Wall clock time and date at job start Tue Mar 31 2020 12:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99784 * 2 1 4 4 H 1.48511 * 109.46996 * 270.00132 * 3 2 1 5 5 H 1.48504 * 109.47258 * 29.99827 * 3 2 1 6 6 H 1.48494 * 109.47069 * 150.00470 * 3 2 1 7 7 C 1.37873 * 120.00356 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99919 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00133 * 179.97438 * 7 2 1 10 10 C 1.50698 * 109.47298 * 179.97438 * 9 7 2 11 11 C 1.38289 * 119.92991 * 89.99812 * 10 9 7 12 12 C 1.38112 * 120.06902 * 180.02562 * 11 10 9 13 13 C 1.38862 * 119.93263 * 0.02562 * 12 11 10 14 14 N 1.39947 * 120.07438 * 179.97438 * 13 12 11 15 15 C 1.34774 * 119.99691 * 35.08758 * 14 13 12 16 16 O 1.21586 * 120.00109 * 355.37861 * 15 14 13 17 17 N 1.34782 * 119.99762 * 175.10966 * 15 14 13 18 18 C 1.46504 * 119.99885 * 180.27478 * 17 15 14 19 19 H 1.09002 * 112.84551 * 23.80332 * 18 17 15 20 20 C 1.53776 * 113.61536 * 154.99469 * 18 17 15 21 21 C 1.53776 * 87.08039 * 139.98200 * 20 18 17 22 22 H 1.09001 * 113.61373 * 89.11990 * 21 20 18 23 23 C 1.50704 * 113.61489 * 220.02143 * 21 20 18 24 24 O 1.20826 * 120.00140 * 0.02562 * 23 21 20 25 25 O 1.34233 * 120.00121 * 179.97438 * 23 21 20 26 26 C 1.53775 * 113.61499 * 252.49735 * 18 17 15 27 27 C 1.38867 * 119.86077 * 0.25602 * 13 12 11 28 28 C 1.38121 * 119.92858 * 359.46979 * 27 13 12 29 29 H 0.97007 * 120.00274 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47246 * 60.00448 * 9 7 2 31 31 H 1.08995 * 109.47372 * 299.99753 * 9 7 2 32 32 H 1.07994 * 119.96501 * 0.02562 * 11 10 9 33 33 H 1.08003 * 120.03214 * 180.02562 * 12 11 10 34 34 H 0.97003 * 120.00308 * 215.09646 * 14 13 12 35 35 H 0.96988 * 120.00159 * 0.27447 * 17 15 14 36 36 H 1.08991 * 113.61656 * 254.53479 * 20 18 17 37 37 H 1.09007 * 113.61158 * 25.43429 * 20 18 17 38 38 H 0.96698 * 117.00435 * 180.02562 * 25 23 21 39 39 H 1.09006 * 113.61305 * 334.56515 * 26 18 17 40 40 H 1.08997 * 113.61605 * 105.46760 * 26 18 17 41 41 H 1.07998 * 120.03767 * 179.74274 * 27 13 12 42 42 H 1.07992 * 119.96822 * 180.27620 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4002 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 6 4.0139 -2.6147 -0.0010 11 6 4.2435 -3.2655 -1.1994 12 6 4.7034 -4.5677 -1.2026 13 6 4.9349 -5.2238 -0.0009 14 7 5.4005 -6.5436 -0.0007 15 6 6.2574 -6.9559 -0.9557 16 8 6.5605 -6.2076 -1.8648 17 7 6.7825 -8.1960 -0.9001 18 6 7.7186 -8.6421 -1.9350 19 1 8.2247 -7.8150 -2.4328 20 6 8.6712 -9.7544 -1.4658 21 6 8.4736 -10.3985 -2.8482 22 1 9.1860 -10.0523 -3.5970 23 6 8.3532 -11.9000 -2.8030 24 8 8.4147 -12.4794 -1.7445 25 8 8.1766 -12.5937 -3.9385 26 6 7.1186 -9.6733 -2.9052 27 6 4.6979 -4.5696 1.2009 28 6 4.2433 -3.2653 1.1974 29 1 -0.4851 0.8401 0.0004 30 1 3.8752 -0.6803 0.8889 31 1 3.8745 -0.6799 -0.8911 32 1 4.0629 -2.7548 -2.1337 33 1 4.8829 -5.0753 -2.1389 34 1 5.1063 -7.1616 0.6867 35 1 6.5406 -8.7930 -0.1750 36 1 9.6895 -9.4101 -1.2861 37 1 8.2742 -10.3518 -0.6450 38 1 8.1045 -13.5547 -3.8592 39 1 6.2972 -10.2486 -2.4779 40 1 6.8837 -9.2635 -3.8875 41 1 4.8730 -5.0785 2.1372 42 1 4.0630 -2.7544 2.1316 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601068800.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:15 Heat of formation + Delta-G solvation = -74.346783 kcal Electronic energy + Delta-G solvation = -24904.383843 eV Core-core repulsion = 21042.981198 eV Total energy + Delta-G solvation = -3861.402644 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.33138 -40.47300 -39.00065 -37.99040 -36.54614 -34.87953 -33.83678 -32.80608 -30.68342 -30.30150 -27.61976 -26.59699 -26.31297 -23.41997 -22.34892 -22.23091 -21.09210 -20.38679 -19.94518 -18.70732 -18.47991 -17.73830 -17.01800 -16.74051 -16.32516 -15.77812 -15.43457 -15.30916 -14.85121 -14.56948 -14.11791 -14.01050 -13.64035 -13.21260 -13.11504 -13.00005 -12.83663 -12.43442 -12.33127 -12.10189 -11.94573 -11.75388 -11.67603 -11.47101 -11.28040 -10.89546 -10.85787 -10.47658 -10.30676 -10.14731 -9.87599 -9.53321 -9.39299 -9.26708 -8.55970 -8.30032 -7.38293 -6.05083 -4.03845 1.65413 1.90996 2.05299 2.33120 2.68354 3.06829 3.31053 3.38584 3.41838 3.76165 3.84286 4.03939 4.24623 4.33844 4.43916 4.47895 4.81677 5.02231 5.08081 5.14536 5.26791 5.32895 5.41051 5.41841 5.55023 5.66325 5.89906 5.97721 5.99225 6.02365 6.15643 6.21500 6.53144 6.61987 6.86607 6.99203 7.00851 7.07840 7.12716 7.37760 7.62783 7.64631 7.74835 7.82178 8.44250 8.52482 9.00517 9.55479 11.07820 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.040130 B = 0.001913 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.571068 B =14631.300103 C =14766.990676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.511 4.511 8 H 0.074 0.926 9 C 0.014 3.986 10 C -0.040 4.040 11 C -0.107 4.107 12 C -0.115 4.115 13 C 0.123 3.877 14 N -0.681 5.681 15 C 0.703 3.297 16 O -0.571 6.571 17 N -0.735 5.735 18 C 0.147 3.853 19 H 0.126 0.874 20 C -0.128 4.128 21 C -0.110 4.110 22 H 0.131 0.869 23 C 0.491 3.509 24 O -0.515 6.515 25 O -0.514 6.514 26 C -0.136 4.136 27 C -0.144 4.144 28 C -0.106 4.106 29 H 0.264 0.736 30 H 0.027 0.973 31 H 0.024 0.976 32 H 0.122 0.878 33 H 0.131 0.869 34 H 0.402 0.598 35 H 0.398 0.602 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.410 0.590 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.115 0.885 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.177 -24.202 -3.467 30.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.549 4.549 8 H 0.092 0.908 9 C -0.023 4.023 10 C -0.040 4.040 11 C -0.125 4.125 12 C -0.135 4.135 13 C 0.031 3.969 14 N -0.328 5.328 15 C 0.404 3.596 16 O -0.447 6.447 17 N -0.390 5.390 18 C 0.041 3.959 19 H 0.144 0.856 20 C -0.166 4.166 21 C -0.129 4.129 22 H 0.149 0.851 23 C 0.334 3.666 24 O -0.403 6.403 25 O -0.326 6.326 26 C -0.175 4.175 27 C -0.164 4.164 28 C -0.125 4.125 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.140 0.860 33 H 0.149 0.851 34 H 0.237 0.763 35 H 0.232 0.768 36 H 0.107 0.893 37 H 0.120 0.880 38 H 0.269 0.731 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.133 0.867 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 18.377 -23.144 -4.046 29.829 hybrid contribution -0.045 -0.551 0.730 0.915 sum 18.332 -23.695 -3.317 30.142 Atomic orbital electron populations 1.69902 1.06250 1.26922 1.50858 1.25005 0.94743 0.99029 0.94556 0.86804 0.80392 0.83656 0.78653 1.20171 1.21315 1.18912 1.20947 0.88309 0.94632 1.51042 0.90807 1.18802 0.97385 0.88756 0.97351 1.20300 0.93475 0.98091 0.92184 1.20991 0.99119 0.94072 0.98336 1.21143 0.99668 0.95538 0.97193 1.17313 1.01919 0.83391 0.94327 1.42457 1.47365 1.11829 1.31114 1.15962 0.79046 0.81945 0.82694 1.90941 1.64375 1.54032 1.35368 1.45058 1.49230 1.14560 1.30139 1.22254 0.89624 0.95569 0.88463 0.85642 1.23409 1.01503 0.96068 0.95608 1.22285 1.02182 0.86698 1.01783 0.85079 1.23244 0.71388 0.91020 0.80994 1.90729 1.46319 1.71543 1.31724 1.84557 1.84178 1.26603 1.37254 1.23516 0.94813 0.96958 1.02250 1.20715 1.04758 0.95393 0.95563 1.20829 0.99656 0.93586 0.98381 0.92652 0.95432 0.95824 0.86043 0.85084 0.76348 0.76791 0.89323 0.87981 0.73091 0.89083 0.89133 0.86744 0.85958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 7 C -0.51 -14.55 9.65 -34.44 -0.33 -14.88 16 8 H 0.07 2.29 7.98 -52.48 -0.42 1.88 16 9 C 0.01 0.34 4.17 -29.04 -0.12 0.22 16 10 C -0.04 -0.85 5.07 -104.59 -0.53 -1.38 16 11 C -0.11 -2.13 9.69 -39.61 -0.38 -2.52 16 12 C -0.12 -2.11 8.70 -39.40 -0.34 -2.45 16 13 C 0.12 1.99 6.30 -83.69 -0.53 1.46 16 14 N -0.68 -8.20 5.34 -14.22 -0.08 -8.27 16 15 C 0.70 8.77 8.41 -86.92 -0.73 8.04 16 16 O -0.57 -9.41 13.38 5.29 0.07 -9.34 16 17 N -0.74 -5.90 5.36 -57.88 -0.31 -6.21 16 18 C 0.15 1.02 4.24 -67.12 -0.28 0.73 16 19 H 0.13 1.03 7.46 -51.93 -0.39 0.64 16 20 C -0.13 -0.68 7.16 -25.92 -0.19 -0.86 16 21 C -0.11 -0.56 4.26 -90.96 -0.39 -0.95 16 22 H 0.13 0.45 8.14 -51.93 -0.42 0.03 16 23 C 0.49 3.31 7.85 36.01 0.28 3.59 16 24 O -0.52 -5.00 16.66 -18.75 -0.31 -5.31 16 25 O -0.51 -2.58 13.42 -39.27 -0.53 -3.11 16 26 C -0.14 -0.81 7.43 -25.92 -0.19 -1.00 16 27 C -0.14 -2.29 9.97 -39.39 -0.39 -2.68 16 28 C -0.11 -1.99 9.69 -39.61 -0.38 -2.37 16 29 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 30 H 0.03 0.65 7.14 -51.93 -0.37 0.28 16 31 H 0.02 0.56 7.51 -51.93 -0.39 0.17 16 32 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 33 H 0.13 2.40 6.22 -52.48 -0.33 2.07 16 34 H 0.40 3.36 8.84 -40.82 -0.36 3.00 16 35 H 0.40 2.12 8.75 -40.82 -0.36 1.77 16 36 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.10 0.60 7.41 -51.92 -0.38 0.21 16 38 H 0.41 0.46 9.10 45.56 0.41 0.88 16 39 H 0.09 0.56 8.09 -51.93 -0.42 0.14 16 40 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 42 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 359.81 15.07 5.42 5.42 Total: -1.00 -36.65 359.81 -8.94 -45.59 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -4.71 Total: 4.45 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -4.61 Total: -13.18 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.39 Total: -41.34 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.77 Total: -17.76 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.65 -8.94 -45.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068800.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.754 kcal (2) G-P(sol) polarization free energy of solvation -36.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds