.78202 -12.72275 -12.66579 -12.44942 -12.12368 -12.07069 -11.88967 -11.44204 -11.10390 -10.98944 -10.91140 -10.70241 -10.68832 -10.37420 -10.14289 -9.51043 -8.06540 -6.18807 -0.64046 0.16632 1.25512 1.41767 1.44968 1.52758 1.65935 1.83333 2.13443 2.45251 2.71060 3.19038 3.20389 3.53287 3.68066 3.77421 3.87188 3.97422 4.15828 4.23040 4.31222 4.39199 4.47805 4.55524 4.60249 4.66322 4.68130 4.81589 4.90147 4.94187 5.03261 5.09487 5.21961 5.29515 5.37980 5.46027 5.47990 5.58798 5.68301 6.02747 6.19269 6.42494 6.55714 6.57489 6.90564 6.93915 7.20485 7.48799 8.96508 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.031769 B = 0.002342 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.161216 B =11952.184540 C =12108.697610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.020 3.980 3 Si 0.944 3.056 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.276 1.276 7 C -0.534 4.534 8 H 0.044 0.956 9 C 0.044 3.956 10 C -0.114 4.114 11 C 0.118 3.882 12 N -0.602 5.602 13 C 0.513 3.487 14 O -0.587 6.587 15 C -0.098 4.098 16 C -0.076 4.076 17 C -0.074 4.074 18 C -0.102 4.102 19 C 0.055 3.945 20 C 0.550 3.450 21 O -0.532 6.532 22 O -0.492 6.492 23 N -0.453 5.453 24 C 0.103 3.897 25 C 0.112 3.888 26 C -0.118 4.118 27 H 0.262 0.738 28 H 0.003 0.997 29 H 0.058 0.942 30 H 0.042 0.958 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.144 0.856 34 H 0.134 0.866 35 H 0.167 0.833 36 H 0.160 0.840 37 H 0.433 0.567 38 H 0.185 0.815 39 H 0.112 0.888 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.621 -15.013 -10.069 18.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.179 4.179 3 Si 0.771 3.229 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.201 1.201 7 C -0.572 4.572 8 H 0.062 0.938 9 C 0.025 3.975 10 C -0.152 4.152 11 C -0.005 4.005 12 N -0.334 5.334 13 C 0.303 3.697 14 O -0.469 6.469 15 C -0.138 4.138 16 C -0.079 4.079 17 C -0.099 4.099 18 C -0.122 4.122 19 C -0.080 4.080 20 C 0.393 3.607 21 O -0.422 6.422 22 O -0.305 6.305 23 N -0.164 5.164 24 C -0.058 4.058 25 C -0.010 4.010 26 C -0.157 4.157 27 H 0.071 0.929 28 H 0.021 0.979 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.162 0.838 34 H 0.152 0.848 35 H 0.184 0.816 36 H 0.178 0.822 37 H 0.295 0.705 38 H 0.202 0.798 39 H 0.130 0.870 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -5.683 -15.833 -9.830 19.483 hybrid contribution 1.288 1.401 -0.224 1.916 sum -4.395 -14.432 -10.054 18.129 Atomic orbital electron populations 1.69925 1.06606 1.27075 1.51251 1.25567 0.95686 1.01668 0.94968 0.85776 0.78749 0.80286 0.78120 1.20253 1.20938 1.20073 1.21544 0.92806 0.92402 1.50492 0.93783 1.18626 0.93090 0.91645 0.94111 1.21846 0.98339 0.94555 1.00441 1.21528 0.92038 0.97904 0.88997 1.48278 1.36007 1.21307 1.27768 1.20934 0.84556 0.80996 0.83203 1.90686 1.43046 1.37457 1.75677 1.20818 1.01511 0.97075 0.94375 1.20870 0.95491 0.96471 0.95040 1.21828 0.95722 0.98993 0.93367 1.22218 0.97911 0.91595 1.00483 1.20131 0.99007 0.92512 0.96329 1.20486 0.76144 0.83631 0.80431 1.90888 1.37283 1.84878 1.29160 1.84648 1.62901 1.22873 1.60036 1.67620 1.15590 1.29025 1.04190 1.23104 0.98223 0.86672 0.97765 1.21915 0.90909 0.84801 1.03329 1.21728 0.99477 0.96617 0.97861 0.92915 0.97904 0.92357 0.93950 0.91328 0.90475 0.83788 0.84768 0.81587 0.82196 0.70511 0.79822 0.87003 0.91340 0.90112 0.95008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.92 11.30 21.45 0.24 -47.68 16 2 C 0.02 1.05 5.30 84.65 0.45 1.50 16 3 Si 0.94 41.45 29.54 68.60 2.03 43.47 16 4 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 6 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.53 -27.67 8.56 25.60 0.22 -27.45 16 8 H 0.04 2.31 7.74 -2.91 -0.02 2.28 16 9 C 0.04 1.98 2.07 -11.51 -0.02 1.95 16 10 C -0.11 -4.39 5.30 30.67 0.16 -4.23 16 11 C 0.12 3.89 6.44 86.36 0.56 4.45 16 12 N -0.60 -17.71 2.98 -819.72 -2.44 -20.15 16 13 C 0.51 13.93 7.69 87.66 0.67 14.60 16 14 O -0.59 -20.42 15.45 -3.04 -0.05 -20.46 16 15 C -0.10 -1.65 4.20 29.10 0.12 -1.53 16 16 C -0.08 -1.47 4.40 -19.69 -0.09 -1.56 16 17 C -0.07 -1.39 9.85 22.45 0.22 -1.16 16 18 C -0.10 -2.09 9.63 22.62 0.22 -1.88 16 19 C 0.06 1.31 6.75 41.89 0.28 1.60 16 20 C 0.55 12.39 8.32 70.43 0.59 12.97 16 21 O -0.53 -13.67 17.11 20.06 0.34 -13.33 16 22 O -0.49 -8.54 13.24 -55.83 -0.74 -9.28 16 23 N -0.45 -11.04 10.12 -184.95 -1.87 -12.91 16 24 C 0.10 2.12 10.86 84.82 0.92 3.04 16 25 C 0.11 3.16 6.32 86.22 0.54 3.70 16 26 C -0.12 -4.66 5.14 30.53 0.16 -4.50 16 27 H 0.26 13.20 8.31 -92.71 -0.77 12.43 16 28 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 29 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 32 H 0.08 2.59 7.00 -2.39 -0.02 2.57 16 33 H 0.14 1.53 7.91 -2.38 -0.02 1.51 16 34 H 0.13 1.74 7.63 -2.39 -0.02 1.72 16 35 H 0.17 2.38 8.06 -2.91 -0.02 2.35 16 36 H 0.16 2.85 7.64 -2.91 -0.02 2.83 16 37 H 0.43 2.78 9.11 -74.06 -0.67 2.11 16 38 H 0.18 2.82 8.06 -2.91 -0.02 2.80 16 39 H 0.11 2.20 5.93 -2.39 -0.01 2.18 16 40 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.08 3.63 6.03 -2.38 -0.01 3.62 16 42 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -70.11 354.15 2.90 -67.21 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 0.38 Total: 11.62 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: 5.00 Total: 1.51 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -4.07 Total: -80.74 kcal Atomic # 8 Polarization: -42.63 SS G_CDS: -0.44 Total: -43.07 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.47 kcal Total: -70.11 2.90 -67.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064382.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.037 kcal (2) G-P(sol) polarization free energy of solvation -70.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds