Wall clock time and date at job start Tue Mar 31 2020 12:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99867 * 2 1 4 4 H 1.48504 * 109.46833 * 269.99814 * 3 2 1 5 5 H 1.48497 * 109.47544 * 29.99556 * 3 2 1 6 6 H 1.48500 * 109.47309 * 150.00017 * 3 2 1 7 7 C 1.37874 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99716 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00094 * 180.02562 * 7 2 1 10 10 C 1.53007 * 109.46869 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46551 * 179.97438 * 10 9 7 12 12 C 1.50704 * 109.46644 * 179.97438 * 11 10 9 13 13 O 1.21274 * 119.99971 * 5.45649 * 12 11 10 14 14 N 1.34780 * 119.99627 * 185.44977 * 12 11 10 15 15 C 1.46926 * 120.47550 * 353.87482 * 14 12 11 16 16 C 1.53430 * 107.77940 * 224.47225 * 15 14 12 17 17 C 1.52824 * 108.99915 * 296.83386 * 16 15 14 18 18 C 1.50727 * 110.47074 * 51.43164 * 17 16 15 19 19 N 1.31859 * 118.70636 * 159.41350 * 18 17 16 20 20 C 1.32650 * 122.06770 * 179.81960 * 19 18 17 21 21 C 1.47801 * 119.59977 * 180.02562 * 20 19 18 22 22 O 1.21471 * 119.99511 * 180.02562 * 21 20 19 23 23 O 1.34714 * 120.00218 * 0.02562 * 21 20 19 24 24 C 1.39543 * 120.79576 * 0.02562 * 20 19 18 25 25 C 1.38247 * 118.88147 * 0.06256 * 24 20 19 26 26 C 1.39138 * 121.19880 * 339.36852 * 18 17 16 27 27 H 0.97007 * 120.00188 * 0.02562 * 1 2 3 28 28 H 1.08991 * 109.47334 * 59.99976 * 9 7 2 29 29 H 1.09001 * 109.46723 * 299.99955 * 9 7 2 30 30 H 1.08991 * 109.47473 * 59.99681 * 10 9 7 31 31 H 1.09002 * 109.46610 * 299.99537 * 10 9 7 32 32 H 1.09000 * 109.47322 * 60.00060 * 11 10 9 33 33 H 1.08994 * 109.47207 * 299.99782 * 11 10 9 34 34 H 1.09002 * 109.69709 * 104.96052 * 15 14 12 35 35 H 1.08998 * 109.89574 * 344.09781 * 15 14 12 36 36 H 1.09001 * 109.56408 * 176.94936 * 16 15 14 37 37 H 1.09003 * 109.56368 * 56.72347 * 16 15 14 38 38 H 1.09000 * 109.30634 * 171.73660 * 17 16 15 39 39 H 1.09004 * 109.30761 * 291.32498 * 17 16 15 40 40 H 0.96699 * 116.99822 * 180.02562 * 23 21 20 41 41 H 1.07998 * 120.55815 * 180.08266 * 24 20 19 42 42 H 1.08003 * 120.75124 * 180.02562 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6365 0.0009 12 6 6.0538 -4.0574 0.0015 13 8 5.2702 -4.9776 -0.0980 14 7 7.3740 -4.3053 0.1124 15 6 8.3433 -3.2013 0.0985 16 6 9.5038 -3.6082 -0.8189 17 6 10.1982 -4.8348 -0.2283 18 6 9.1912 -5.9128 0.0810 19 7 9.6116 -7.1568 0.2008 20 6 8.7841 -8.1565 0.4754 21 6 9.3146 -9.5306 0.5981 22 8 8.5632 -10.4515 0.8489 23 8 10.6313 -9.7617 0.4320 24 6 7.4188 -7.9265 0.6496 25 6 6.9385 -6.6357 0.5302 26 6 7.8416 -5.6140 0.2404 27 1 -0.4851 0.8401 -0.0004 28 1 3.8745 -0.6800 0.8910 29 1 3.8752 -0.6804 -0.8889 30 1 3.6585 -3.1502 -0.8891 31 1 3.6578 -3.1505 0.8908 32 1 5.9149 -2.1227 0.8909 33 1 5.9148 -2.1227 -0.8890 34 1 8.7148 -3.0258 1.1081 35 1 7.8700 -2.2969 -0.2840 36 1 10.2158 -2.7862 -0.8933 37 1 9.1188 -3.8485 -1.8099 38 1 10.9261 -5.2165 -0.9443 39 1 10.7115 -4.5510 0.6905 40 1 10.9311 -10.6766 0.5214 41 1 6.7487 -8.7431 0.8744 42 1 5.8875 -6.4233 0.6595 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601064750.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:40 Heat of formation + Delta-G solvation = -114.537322 kcal Electronic energy + Delta-G solvation = -25861.009910 eV Core-core repulsion = 21997.864473 eV Total energy + Delta-G solvation = -3863.145437 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.66578 -41.37361 -40.23606 -38.02779 -37.20373 -36.26735 -34.96017 -34.24896 -32.78202 -32.15732 -30.18855 -27.44032 -26.86308 -25.09622 -24.89634 -23.32574 -22.20292 -21.52092 -20.42628 -19.63102 -18.84584 -18.52243 -18.44016 -17.97399 -17.25992 -16.93970 -16.90013 -16.25941 -16.04536 -15.55145 -15.35111 -15.16484 -14.86859 -14.70085 -14.56681 -14.29971 -14.03662 -13.96287 -13.80268 -13.25834 -12.91070 -12.74152 -12.64407 -12.50721 -12.25172 -12.12474 -11.92141 -11.79145 -11.75990 -11.65255 -11.47704 -11.36085 -11.28528 -10.72926 -10.71200 -10.36620 -9.26755 -8.25499 -6.31425 -0.73217 0.00571 1.06553 1.41119 1.44858 1.49986 1.52851 1.56522 1.84960 2.41332 2.58170 2.96709 3.10097 3.28900 3.43194 3.68476 3.79216 3.93650 4.02526 4.05874 4.11253 4.22165 4.22631 4.48230 4.56591 4.60787 4.71960 4.78205 4.89047 4.93929 4.95827 4.96576 5.05597 5.06786 5.15907 5.27185 5.38457 5.55738 5.58935 5.62313 5.69729 6.00129 6.32556 6.48959 6.78127 6.83158 6.92428 7.33106 8.92112 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024815 B = 0.002545 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.063508 B =10998.767809 C =12041.823577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.007 4.007 3 Si 0.962 3.038 4 H -0.265 1.265 5 H -0.291 1.291 6 H -0.229 1.229 7 C -0.539 4.539 8 H 0.018 0.982 9 C -0.009 4.009 10 C -0.083 4.083 11 C -0.125 4.125 12 C 0.513 3.487 13 O -0.547 6.547 14 N -0.547 5.547 15 C 0.081 3.919 16 C -0.129 4.129 17 C -0.064 4.064 18 C 0.094 3.906 19 N -0.422 5.422 20 C 0.037 3.963 21 C 0.554 3.446 22 O -0.536 6.536 23 O -0.489 6.489 24 C -0.084 4.084 25 C -0.142 4.142 26 C 0.145 3.855 27 H 0.265 0.735 28 H 0.034 0.966 29 H 0.032 0.968 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.105 0.895 35 H 0.127 0.873 36 H 0.134 0.866 37 H 0.066 0.934 38 H 0.101 0.899 39 H 0.109 0.891 40 H 0.433 0.567 41 H 0.154 0.846 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.392 -7.727 0.311 31.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.202 4.202 3 Si 0.784 3.216 4 H -0.190 1.190 5 H -0.217 1.217 6 H -0.152 1.152 7 C -0.577 4.577 8 H 0.036 0.964 9 C -0.046 4.046 10 C -0.122 4.122 11 C -0.164 4.164 12 C 0.306 3.694 13 O -0.425 6.425 14 N -0.269 5.269 15 C -0.038 4.038 16 C -0.167 4.167 17 C -0.102 4.102 18 C -0.051 4.051 19 N -0.134 5.134 20 C -0.100 4.100 21 C 0.398 3.602 22 O -0.426 6.426 23 O -0.302 6.302 24 C -0.105 4.105 25 C -0.169 4.169 26 C 0.045 3.955 27 H 0.074 0.926 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.123 0.877 35 H 0.145 0.855 36 H 0.152 0.848 37 H 0.085 0.915 38 H 0.119 0.881 39 H 0.127 0.873 40 H 0.295 0.705 41 H 0.172 0.828 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 30.360 -8.094 0.178 31.421 hybrid contribution -1.681 -0.540 0.192 1.776 sum 28.679 -8.634 0.371 29.953 Atomic orbital electron populations 1.70118 1.08830 1.28239 1.52799 1.26240 0.95736 1.04295 0.93952 0.85493 0.79856 0.76885 0.79360 1.18979 1.21690 1.15184 1.21573 0.92898 0.92701 1.50552 0.96387 1.19542 0.93242 0.94206 0.97629 1.21087 0.93064 0.97445 1.00564 1.21843 0.96461 0.90739 1.07383 1.21735 0.80621 0.93287 0.73778 1.90528 1.56387 1.47251 1.48352 1.46047 1.07578 1.05532 1.67720 1.22700 0.89312 0.88400 1.03405 1.21958 0.97663 0.98681 0.98366 1.20540 0.95042 0.90713 1.03891 1.21670 0.91244 0.92679 0.99480 1.67454 1.37805 0.99227 1.08890 1.19885 0.90812 0.91252 1.08038 1.20278 0.80668 0.87510 0.71780 1.90907 1.59866 1.45292 1.46581 1.84637 1.23756 1.39250 1.82541 1.22105 0.94650 0.98123 0.95647 1.22599 1.03307 0.91589 0.99444 1.19150 0.94233 0.86073 0.96027 0.92618 0.94760 0.94945 0.94283 0.94314 0.85418 0.85200 0.87724 0.85473 0.84817 0.91535 0.88050 0.87320 0.70515 0.82799 0.81320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.80 13.96 21.45 0.30 -60.50 16 2 C -0.01 -0.38 5.47 84.65 0.46 0.08 16 3 Si 0.96 41.91 27.47 68.60 1.88 43.80 16 4 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 5 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.23 -8.59 6.54 99.48 0.65 -7.94 16 7 C -0.54 -31.07 9.66 25.60 0.25 -30.83 16 8 H 0.02 1.18 7.99 -2.91 -0.02 1.15 16 9 C -0.01 -0.38 4.04 29.85 0.12 -0.26 16 10 C -0.08 -3.10 4.46 30.60 0.14 -2.96 16 11 C -0.13 -2.90 4.12 29.85 0.12 -2.77 16 12 C 0.51 13.31 7.55 87.66 0.66 13.98 16 13 O -0.55 -19.11 12.65 -3.01 -0.04 -19.15 16 14 N -0.55 -10.63 2.96 -629.07 -1.86 -12.49 16 15 C 0.08 0.71 6.16 86.44 0.53 1.24 16 16 C -0.13 -0.81 6.10 30.68 0.19 -0.62 16 17 C -0.06 -0.66 6.00 29.80 0.18 -0.48 16 18 C 0.09 1.86 6.67 42.78 0.29 2.15 16 19 N -0.42 -9.75 9.97 -172.62 -1.72 -11.47 16 20 C 0.04 0.91 6.74 41.87 0.28 1.20 16 21 C 0.55 12.69 8.31 70.35 0.58 13.28 16 22 O -0.54 -14.53 17.10 19.93 0.34 -14.19 16 23 O -0.49 -8.00 13.24 -56.24 -0.74 -8.75 16 24 C -0.08 -2.14 9.63 22.59 0.22 -1.93 16 25 C -0.14 -3.84 8.94 22.55 0.20 -3.64 16 26 C 0.15 3.34 6.32 38.41 0.24 3.58 16 27 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 28 H 0.03 1.36 7.20 -2.39 -0.02 1.34 16 29 H 0.03 1.27 7.57 -2.39 -0.02 1.25 16 30 H 0.04 1.61 8.04 -2.39 -0.02 1.59 16 31 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.13 2.18 8.06 -2.39 -0.02 2.16 16 33 H 0.13 2.21 7.59 -2.39 -0.02 2.19 16 34 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.13 0.60 6.27 -2.39 -0.01 0.59 16 36 H 0.13 -0.05 8.14 -2.39 -0.02 -0.07 16 37 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.43 2.46 9.11 -74.06 -0.67 1.78 16 41 H 0.15 3.68 7.64 -2.91 -0.02 3.66 16 42 H 0.17 5.26 5.05 -16.90 -0.09 5.17 16 Total: -1.00 -83.84 349.95 2.89 -80.95 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 0.27 Total: 9.79 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: 4.46 Total: -7.98 kcal Atomic # 7 Polarization: -81.18 SS G_CDS: -3.28 Total: -84.46 kcal Atomic # 8 Polarization: -41.65 SS G_CDS: -0.44 Total: -42.09 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 1.88 Total: 43.80 kcal Total: -83.84 2.89 -80.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064750.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.592 kcal (2) G-P(sol) polarization free energy of solvation -83.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds