Wall clock time and date at job start Tue Mar 31 2020 12:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99784 * 2 1 4 4 H 1.48511 * 109.46996 * 270.00132 * 3 2 1 5 5 H 1.48504 * 109.47258 * 29.99827 * 3 2 1 6 6 H 1.48494 * 109.47069 * 150.00470 * 3 2 1 7 7 C 1.37873 * 120.00356 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99919 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00133 * 179.97438 * 7 2 1 10 10 C 1.50698 * 109.47298 * 179.97438 * 9 7 2 11 11 C 1.38289 * 119.92991 * 89.99812 * 10 9 7 12 12 C 1.38112 * 120.06902 * 180.02562 * 11 10 9 13 13 C 1.38862 * 119.93263 * 0.02562 * 12 11 10 14 14 N 1.39947 * 120.07438 * 179.97438 * 13 12 11 15 15 C 1.34774 * 119.99691 * 35.08758 * 14 13 12 16 16 O 1.21586 * 120.00109 * 355.37861 * 15 14 13 17 17 N 1.34782 * 119.99762 * 175.10966 * 15 14 13 18 18 C 1.46504 * 119.99885 * 180.27478 * 17 15 14 19 19 H 1.09002 * 112.84551 * 23.80332 * 18 17 15 20 20 C 1.53776 * 113.61536 * 154.99469 * 18 17 15 21 21 C 1.53776 * 87.08039 * 139.98200 * 20 18 17 22 22 H 1.09001 * 113.61373 * 89.11990 * 21 20 18 23 23 C 1.50704 * 113.61489 * 220.02143 * 21 20 18 24 24 O 1.20826 * 120.00140 * 0.02562 * 23 21 20 25 25 O 1.34233 * 120.00121 * 179.97438 * 23 21 20 26 26 C 1.53775 * 113.61499 * 252.49735 * 18 17 15 27 27 C 1.38867 * 119.86077 * 0.25602 * 13 12 11 28 28 C 1.38121 * 119.92858 * 359.46979 * 27 13 12 29 29 H 0.97007 * 120.00274 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47246 * 60.00448 * 9 7 2 31 31 H 1.08995 * 109.47372 * 299.99753 * 9 7 2 32 32 H 1.07994 * 119.96501 * 0.02562 * 11 10 9 33 33 H 1.08003 * 120.03214 * 180.02562 * 12 11 10 34 34 H 0.97003 * 120.00308 * 215.09646 * 14 13 12 35 35 H 0.96988 * 120.00159 * 0.27447 * 17 15 14 36 36 H 1.08991 * 113.61656 * 254.53479 * 20 18 17 37 37 H 1.09007 * 113.61158 * 25.43429 * 20 18 17 38 38 H 0.96698 * 117.00435 * 180.02562 * 25 23 21 39 39 H 1.09006 * 113.61305 * 334.56515 * 26 18 17 40 40 H 1.08997 * 113.61605 * 105.46760 * 26 18 17 41 41 H 1.07998 * 120.03767 * 179.74274 * 27 13 12 42 42 H 1.07992 * 119.96822 * 180.27620 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4002 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 6 4.0139 -2.6147 -0.0010 11 6 4.2435 -3.2655 -1.1994 12 6 4.7034 -4.5677 -1.2026 13 6 4.9349 -5.2238 -0.0009 14 7 5.4005 -6.5436 -0.0007 15 6 6.2574 -6.9559 -0.9557 16 8 6.5605 -6.2076 -1.8648 17 7 6.7825 -8.1960 -0.9001 18 6 7.7186 -8.6421 -1.9350 19 1 8.2247 -7.8150 -2.4328 20 6 8.6712 -9.7544 -1.4658 21 6 8.4736 -10.3985 -2.8482 22 1 9.1860 -10.0523 -3.5970 23 6 8.3532 -11.9000 -2.8030 24 8 8.4147 -12.4794 -1.7445 25 8 8.1766 -12.5937 -3.9385 26 6 7.1186 -9.6733 -2.9052 27 6 4.6979 -4.5696 1.2009 28 6 4.2433 -3.2653 1.1974 29 1 -0.4851 0.8401 0.0004 30 1 3.8752 -0.6803 0.8889 31 1 3.8745 -0.6799 -0.8911 32 1 4.0629 -2.7548 -2.1337 33 1 4.8829 -5.0753 -2.1389 34 1 5.1063 -7.1616 0.6867 35 1 6.5406 -8.7930 -0.1750 36 1 9.6895 -9.4101 -1.2861 37 1 8.2742 -10.3518 -0.6450 38 1 8.1045 -13.5547 -3.8592 39 1 6.2972 -10.2486 -2.4779 40 1 6.8837 -9.2635 -3.8875 41 1 4.8730 -5.0785 2.1372 42 1 4.0630 -2.7544 2.1316 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601068800.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:15 Heat of formation + Delta-G solvation = -100.680345 kcal Electronic energy + Delta-G solvation = -24905.525751 eV Core-core repulsion = 21042.981198 eV Total energy + Delta-G solvation = -3862.544553 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.97067 -41.38510 -39.96400 -38.94897 -37.05690 -36.20938 -35.02884 -34.44127 -32.36528 -31.73000 -28.90939 -27.57977 -26.77710 -24.90980 -23.79937 -23.18489 -22.06799 -21.61522 -20.70938 -19.44157 -19.19862 -18.93989 -18.52642 -17.89230 -16.84418 -16.78014 -16.59499 -16.26170 -15.97007 -15.87840 -15.52040 -15.20050 -14.83903 -14.36970 -14.25942 -14.11995 -13.89232 -13.63640 -13.53114 -13.42776 -13.17283 -12.59376 -12.49934 -12.45781 -12.30818 -12.19846 -11.84418 -11.79928 -11.78479 -11.61634 -11.42040 -11.20597 -10.88191 -10.76395 -10.11448 -9.72619 -8.77561 -8.27508 -6.32146 0.50819 0.61267 1.15130 1.38692 1.39598 1.52034 1.54012 2.05536 2.18707 2.37413 3.01118 3.06690 3.21903 3.31069 3.39318 3.73836 3.91092 4.08232 4.19401 4.35380 4.43609 4.51410 4.61981 4.64007 4.67616 4.68816 4.75610 4.89661 4.97626 5.08032 5.09644 5.12984 5.29360 5.42132 5.47405 5.52367 5.59336 5.61987 5.68449 5.98094 6.04902 6.20777 6.32593 6.73966 6.98358 6.99437 7.31067 7.49440 8.88782 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.040130 B = 0.001913 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.571068 B =14631.300103 C =14766.990676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.006 3.994 3 Si 0.950 3.050 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.245 1.245 7 C -0.517 4.517 8 H 0.029 0.971 9 C 0.021 3.979 10 C -0.077 4.077 11 C -0.120 4.120 12 C -0.126 4.126 13 C 0.138 3.862 14 N -0.670 5.670 15 C 0.700 3.300 16 O -0.613 6.613 17 N -0.715 5.715 18 C 0.139 3.861 19 H 0.114 0.886 20 C -0.117 4.117 21 C -0.104 4.104 22 H 0.151 0.849 23 C 0.495 3.505 24 O -0.549 6.549 25 O -0.514 6.514 26 C -0.133 4.133 27 C -0.132 4.132 28 C -0.113 4.113 29 H 0.267 0.733 30 H 0.034 0.966 31 H 0.025 0.975 32 H 0.114 0.886 33 H 0.128 0.872 34 H 0.423 0.577 35 H 0.414 0.586 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.426 0.574 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.158 0.842 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.450 -25.503 -2.701 32.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.190 4.190 3 Si 0.773 3.227 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.168 1.168 7 C -0.555 4.555 8 H 0.047 0.953 9 C -0.016 4.016 10 C -0.077 4.077 11 C -0.139 4.139 12 C -0.146 4.146 13 C 0.043 3.957 14 N -0.318 5.318 15 C 0.400 3.600 16 O -0.492 6.492 17 N -0.370 5.370 18 C 0.033 3.967 19 H 0.132 0.868 20 C -0.155 4.155 21 C -0.124 4.124 22 H 0.169 0.831 23 C 0.339 3.661 24 O -0.439 6.439 25 O -0.327 6.327 26 C -0.172 4.172 27 C -0.152 4.152 28 C -0.131 4.131 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.043 0.957 32 H 0.132 0.868 33 H 0.146 0.854 34 H 0.262 0.738 35 H 0.251 0.749 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.288 0.712 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.175 0.825 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 20.670 -24.542 -3.268 32.253 hybrid contribution -0.752 -0.389 0.435 0.952 sum 19.918 -24.932 -2.833 32.037 Atomic orbital electron populations 1.70059 1.08246 1.28188 1.52466 1.25981 0.95624 1.03356 0.94082 0.85658 0.79588 0.78202 0.79230 1.19321 1.20756 1.16801 1.21175 0.90813 0.93003 1.50529 0.95279 1.18644 0.94294 0.91206 0.97484 1.20179 0.96473 0.97290 0.93793 1.20987 1.00044 0.95068 0.97823 1.21159 1.00150 0.95033 0.98244 1.17381 0.99866 0.84805 0.93613 1.42281 1.47106 1.10687 1.31763 1.16142 0.78980 0.82783 0.82049 1.90925 1.65722 1.55567 1.36995 1.44931 1.48324 1.13106 1.30663 1.22373 0.89959 0.95687 0.88637 0.86847 1.23335 1.01591 0.94914 0.95652 1.22337 1.01988 0.85789 1.02249 0.83097 1.23449 0.70387 0.91531 0.80703 1.90721 1.48021 1.72311 1.32876 1.84527 1.83562 1.28144 1.36458 1.23462 0.95300 0.96569 1.01836 1.21022 1.02800 0.94204 0.97160 1.21009 0.99559 0.94914 0.97661 0.92417 0.94744 0.95664 0.86840 0.85426 0.73848 0.74892 0.88146 0.88181 0.71191 0.89128 0.89293 0.82476 0.85196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.99 13.96 21.45 0.30 -59.69 16 2 C 0.01 0.38 5.47 84.65 0.46 0.84 16 3 Si 0.95 44.48 27.47 68.60 1.88 46.36 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 6 H -0.24 -10.58 6.54 99.48 0.65 -9.93 16 7 C -0.52 -30.43 9.65 25.60 0.25 -30.18 16 8 H 0.03 1.91 7.98 -2.91 -0.02 1.88 16 9 C 0.02 1.02 4.17 29.10 0.12 1.14 16 10 C -0.08 -3.31 5.07 -19.84 -0.10 -3.41 16 11 C -0.12 -4.96 9.69 22.25 0.22 -4.75 16 12 C -0.13 -4.59 8.70 22.39 0.19 -4.40 16 13 C 0.14 4.19 6.30 38.15 0.24 4.43 16 14 N -0.67 -14.41 5.34 -317.18 -1.70 -16.11 16 15 C 0.70 16.20 8.41 179.05 1.51 17.70 16 16 O -0.61 -19.78 13.38 -3.99 -0.05 -19.83 16 17 N -0.72 -9.88 5.36 -455.30 -2.44 -12.32 16 18 C 0.14 1.68 4.24 45.51 0.19 1.87 16 19 H 0.11 1.73 7.46 -2.39 -0.02 1.71 16 20 C -0.12 -0.97 7.16 31.12 0.22 -0.75 16 21 C -0.10 -0.84 4.26 -11.01 -0.05 -0.89 16 22 H 0.15 0.63 8.14 -2.39 -0.02 0.61 16 23 C 0.50 5.75 7.85 71.24 0.56 6.31 16 24 O -0.55 -9.84 16.66 21.96 0.37 -9.47 16 25 O -0.51 -4.13 13.42 -51.45 -0.69 -4.82 16 26 C -0.13 -1.35 7.43 31.12 0.23 -1.12 16 27 C -0.13 -3.85 9.97 22.39 0.22 -3.63 16 28 C -0.11 -4.13 9.69 22.25 0.22 -3.92 16 29 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 30 H 0.03 1.61 7.14 -2.39 -0.02 1.59 16 31 H 0.03 1.20 7.51 -2.39 -0.02 1.18 16 32 H 0.11 4.66 8.06 -2.91 -0.02 4.63 16 33 H 0.13 4.74 6.22 -2.91 -0.02 4.72 16 34 H 0.42 5.55 8.84 -92.71 -0.82 4.73 16 35 H 0.41 3.19 8.75 -92.72 -0.81 2.38 16 36 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.10 0.93 7.41 -2.38 -0.02 0.91 16 38 H 0.43 0.18 9.10 -74.06 -0.67 -0.49 16 39 H 0.09 0.95 8.09 -2.38 -0.02 0.93 16 40 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.16 3.24 8.06 -2.91 -0.02 3.21 16 42 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -82.11 359.81 0.89 -81.22 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -1.27 Total: 15.40 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: 4.48 Total: -20.74 kcal Atomic # 7 Polarization: -84.28 SS G_CDS: -3.84 Total: -88.12 kcal Atomic # 8 Polarization: -33.75 SS G_CDS: -0.38 Total: -34.12 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.88 Total: 46.36 kcal Total: -82.11 0.89 -81.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068800.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.456 kcal (2) G-P(sol) polarization free energy of solvation -82.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds