Wall clock time and date at job start Tue Mar 31 2020 12:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99867 * 2 1 4 4 H 1.48504 * 109.46833 * 269.99814 * 3 2 1 5 5 H 1.48497 * 109.47544 * 29.99556 * 3 2 1 6 6 H 1.48500 * 109.47309 * 150.00017 * 3 2 1 7 7 C 1.37874 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99716 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00094 * 180.02562 * 7 2 1 10 10 C 1.53007 * 109.46869 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46551 * 179.97438 * 10 9 7 12 12 C 1.50704 * 109.46644 * 179.97438 * 11 10 9 13 13 O 1.21274 * 119.99971 * 5.45649 * 12 11 10 14 14 N 1.34780 * 119.99627 * 185.44977 * 12 11 10 15 15 C 1.46926 * 120.47550 * 353.87482 * 14 12 11 16 16 C 1.53430 * 107.77940 * 224.47225 * 15 14 12 17 17 C 1.52824 * 108.99915 * 296.83386 * 16 15 14 18 18 C 1.50727 * 110.47074 * 51.43164 * 17 16 15 19 19 N 1.31859 * 118.70636 * 159.41350 * 18 17 16 20 20 C 1.32650 * 122.06770 * 179.81960 * 19 18 17 21 21 C 1.47801 * 119.59977 * 180.02562 * 20 19 18 22 22 O 1.21471 * 119.99511 * 180.02562 * 21 20 19 23 23 O 1.34714 * 120.00218 * 0.02562 * 21 20 19 24 24 C 1.39543 * 120.79576 * 0.02562 * 20 19 18 25 25 C 1.38247 * 118.88147 * 0.06256 * 24 20 19 26 26 C 1.39138 * 121.19880 * 339.36852 * 18 17 16 27 27 H 0.97007 * 120.00188 * 0.02562 * 1 2 3 28 28 H 1.08991 * 109.47334 * 59.99976 * 9 7 2 29 29 H 1.09001 * 109.46723 * 299.99955 * 9 7 2 30 30 H 1.08991 * 109.47473 * 59.99681 * 10 9 7 31 31 H 1.09002 * 109.46610 * 299.99537 * 10 9 7 32 32 H 1.09000 * 109.47322 * 60.00060 * 11 10 9 33 33 H 1.08994 * 109.47207 * 299.99782 * 11 10 9 34 34 H 1.09002 * 109.69709 * 104.96052 * 15 14 12 35 35 H 1.08998 * 109.89574 * 344.09781 * 15 14 12 36 36 H 1.09001 * 109.56408 * 176.94936 * 16 15 14 37 37 H 1.09003 * 109.56368 * 56.72347 * 16 15 14 38 38 H 1.09000 * 109.30634 * 171.73660 * 17 16 15 39 39 H 1.09004 * 109.30761 * 291.32498 * 17 16 15 40 40 H 0.96699 * 116.99822 * 180.02562 * 23 21 20 41 41 H 1.07998 * 120.55815 * 180.08266 * 24 20 19 42 42 H 1.08003 * 120.75124 * 180.02562 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6365 0.0009 12 6 6.0538 -4.0574 0.0015 13 8 5.2702 -4.9776 -0.0980 14 7 7.3740 -4.3053 0.1124 15 6 8.3433 -3.2013 0.0985 16 6 9.5038 -3.6082 -0.8189 17 6 10.1982 -4.8348 -0.2283 18 6 9.1912 -5.9128 0.0810 19 7 9.6116 -7.1568 0.2008 20 6 8.7841 -8.1565 0.4754 21 6 9.3146 -9.5306 0.5981 22 8 8.5632 -10.4515 0.8489 23 8 10.6313 -9.7617 0.4320 24 6 7.4188 -7.9265 0.6496 25 6 6.9385 -6.6357 0.5302 26 6 7.8416 -5.6140 0.2404 27 1 -0.4851 0.8401 -0.0004 28 1 3.8745 -0.6800 0.8910 29 1 3.8752 -0.6804 -0.8889 30 1 3.6585 -3.1502 -0.8891 31 1 3.6578 -3.1505 0.8908 32 1 5.9149 -2.1227 0.8909 33 1 5.9148 -2.1227 -0.8890 34 1 8.7148 -3.0258 1.1081 35 1 7.8700 -2.2969 -0.2840 36 1 10.2158 -2.7862 -0.8933 37 1 9.1188 -3.8485 -1.8099 38 1 10.9261 -5.2165 -0.9443 39 1 10.7115 -4.5510 0.6905 40 1 10.9311 -10.6766 0.5214 41 1 6.7487 -8.7431 0.8744 42 1 5.8875 -6.4233 0.6595 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601064750.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:41 Heat of formation + Delta-G solvation = -89.435672 kcal Electronic energy + Delta-G solvation = -25859.921421 eV Core-core repulsion = 21997.864473 eV Total energy + Delta-G solvation = -3862.056947 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.79270 -40.47394 -39.28522 -37.23277 -36.37123 -34.70086 -34.10927 -32.48418 -31.67480 -31.36606 -28.64604 -26.76761 -25.67204 -24.14069 -23.64830 -22.47471 -20.98857 -20.29839 -19.50812 -18.75520 -17.66127 -17.56374 -17.17627 -16.68886 -16.31339 -16.02934 -15.98947 -15.23497 -14.72869 -14.51453 -14.22352 -14.19049 -13.93825 -13.67570 -13.45844 -13.34446 -13.02850 -12.73006 -12.22302 -12.14729 -11.88377 -11.83333 -11.65656 -11.60597 -11.14306 -11.08520 -10.94540 -10.87165 -10.41704 -10.06522 -9.90933 -9.81909 -9.77513 -9.39108 -9.21670 -8.57969 -8.40630 -6.07170 -4.05852 0.19659 0.91028 1.99973 2.33700 2.47459 2.64071 3.25785 3.33230 3.34923 3.46885 3.70132 4.13394 4.21734 4.34701 4.40421 4.48012 4.56173 4.74621 4.89179 4.93184 5.07567 5.11525 5.17161 5.25348 5.27563 5.33984 5.39827 5.50079 5.57814 5.68492 5.82781 5.89295 5.91290 6.10839 6.38649 6.45144 6.52602 6.77530 6.84044 7.23856 7.31520 7.33142 7.68140 7.74192 7.81043 8.51046 8.98924 9.54185 11.06363 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024815 B = 0.002545 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.063508 B =10998.767809 C =12041.823577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.090 4.090 11 C -0.139 4.139 12 C 0.516 3.484 13 O -0.501 6.501 14 N -0.555 5.555 15 C 0.095 3.905 16 C -0.137 4.137 17 C -0.064 4.064 18 C 0.089 3.911 19 N -0.413 5.413 20 C 0.050 3.950 21 C 0.548 3.452 22 O -0.511 6.511 23 O -0.495 6.495 24 C -0.078 4.078 25 C -0.125 4.125 26 C 0.155 3.845 27 H 0.263 0.737 28 H 0.016 0.984 29 H 0.012 0.988 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.411 0.589 41 H 0.153 0.847 42 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.819 -10.438 0.428 27.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.136 4.136 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.559 4.559 8 H 0.091 0.909 9 C -0.051 4.051 10 C -0.128 4.128 11 C -0.178 4.178 12 C 0.308 3.692 13 O -0.376 6.376 14 N -0.278 5.278 15 C -0.027 4.027 16 C -0.175 4.175 17 C -0.102 4.102 18 C -0.056 4.056 19 N -0.125 5.125 20 C -0.088 4.088 21 C 0.391 3.609 22 O -0.399 6.399 23 O -0.305 6.305 24 C -0.099 4.099 25 C -0.152 4.152 26 C 0.056 3.944 27 H 0.073 0.927 28 H 0.034 0.966 29 H 0.030 0.970 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.102 0.898 35 H 0.124 0.876 36 H 0.115 0.885 37 H 0.095 0.905 38 H 0.112 0.888 39 H 0.107 0.893 40 H 0.269 0.731 41 H 0.171 0.829 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 25.706 -10.778 0.293 27.875 hybrid contribution -0.235 0.420 0.160 0.507 sum 25.471 -10.358 0.453 27.500 Atomic orbital electron populations 1.69918 1.06322 1.26887 1.50993 1.25056 0.94755 0.99184 0.94632 0.86762 0.80285 0.83656 0.78428 1.20321 1.21403 1.19056 1.21123 0.89396 0.94583 1.50828 0.90915 1.19594 0.97480 0.91787 0.96203 1.21335 0.88523 1.00092 1.02818 1.21993 1.01154 0.90430 1.04241 1.21640 0.79860 0.93556 0.74160 1.90514 1.54849 1.46068 1.46128 1.45997 1.07854 1.04908 1.69058 1.22197 0.89661 0.89246 1.01568 1.21930 0.97601 0.98386 0.99587 1.20332 0.95840 0.91386 1.02635 1.20979 0.91004 0.92191 1.01407 1.67354 1.37907 0.98765 1.08428 1.19713 0.90729 0.90506 1.07813 1.20413 0.80094 0.88080 0.72334 1.90919 1.59074 1.44681 1.45234 1.84693 1.25434 1.37095 1.83289 1.22091 0.94264 0.98242 0.95321 1.22699 1.03708 0.90579 0.98246 1.19016 0.93803 0.85745 0.95885 0.92709 0.96578 0.97007 0.91706 0.91929 0.88686 0.88489 0.89796 0.87620 0.88535 0.90460 0.88764 0.89346 0.73141 0.82921 0.79464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 2 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 3 Si 0.88 20.93 27.47 -169.99 -4.67 16.26 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -5.91 6.54 56.52 0.37 -5.54 16 7 C -0.52 -14.60 9.66 -34.44 -0.33 -14.93 16 8 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 9 C -0.01 -0.30 4.04 -27.88 -0.11 -0.41 16 10 C -0.09 -1.67 4.46 -26.73 -0.12 -1.79 16 11 C -0.14 -1.82 4.12 -27.88 -0.11 -1.93 16 12 C 0.52 6.98 7.55 -10.98 -0.08 6.89 16 13 O -0.50 -8.38 12.65 5.56 0.07 -8.31 16 14 N -0.56 -6.01 2.96 -112.76 -0.33 -6.35 16 15 C 0.09 0.64 6.16 -3.59 -0.02 0.62 16 16 C -0.14 -0.76 6.10 -26.60 -0.16 -0.92 16 17 C -0.06 -0.45 6.00 -27.96 -0.17 -0.62 16 18 C 0.09 0.96 6.67 -82.23 -0.55 0.41 16 19 N -0.41 -5.01 9.97 -5.91 -0.06 -5.07 16 20 C 0.05 0.62 6.74 -83.12 -0.56 0.06 16 21 C 0.55 6.34 8.31 34.64 0.29 6.62 16 22 O -0.51 -6.83 17.10 -19.24 -0.33 -7.16 16 23 O -0.50 -4.38 13.24 -40.53 -0.54 -4.91 16 24 C -0.08 -0.94 9.63 -39.09 -0.38 -1.32 16 25 C -0.13 -1.62 8.94 -39.14 -0.35 -1.97 16 26 C 0.16 1.85 6.32 -83.57 -0.53 1.32 16 27 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.02 0.35 7.20 -51.93 -0.37 -0.02 16 29 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 30 H 0.06 1.29 8.04 -51.93 -0.42 0.87 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.09 1.05 8.06 -51.93 -0.42 0.64 16 33 H 0.10 1.07 7.59 -51.93 -0.39 0.68 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.11 0.57 6.27 -51.93 -0.33 0.25 16 36 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.41 1.50 9.11 45.56 0.42 1.91 16 41 H 0.15 1.66 7.64 -52.49 -0.40 1.26 16 42 H 0.19 2.67 5.05 -53.37 -0.27 2.40 16 LS Contribution 349.95 15.07 5.27 5.27 Total: -1.00 -35.63 349.95 -7.80 -43.43 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -4.70 Total: -0.12 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -3.29 Total: -6.20 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.38 Total: -38.26 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.80 Total: -20.39 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.26 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.63 -7.80 -43.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064750.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.005 kcal (2) G-P(sol) polarization free energy of solvation -35.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds