Wall clock time and date at job start Tue Mar 31 2020 12:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86796 * 119.99729 * 2 1 4 4 H 1.48506 * 109.46913 * 269.99602 * 3 2 1 5 5 H 1.48502 * 109.47406 * 29.99412 * 3 2 1 6 6 H 1.48495 * 109.47321 * 149.99842 * 3 2 1 7 7 C 1.40028 * 119.99951 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99498 * 180.02562 * 7 2 1 9 9 C 1.41331 * 120.00439 * 0.02562 * 7 2 1 10 10 C 1.40614 * 119.79009 * 180.02562 * 9 7 2 11 11 C 1.38302 * 119.12755 * 180.02562 * 10 9 7 12 12 C 1.38701 * 118.67281 * 0.02562 * 11 10 9 13 13 C 1.39630 * 119.49192 * 359.97438 * 12 11 10 14 14 N 1.39271 * 119.57112 * 180.02562 * 13 12 11 15 15 C 1.34779 * 119.99864 * 185.34503 * 14 13 12 16 16 O 1.21273 * 120.00324 * 354.86827 * 15 14 13 17 17 C 1.50701 * 119.99821 * 174.86577 * 15 14 13 18 18 H 1.09001 * 109.47045 * 300.00002 * 17 15 14 19 19 C 1.53001 * 109.47221 * 60.00109 * 17 15 14 20 20 C 1.52998 * 109.46602 * 60.00235 * 19 17 15 21 21 C 1.52993 * 109.47641 * 60.00078 * 20 19 17 22 22 C 1.53005 * 109.46985 * 299.99988 * 21 20 19 23 23 H 1.09000 * 109.46777 * 299.99486 * 22 21 20 24 24 C 1.50701 * 109.47241 * 180.02562 * 22 21 20 25 25 O 1.20829 * 119.99880 * 240.00303 * 24 22 21 26 26 O 1.34234 * 120.00123 * 59.99532 * 24 22 21 27 27 C 1.52995 * 109.47097 * 59.99901 * 22 21 20 28 28 N 1.31933 * 120.85402 * 0.27583 * 13 12 11 29 29 H 0.96999 * 120.00132 * 0.02562 * 1 2 3 30 30 H 1.07996 * 120.43175 * 359.97438 * 10 9 7 31 31 H 1.08000 * 120.66515 * 179.97438 * 11 10 9 32 32 H 1.07997 * 120.25488 * 179.97438 * 12 11 10 33 33 H 0.96998 * 119.99662 * 5.35296 * 14 13 12 34 34 H 1.08996 * 109.47067 * 300.00063 * 19 17 15 35 35 H 1.08999 * 109.47104 * 179.97438 * 19 17 15 36 36 H 1.09004 * 109.47230 * 299.99311 * 20 19 17 37 37 H 1.09002 * 109.46985 * 180.02562 * 20 19 17 38 38 H 1.09004 * 109.47647 * 180.02562 * 21 20 19 39 39 H 1.09004 * 109.47434 * 59.99358 * 21 20 19 40 40 H 0.96699 * 116.99561 * 180.02562 * 26 24 22 41 41 H 1.08995 * 109.47201 * 59.99974 * 27 22 21 42 42 H 1.09007 * 109.47244 * 180.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 1.4387 2.6527 0.6999 6 1 3.5389 1.4403 0.7000 7 6 2.0076 -1.2127 0.0005 8 1 3.0876 -1.2126 0.0010 9 6 1.3010 -2.4367 0.0005 10 6 2.0086 -3.6518 0.0016 11 6 1.3034 -4.8415 0.0011 12 6 -0.0828 -4.7935 -0.0011 13 6 -0.7277 -3.5550 -0.0021 14 7 -2.1195 -3.5048 -0.0037 15 6 -2.7509 -2.3191 -0.1134 16 8 -2.1107 -1.2892 -0.1170 17 6 -4.2525 -2.2733 -0.2317 18 1 -4.5638 -2.8208 -1.1214 19 6 -4.8815 -2.9138 1.0073 20 6 -4.4446 -2.1452 2.2560 21 6 -4.9033 -0.6898 2.1457 22 6 -4.2743 -0.0494 0.9066 23 1 -3.1882 -0.0825 0.9922 24 6 -4.7256 1.3844 0.7983 25 8 -5.3347 1.7539 -0.1776 26 8 -4.4510 2.2509 1.7860 27 6 -4.7113 -0.8179 -0.3421 28 7 -0.0356 -2.4318 -0.0065 29 1 -0.4850 0.8400 -0.0004 30 1 3.0886 -3.6559 0.0021 31 1 1.8216 -5.7891 0.0015 32 1 -0.6589 -5.7069 -0.0020 33 1 -2.6343 -4.3232 0.0742 34 1 -4.5548 -3.9506 1.0858 35 1 -5.9677 -2.8802 0.9219 36 1 -3.3585 -2.1784 2.3416 37 1 -4.8923 -2.6017 3.1387 38 1 -4.5916 -0.1422 3.0351 39 1 -5.9895 -0.6566 2.0601 40 1 -4.7613 3.1596 1.6716 41 1 -5.7974 -0.7847 -0.4276 42 1 -4.2628 -0.3619 -1.2248 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601078225.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:04 Heat of formation + Delta-G solvation = -86.382676 kcal Electronic energy + Delta-G solvation = -27837.657457 eV Core-core repulsion = 23975.732898 eV Total energy + Delta-G solvation = -3861.924560 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.67915 -39.56222 -38.08918 -36.44799 -35.90693 -34.16805 -33.07417 -31.45727 -30.72848 -30.28674 -28.88602 -25.60146 -24.41834 -23.71885 -21.90417 -21.35703 -21.04444 -20.12923 -18.78069 -17.88454 -17.53132 -16.75519 -16.11304 -15.76663 -15.67103 -14.84327 -14.71314 -14.52591 -14.43396 -13.74000 -13.56769 -13.43263 -13.37151 -12.86469 -12.61367 -12.37998 -12.27034 -12.02135 -11.77377 -11.63670 -11.36799 -11.18913 -11.01403 -10.95815 -10.85160 -10.66531 -10.53077 -10.47299 -10.13131 -10.02004 -9.93795 -9.62934 -9.02349 -8.79171 -7.96905 -7.20559 -6.96514 -6.15735 -4.40588 2.41124 2.76510 3.06142 3.17098 3.18898 3.22706 3.26237 3.71987 3.83024 4.05582 4.70329 4.76114 4.86327 4.92049 5.14849 5.20768 5.32620 5.43692 5.50579 5.57207 5.64913 5.84162 5.92568 6.00865 6.03513 6.07622 6.12401 6.24454 6.29874 6.40059 6.46147 6.50639 6.65523 6.71287 6.83377 6.84771 7.23365 7.54777 7.62258 7.80861 8.06250 8.06674 8.19668 8.46660 8.73602 9.04431 9.26505 10.23512 10.46094 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011156 B = 0.006010 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.184092 B = 4657.652156 C = 6671.157629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.655 5.655 2 C 0.060 3.940 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.424 4.424 8 H 0.081 0.919 9 C 0.271 3.729 10 C -0.305 4.305 11 C -0.037 4.037 12 C -0.358 4.358 13 C 0.371 3.629 14 N -0.665 5.665 15 C 0.477 3.523 16 O -0.407 6.407 17 C -0.110 4.110 18 H 0.095 0.905 19 C -0.110 4.110 20 C -0.122 4.122 21 C -0.105 4.105 22 C -0.095 4.095 23 H 0.149 0.851 24 C 0.489 3.511 25 O -0.526 6.526 26 O -0.516 6.516 27 C -0.076 4.076 28 N -0.472 5.472 29 H 0.270 0.730 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.398 0.602 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.403 0.597 41 H 0.070 0.930 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.949 -1.794 3.644 12.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.274 5.274 2 C -0.169 4.169 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.455 4.455 8 H 0.099 0.901 9 C 0.146 3.854 10 C -0.328 4.328 11 C -0.061 4.061 12 C -0.383 4.383 13 C 0.133 3.867 14 N -0.312 5.312 15 C 0.259 3.741 16 O -0.272 6.272 17 C -0.132 4.132 18 H 0.113 0.887 19 C -0.148 4.148 20 C -0.159 4.159 21 C -0.142 4.142 22 C -0.114 4.114 23 H 0.167 0.833 24 C 0.332 3.668 25 O -0.414 6.414 26 O -0.327 6.327 27 C -0.114 4.114 28 N -0.191 5.191 29 H 0.082 0.918 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.231 0.769 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.261 0.739 41 H 0.088 0.912 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.171 -0.297 3.400 12.640 hybrid contribution 0.359 -0.032 -0.143 0.388 sum -11.812 -0.328 3.257 12.257 Atomic orbital electron populations 1.70320 1.05714 1.27172 1.24152 1.26143 0.95137 1.00481 0.95183 0.86551 0.80613 0.81979 0.79034 1.19702 1.20310 1.18763 1.19564 0.94038 0.89367 1.42527 0.90053 1.18382 0.87245 0.91896 0.87864 1.21623 0.98533 0.93572 1.19096 1.20559 0.93232 0.96495 0.95815 1.20499 0.94782 0.95012 1.28041 1.18639 0.83421 0.90887 0.93790 1.43453 1.04987 1.09306 1.73425 1.20654 0.89000 0.84912 0.79551 1.91052 1.65283 1.30611 1.40224 1.21457 0.93910 0.97897 0.99926 0.88716 1.21541 1.00499 0.99051 0.93698 1.21560 1.02441 0.94408 0.97519 1.21471 0.99742 0.96362 0.96668 1.21468 1.06632 0.85810 0.97446 0.83345 1.23749 0.74789 0.89101 0.79140 1.90669 1.38993 1.79655 1.32120 1.84593 1.75404 1.24821 1.47837 1.21132 1.00513 0.92622 0.97168 1.68706 1.06921 1.23165 1.20287 0.91810 0.88660 0.88729 0.89196 0.76882 0.91416 0.91142 0.90796 0.91442 0.90839 0.92059 0.73933 0.91185 0.90315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -17.54 9.00 55.55 0.50 -17.04 16 2 C 0.06 1.54 5.50 -17.34 -0.10 1.45 16 3 Si 0.89 19.18 29.56 -169.99 -5.02 14.15 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 6 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.42 -11.51 9.14 -37.74 -0.34 -11.85 16 8 H 0.08 2.08 7.85 -52.49 -0.41 1.67 16 9 C 0.27 7.48 6.55 -85.00 -0.56 6.93 16 10 C -0.31 -7.60 9.83 -38.66 -0.38 -7.98 16 11 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 12 C -0.36 -7.84 9.95 -38.89 -0.39 -8.23 16 13 C 0.37 8.71 7.43 -154.97 -1.15 7.56 16 14 N -0.66 -12.26 5.31 -11.40 -0.06 -12.32 16 15 C 0.48 8.76 5.60 -10.98 -0.06 8.70 16 16 O -0.41 -9.29 9.43 5.56 0.05 -9.24 16 17 C -0.11 -1.46 3.02 -91.77 -0.28 -1.73 16 18 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 19 C -0.11 -1.16 5.35 -26.73 -0.14 -1.31 16 20 C -0.12 -1.45 5.70 -26.74 -0.15 -1.60 16 21 C -0.10 -1.28 5.14 -26.73 -0.14 -1.42 16 22 C -0.10 -1.43 2.33 -91.77 -0.21 -1.64 16 23 H 0.15 2.78 5.51 -51.93 -0.29 2.49 16 24 C 0.49 7.48 7.63 36.01 0.27 7.76 16 25 O -0.53 -9.17 16.74 -18.75 -0.31 -9.48 16 26 O -0.52 -6.64 13.33 -39.27 -0.52 -7.16 16 27 C -0.08 -1.10 3.66 -26.73 -0.10 -1.19 16 28 N -0.47 -12.78 5.74 -10.26 -0.06 -12.84 16 29 H 0.27 6.84 8.29 -40.82 -0.34 6.50 16 30 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 31 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 32 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 33 H 0.40 5.66 7.98 -40.82 -0.33 5.34 16 34 H 0.07 0.63 7.46 -51.93 -0.39 0.25 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 1.11 7.22 -51.93 -0.37 0.74 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.90 8.11 -51.93 -0.42 0.48 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.40 3.33 9.10 45.56 0.41 3.74 16 41 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 42 H 0.08 1.31 8.06 -51.93 -0.42 0.89 16 LS Contribution 341.81 15.07 5.15 5.15 Total: -1.00 -33.14 341.81 -9.13 -42.26 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -4.72 Total: 12.30 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -4.12 Total: -5.79 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: 0.38 Total: -42.20 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.78 Total: -25.88 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.02 Total: 14.15 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.14 -9.13 -42.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601078225.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.121 kcal (2) G-P(sol) polarization free energy of solvation -33.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds