Wall clock time and date at job start Tue Mar 31 2020 12:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31425 * 1 3 3 Si 1.86797 * 119.99907 * 2 1 4 4 H 1.48503 * 109.47034 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47208 * 299.99931 * 3 2 1 6 6 H 1.48501 * 109.47303 * 59.99814 * 3 2 1 7 7 C 1.38970 * 119.99611 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99194 * 202.48711 * 7 2 1 9 9 N 1.36972 * 120.00255 * 22.76900 * 7 2 1 10 10 C 1.46503 * 119.99997 * 6.75515 * 9 7 2 11 11 C 1.50697 * 109.47090 * 269.93668 * 10 9 7 12 12 O 1.20831 * 120.00217 * 359.97438 * 11 10 9 13 13 O 1.34226 * 119.99774 * 180.02562 * 11 10 9 14 14 C 1.34776 * 119.99881 * 186.76248 * 9 7 2 15 15 O 1.21653 * 119.99890 * 354.33842 * 14 9 7 16 16 C 1.47190 * 120.00149 * 174.34363 * 14 9 7 17 17 C 1.46714 * 127.01429 * 353.80768 * 16 14 9 18 18 C 1.34445 * 106.38896 * 179.97438 * 17 16 14 19 19 C 1.50705 * 125.46031 * 180.02562 * 18 17 16 20 20 C 1.52998 * 117.49790 * 33.71740 * 19 18 17 21 21 C 1.53002 * 117.49699 * 325.05925 * 19 18 17 22 22 N 1.36428 * 109.08437 * 0.02562 * 18 17 16 23 23 H 0.97003 * 124.81540 * 180.02562 * 22 18 17 24 24 C 1.34699 * 110.36249 * 359.74829 * 22 18 17 25 25 C 1.50701 * 125.90122 * 180.25924 * 24 22 18 26 26 C 1.52999 * 117.49809 * 8.92502 * 25 24 22 27 27 C 1.53000 * 117.49605 * 300.26532 * 25 24 22 28 28 H 0.97003 * 119.99739 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.46600 * 29.93841 * 10 9 7 30 30 H 1.08999 * 109.46903 * 149.93693 * 10 9 7 31 31 H 0.96702 * 117.00428 * 179.97438 * 13 11 10 32 32 H 1.07999 * 126.80943 * 359.95939 * 17 16 14 33 33 H 1.09002 * 115.54848 * 179.39419 * 19 18 17 34 34 H 1.09003 * 117.49744 * 0.02562 * 20 19 18 35 35 H 1.09003 * 117.49669 * 145.02013 * 20 19 18 36 36 H 1.09001 * 117.49820 * 214.97928 * 21 19 18 37 37 H 1.09000 * 117.49904 * 0.02562 * 21 19 18 38 38 H 1.08996 * 115.55364 * 154.59511 * 25 24 22 39 39 H 1.08997 * 117.49948 * 0.02562 * 26 25 24 40 40 H 1.09001 * 117.49747 * 145.02330 * 26 25 24 41 41 H 1.09002 * 117.49927 * 214.97784 * 27 25 24 42 42 H 1.08994 * 117.50135 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3464 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0090 -1.2036 0.0005 8 1 3.0274 -1.2389 0.3583 9 7 1.4042 -2.3438 -0.4580 10 6 0.0821 -2.2703 -1.0850 11 6 -0.9831 -2.4322 -0.0315 12 8 -0.6702 -2.5931 1.1245 13 8 -2.2796 -2.3989 -0.3774 14 6 2.0252 -3.5333 -0.3323 15 8 3.1638 -3.5830 0.0934 16 6 1.3260 -4.7722 -0.7101 17 6 -0.0772 -4.9054 -1.1172 18 6 -0.2771 -6.2111 -1.3678 19 6 -1.5771 -6.8257 -1.8190 20 6 -2.4753 -5.9882 -2.7315 21 6 -2.8717 -6.2214 -1.2715 22 7 0.8854 -6.8905 -1.1483 23 1 0.9973 -7.8475 -1.2610 24 6 1.8572 -6.0431 -0.7587 25 6 3.2788 -6.4199 -0.4299 26 6 3.7211 -7.8505 -0.7439 27 6 3.4998 -7.4186 0.7079 28 1 -0.4850 0.8401 -0.0004 29 1 -0.0346 -1.3033 -1.5742 30 1 -0.0141 -3.0655 -1.8243 31 1 -2.9266 -2.5076 0.3331 32 1 -0.8054 -4.1120 -1.1990 33 1 -1.5552 -7.9027 -1.9851 34 1 -2.1258 -4.9928 -3.0059 35 1 -3.0447 -6.5143 -3.4978 36 1 -3.7018 -6.9009 -1.0779 37 1 -2.7833 -5.3791 -0.5854 38 1 4.0160 -5.6266 -0.5536 39 1 2.9840 -8.5190 -1.1886 40 1 4.7494 -7.9984 -1.0737 41 1 4.3826 -7.2826 1.3326 42 1 2.6170 -7.8027 1.2189 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601069287.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:44 Heat of formation + Delta-G solvation = 6.310645 kcal Electronic energy + Delta-G solvation = -27959.963398 eV Core-core repulsion = 24102.058323 eV Total energy + Delta-G solvation = -3857.905075 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.14878 -39.22407 -37.80768 -37.27945 -36.13670 -35.09925 -34.35835 -31.94247 -30.40977 -28.66292 -27.60984 -25.17645 -23.58158 -22.34628 -22.32827 -22.27411 -20.98406 -20.63847 -19.66856 -17.97124 -17.31890 -17.03226 -16.72994 -15.62840 -15.52748 -15.42356 -14.87968 -14.66168 -14.22598 -14.19624 -14.12933 -13.90280 -13.26553 -12.91532 -12.54171 -12.44087 -11.87486 -11.67918 -11.54532 -11.52410 -11.47113 -11.44263 -11.13674 -10.93481 -10.69851 -10.48369 -10.36827 -10.27869 -10.24582 -10.19224 -10.11765 -9.52004 -8.92127 -8.44368 -8.26270 -7.88480 -7.42394 -6.39952 -3.74351 2.23965 2.68270 3.21555 3.28535 3.33947 3.37842 3.60855 3.95693 4.05225 4.07884 4.25414 4.55047 4.67287 4.76091 4.87777 4.92226 5.04379 5.05001 5.11549 5.17274 5.31166 5.44799 5.64597 5.65183 5.74059 5.80974 5.93615 5.99483 6.03869 6.09750 6.13021 6.17855 6.25074 6.42228 6.57129 6.69576 6.79775 7.22354 7.37470 7.58275 7.61712 7.78858 8.11162 8.48178 9.15917 9.18249 9.42373 10.00893 10.67714 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011959 B = 0.005943 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.698665 B = 4709.953255 C = 6604.588485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.024 3.976 3 Si 0.928 3.072 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.284 1.284 7 C -0.291 4.291 8 H 0.112 0.888 9 N -0.424 5.424 10 C 0.127 3.873 11 C 0.495 3.505 12 O -0.505 6.505 13 O -0.537 6.537 14 C 0.528 3.472 15 O -0.584 6.584 16 C -0.180 4.180 17 C -0.187 4.187 18 C 0.040 3.960 19 C -0.092 4.092 20 C -0.165 4.165 21 C -0.166 4.166 22 N -0.548 5.548 23 H 0.405 0.595 24 C 0.105 3.895 25 C -0.069 4.069 26 C -0.189 4.189 27 C -0.168 4.168 28 H 0.270 0.730 29 H 0.129 0.871 30 H 0.095 0.905 31 H 0.389 0.611 32 H 0.155 0.845 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.143 0.857 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.069 -13.448 -6.388 15.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.177 4.177 3 Si 0.755 3.245 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.210 1.210 7 C -0.418 4.418 8 H 0.129 0.871 9 N -0.142 5.142 10 C 0.001 3.999 11 C 0.336 3.664 12 O -0.391 6.391 13 O -0.348 6.348 14 C 0.319 3.681 15 O -0.469 6.469 16 C -0.189 4.189 17 C -0.211 4.211 18 C -0.069 4.069 19 C -0.111 4.111 20 C -0.202 4.202 21 C -0.204 4.204 22 N -0.144 5.144 23 H 0.241 0.759 24 C -0.011 4.011 25 C -0.088 4.088 26 C -0.227 4.227 27 C -0.206 4.206 28 H 0.081 0.919 29 H 0.147 0.853 30 H 0.112 0.888 31 H 0.245 0.755 32 H 0.172 0.828 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.120 0.880 38 H 0.161 0.839 39 H 0.102 0.898 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.232 -13.396 -6.168 15.343 hybrid contribution -0.426 0.414 0.666 0.892 sum -4.658 -12.983 -5.502 14.850 Atomic orbital electron populations 1.69811 1.06075 1.27683 1.49009 1.25188 0.95345 0.99888 0.97282 0.85828 0.80029 0.80986 0.77676 1.19118 1.20562 1.20994 1.19830 0.98864 0.83631 1.39515 0.87063 1.43279 1.13313 1.06213 1.51366 1.21559 0.80997 1.05486 0.91880 1.23742 0.81434 0.70413 0.90840 1.90604 1.82033 1.45094 1.21326 1.84549 1.18594 1.86555 1.45092 1.16986 0.86602 0.81783 0.82715 1.90561 1.18644 1.86321 1.51391 1.20684 0.93756 0.93110 1.11392 1.22538 0.96207 0.94940 1.07453 1.19165 0.86712 0.91646 1.09395 1.20230 0.87486 0.97723 1.05694 1.23084 1.02080 1.01722 0.93334 1.23079 0.96548 1.03428 0.97326 1.41167 1.08688 1.09338 1.55181 0.75863 1.19369 0.89217 0.88846 1.03669 1.20702 0.92171 0.93312 1.02626 1.23007 1.02450 0.97816 0.99392 1.22983 1.03426 1.03033 0.91117 0.91940 0.85312 0.88803 0.75517 0.82761 0.87661 0.87846 0.88545 0.88599 0.88042 0.83907 0.89799 0.88157 0.88084 0.89171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.49 8.93 55.50 0.50 -22.99 16 2 C 0.02 0.64 4.99 -17.45 -0.09 0.56 16 3 Si 0.93 20.90 29.61 -169.99 -5.03 15.87 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 7 C -0.29 -8.26 9.47 -14.98 -0.14 -8.40 16 8 H 0.11 3.30 7.27 -52.49 -0.38 2.92 16 9 N -0.42 -11.30 2.11 -117.39 -0.25 -11.54 16 10 C 0.13 2.95 4.72 -5.19 -0.02 2.93 16 11 C 0.50 11.42 4.10 36.00 0.15 11.57 16 12 O -0.51 -13.79 17.07 -18.75 -0.32 -14.11 16 13 O -0.54 -9.85 13.20 -39.25 -0.52 -10.37 16 14 C 0.53 13.84 7.60 -12.63 -0.10 13.74 16 15 O -0.58 -16.47 14.62 5.23 0.08 -16.40 16 16 C -0.18 -3.92 6.10 -102.99 -0.63 -4.55 16 17 C -0.19 -3.51 7.20 -37.50 -0.27 -3.78 16 18 C 0.04 0.62 6.82 -81.89 -0.56 0.06 16 19 C -0.09 -1.07 6.33 -91.77 -0.58 -1.65 16 20 C -0.16 -1.74 10.03 -26.69 -0.27 -2.01 16 21 C -0.17 -1.83 10.04 -26.69 -0.27 -2.10 16 22 N -0.55 -7.95 5.80 -5.19 -0.03 -7.98 16 23 H 0.41 4.42 7.85 -40.82 -0.32 4.10 16 24 C 0.10 1.90 6.73 -81.48 -0.55 1.35 16 25 C -0.07 -1.14 5.59 -91.77 -0.51 -1.65 16 26 C -0.19 -2.22 10.13 -26.69 -0.27 -2.50 16 27 C -0.17 -2.28 10.24 -26.69 -0.27 -2.56 16 28 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 29 H 0.13 3.09 6.08 -51.93 -0.32 2.78 16 30 H 0.09 1.92 4.63 -51.93 -0.24 1.68 16 31 H 0.39 5.58 9.10 45.56 0.41 6.00 16 32 H 0.16 2.90 3.51 -52.49 -0.18 2.72 16 33 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.10 1.21 7.90 -51.93 -0.41 0.80 16 35 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.10 1.30 7.93 -51.93 -0.41 0.89 16 38 H 0.14 2.70 6.81 -51.93 -0.35 2.35 16 39 H 0.08 0.83 7.10 -51.93 -0.37 0.46 16 40 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 348.11 15.07 5.25 5.25 Total: -1.00 -34.87 348.11 -8.95 -43.82 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: -4.24 Total: 17.44 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -4.38 Total: 1.01 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: 0.22 Total: -42.52 kcal Atomic # 8 Polarization: -40.11 SS G_CDS: -0.76 Total: -40.87 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.87 -8.95 -43.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069287.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.135 kcal (2) G-P(sol) polarization free energy of solvation -34.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds