Wall clock time and date at job start Tue Mar 31 2020 11:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 119.99821 * 2 1 4 4 H 1.48502 * 109.46967 * 273.86200 * 3 2 1 5 5 H 1.48497 * 109.46979 * 33.86297 * 3 2 1 6 6 H 1.48499 * 109.47153 * 153.86488 * 3 2 1 7 7 C 1.38809 * 120.00381 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99751 * 339.03277 * 7 2 1 9 9 N 1.36936 * 119.99944 * 159.02230 * 7 2 1 10 10 C 1.46493 * 120.00601 * 321.39991 * 9 7 2 11 11 C 1.52997 * 109.47440 * 270.00027 * 10 9 7 12 12 C 1.50699 * 109.47403 * 179.97438 * 11 10 9 13 13 O 1.20823 * 119.99723 * 0.02562 * 12 11 10 14 14 O 1.34233 * 120.00061 * 179.97438 * 12 11 10 15 15 C 1.46508 * 119.99809 * 141.40018 * 9 7 2 16 16 H 1.08993 * 110.53954 * 183.83858 * 15 9 7 17 17 C 1.54629 * 110.48294 * 306.45262 * 15 9 7 18 18 C 1.54487 * 101.76091 * 143.47474 * 17 15 9 19 19 N 1.46753 * 105.47531 * 334.58170 * 18 17 15 20 20 C 1.39930 * 124.34954 * 197.03465 * 19 18 17 21 21 C 1.38877 * 120.06906 * 184.77226 * 20 19 18 22 22 C 1.38115 * 119.92318 * 179.72753 * 21 20 19 23 23 C 1.38279 * 120.07406 * 0.52707 * 22 21 20 24 24 C 1.38281 * 120.13931 * 359.77126 * 23 22 21 25 25 C 1.38114 * 120.07116 * 359.95408 * 24 23 22 26 26 C 1.34420 * 111.30472 * 17.01832 * 19 18 17 27 27 O 1.21287 * 124.94843 * 179.55720 * 26 19 18 28 28 H 0.97000 * 119.99958 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.46713 * 29.99657 * 10 9 7 30 30 H 1.08998 * 109.47319 * 149.99677 * 10 9 7 31 31 H 1.08997 * 109.47131 * 299.99791 * 11 10 9 32 32 H 1.08998 * 109.47150 * 59.99547 * 11 10 9 33 33 H 0.96695 * 116.99823 * 179.97438 * 14 12 11 34 34 H 1.09002 * 110.97157 * 261.58956 * 17 15 9 35 35 H 1.08997 * 110.97258 * 25.35853 * 17 15 9 36 36 H 1.09006 * 110.24057 * 215.57736 * 18 17 15 37 37 H 1.09001 * 110.31662 * 93.62561 * 18 17 15 38 38 H 1.07994 * 120.03724 * 359.97438 * 21 20 19 39 39 H 1.07997 * 119.96113 * 180.30095 * 22 21 20 40 40 H 1.07999 * 119.93249 * 179.75165 * 23 22 21 41 41 H 1.08003 * 119.96651 * 179.97438 * 24 23 22 42 42 H 1.08006 * 120.03271 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4159 2.0936 -1.3969 5 1 1.4908 2.6277 0.7801 6 1 3.5862 1.4181 0.6167 7 6 2.0103 -1.2021 0.0005 8 1 1.5239 -2.1063 0.3356 9 7 3.3116 -1.2415 -0.4240 10 6 3.7338 -0.4296 -1.5680 11 6 3.5573 -1.2342 -2.8573 12 6 3.9911 -0.3988 -4.0341 13 8 4.4000 0.7246 -3.8595 14 8 3.9241 -0.9032 -5.2763 15 6 4.2816 -2.0956 0.2659 16 1 5.2783 -1.9581 -0.1532 17 6 4.2858 -1.7939 1.7825 18 6 4.5068 -3.2002 2.3826 19 7 3.9966 -4.1396 1.3772 20 6 3.6860 -5.4796 1.6343 21 6 3.3027 -6.3168 0.5947 22 6 3.0022 -7.6403 0.8510 23 6 3.0723 -8.1292 2.1426 24 6 3.4477 -7.2965 3.1808 25 6 3.7549 -5.9735 2.9303 26 6 3.8657 -3.5475 0.1775 27 8 3.4720 -4.0973 -0.8294 28 1 -0.4850 0.8400 0.0004 29 1 3.1253 0.4734 -1.6170 30 1 4.7823 -0.1553 -1.4516 31 1 4.1658 -2.1372 -2.8083 32 1 2.5088 -1.5085 -2.9737 33 1 4.2131 -0.3296 -5.9991 34 1 5.1053 -1.1247 2.0448 35 1 3.3290 -1.3800 2.1006 36 1 3.9496 -3.3047 3.3137 37 1 5.5684 -3.3746 2.5575 38 1 3.2434 -5.9345 -0.4135 39 1 2.7088 -8.2932 0.0423 40 1 2.8329 -9.1635 2.3411 41 1 3.5010 -7.6812 4.1886 42 1 4.0484 -5.3237 3.7416 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601072495.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:42 Heat of formation + Delta-G solvation = -83.043744 kcal Electronic energy + Delta-G solvation = -27171.504281 eV Core-core repulsion = 23309.724509 eV Total energy + Delta-G solvation = -3861.779773 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.00485 -41.24949 -39.57750 -37.93596 -37.34631 -36.99067 -34.08777 -33.62071 -31.82724 -31.54137 -29.56505 -28.28361 -26.63350 -24.67002 -24.05503 -23.28065 -22.11283 -21.68004 -20.67089 -19.25708 -18.68923 -18.39813 -17.69768 -17.57639 -17.44573 -17.17650 -16.81220 -16.16263 -15.74191 -15.36665 -15.06809 -14.93165 -14.85161 -14.59690 -14.43414 -14.32181 -14.09298 -13.84180 -13.57915 -13.52263 -13.19814 -12.82612 -12.71171 -12.56237 -12.52271 -12.33224 -12.07447 -11.93006 -11.79865 -11.66945 -11.44526 -11.04375 -10.82512 -10.54250 -9.85844 -8.89913 -8.80432 -8.24112 -5.70325 0.37079 0.49481 1.17059 1.36958 1.42951 1.53421 1.63449 1.99897 2.11503 2.39503 2.96009 3.01749 3.19826 3.52572 3.79205 4.00188 4.04770 4.08479 4.14818 4.16589 4.23165 4.35508 4.47874 4.53202 4.57302 4.60146 4.63281 4.68601 4.80080 4.85581 5.04265 5.13945 5.16235 5.33184 5.41303 5.52246 5.57103 5.67021 5.71336 5.86598 6.12142 6.16903 6.23713 6.81633 6.99893 7.18811 7.49422 7.88429 8.94340 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013954 B = 0.004427 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.051867 B = 6322.770935 C = 7342.047972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.005 4.005 3 Si 0.938 3.062 4 H -0.288 1.288 5 H -0.308 1.308 6 H -0.235 1.235 7 C -0.249 4.249 8 H 0.028 0.972 9 N -0.583 5.583 10 C 0.145 3.855 11 C -0.125 4.125 12 C 0.493 3.507 13 O -0.549 6.549 14 O -0.512 6.512 15 C 0.138 3.862 16 H 0.130 0.870 17 C -0.136 4.136 18 C 0.102 3.898 19 N -0.565 5.565 20 C 0.150 3.850 21 C -0.194 4.194 22 C -0.101 4.101 23 C -0.153 4.153 24 C -0.090 4.090 25 C -0.165 4.165 26 C 0.496 3.504 27 O -0.545 6.545 28 H 0.265 0.735 29 H 0.044 0.956 30 H 0.082 0.918 31 H 0.112 0.888 32 H 0.086 0.914 33 H 0.425 0.575 34 H 0.122 0.878 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.112 0.888 38 H 0.122 0.878 39 H 0.134 0.866 40 H 0.150 0.850 41 H 0.159 0.841 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.606 -9.587 4.865 17.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.203 4.203 3 Si 0.766 3.234 4 H -0.216 1.216 5 H -0.237 1.237 6 H -0.158 1.158 7 C -0.378 4.378 8 H 0.046 0.954 9 N -0.303 5.303 10 C 0.020 3.980 11 C -0.165 4.165 12 C 0.336 3.664 13 O -0.440 6.440 14 O -0.325 6.325 15 C 0.028 3.972 16 H 0.147 0.853 17 C -0.175 4.175 18 C -0.019 4.019 19 N -0.289 5.289 20 C 0.055 3.945 21 C -0.215 4.215 22 C -0.120 4.120 23 C -0.172 4.172 24 C -0.109 4.109 25 C -0.185 4.185 26 C 0.284 3.716 27 O -0.422 6.422 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.130 0.870 32 H 0.104 0.896 33 H 0.287 0.713 34 H 0.140 0.860 35 H 0.091 0.909 36 H 0.112 0.888 37 H 0.130 0.870 38 H 0.140 0.860 39 H 0.152 0.848 40 H 0.168 0.832 41 H 0.176 0.824 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 13.250 -9.687 4.701 17.074 hybrid contribution -0.527 1.222 -1.034 1.685 sum 12.723 -8.465 3.667 15.716 Atomic orbital electron populations 1.69993 1.07904 1.27664 1.52936 1.25984 0.95417 1.01030 0.97840 0.85966 0.80416 0.79962 0.77011 1.21644 1.23663 1.15806 1.18181 0.86605 0.92224 1.40786 0.95395 1.43911 1.06384 1.49931 1.30106 1.21198 0.99705 0.92560 0.84568 1.21994 1.03973 1.00030 0.90535 1.23651 0.72780 0.85424 0.84501 1.90670 1.45206 1.21556 1.86586 1.84555 1.79669 1.50885 1.17414 1.21406 0.94589 0.85973 0.95204 0.85264 1.23028 1.04953 0.96312 0.93231 1.22486 1.01301 0.86783 0.91345 1.46047 1.61593 1.08807 1.12423 1.18214 0.98149 0.82916 0.95173 1.21645 1.04633 0.95228 0.99977 1.21262 0.98244 0.94015 0.98469 1.21441 1.02151 1.01410 0.92172 1.21356 0.96662 0.92266 1.00577 1.21098 1.05817 0.97716 0.93892 1.22666 0.75742 0.91288 0.81910 1.90488 1.46182 1.70735 1.34786 0.92637 0.93846 0.89992 0.86972 0.89558 0.71316 0.85997 0.90897 0.88753 0.86962 0.86030 0.84763 0.83243 0.82351 0.83440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.88 13.97 21.65 0.30 -57.58 16 2 C 0.00 -0.28 5.32 84.86 0.45 0.17 16 3 Si 0.94 44.58 25.06 68.60 1.72 46.30 16 4 H -0.29 -14.09 6.62 99.48 0.66 -13.43 16 5 H -0.31 -14.89 7.11 99.48 0.71 -14.18 16 6 H -0.24 -9.93 7.11 99.48 0.71 -9.22 16 7 C -0.25 -13.39 8.24 84.03 0.69 -12.70 16 8 H 0.03 1.78 7.81 -2.91 -0.02 1.76 16 9 N -0.58 -25.40 2.09 -678.08 -1.41 -26.81 16 10 C 0.14 5.93 3.77 86.38 0.33 6.26 16 11 C -0.13 -4.76 6.13 29.85 0.18 -4.58 16 12 C 0.49 16.90 8.33 71.24 0.59 17.49 16 13 O -0.55 -21.32 16.74 21.97 0.37 -20.96 16 14 O -0.51 -13.72 13.42 -51.44 -0.69 -14.41 16 15 C 0.14 4.81 3.47 44.99 0.16 4.96 16 16 H 0.13 3.59 7.84 -2.39 -0.02 3.57 16 17 C -0.14 -3.82 6.74 31.65 0.21 -3.61 16 18 C 0.10 2.36 6.49 86.84 0.56 2.92 16 19 N -0.57 -18.43 3.14 -627.68 -1.97 -20.40 16 20 C 0.15 4.79 6.60 38.15 0.25 5.05 16 21 C -0.19 -6.72 9.29 22.39 0.21 -6.52 16 22 C -0.10 -2.75 10.04 22.25 0.22 -2.53 16 23 C -0.15 -3.27 10.04 22.29 0.22 -3.04 16 24 C -0.09 -1.82 10.04 22.25 0.22 -1.59 16 25 C -0.16 -3.97 9.42 22.39 0.21 -3.76 16 26 C 0.50 19.44 6.89 87.90 0.61 20.04 16 27 O -0.55 -25.34 14.80 -3.05 -0.05 -25.39 16 28 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 29 H 0.04 2.03 3.22 -2.38 -0.01 2.02 16 30 H 0.08 2.88 7.88 -2.39 -0.02 2.86 16 31 H 0.11 3.99 8.14 -2.39 -0.02 3.98 16 32 H 0.09 3.75 8.14 -2.39 -0.02 3.73 16 33 H 0.43 6.86 9.10 -74.06 -0.67 6.19 16 34 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.07 2.60 6.96 -2.39 -0.02 2.58 16 36 H 0.09 1.91 7.26 -2.38 -0.02 1.89 16 37 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.12 5.00 5.24 -2.91 -0.02 4.99 16 39 H 0.13 3.11 8.06 -2.91 -0.02 3.08 16 40 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 41 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 42 H 0.15 2.72 6.76 -2.91 -0.02 2.70 16 Total: -1.00 -78.86 347.97 3.74 -75.12 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: 0.34 Total: 25.56 kcal Atomic # 6 Polarization: 13.45 SS G_CDS: 5.13 Total: 18.57 kcal Atomic # 7 Polarization: -101.71 SS G_CDS: -3.08 Total: -104.79 kcal Atomic # 8 Polarization: -60.38 SS G_CDS: -0.37 Total: -60.75 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.72 Total: 46.30 kcal Total: -78.86 3.74 -75.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072495.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.924 kcal (2) G-P(sol) polarization free energy of solvation -78.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds