Wall clock time and date at job start Tue Mar 31 2020 12:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86796 * 119.99729 * 2 1 4 4 H 1.48506 * 109.46913 * 269.99602 * 3 2 1 5 5 H 1.48502 * 109.47406 * 29.99412 * 3 2 1 6 6 H 1.48495 * 109.47321 * 149.99842 * 3 2 1 7 7 C 1.40028 * 119.99951 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99498 * 180.02562 * 7 2 1 9 9 C 1.41331 * 120.00439 * 0.02562 * 7 2 1 10 10 C 1.40614 * 119.79009 * 180.02562 * 9 7 2 11 11 C 1.38302 * 119.12755 * 180.02562 * 10 9 7 12 12 C 1.38701 * 118.67281 * 0.02562 * 11 10 9 13 13 C 1.39630 * 119.49192 * 359.97438 * 12 11 10 14 14 N 1.39271 * 119.57112 * 180.02562 * 13 12 11 15 15 C 1.34779 * 119.99864 * 185.34503 * 14 13 12 16 16 O 1.21273 * 120.00324 * 354.86827 * 15 14 13 17 17 C 1.50701 * 119.99821 * 174.86577 * 15 14 13 18 18 H 1.09001 * 109.47045 * 300.00002 * 17 15 14 19 19 C 1.53001 * 109.47221 * 60.00109 * 17 15 14 20 20 C 1.52998 * 109.46602 * 60.00235 * 19 17 15 21 21 C 1.52993 * 109.47641 * 60.00078 * 20 19 17 22 22 C 1.53005 * 109.46985 * 299.99988 * 21 20 19 23 23 H 1.09000 * 109.46777 * 299.99486 * 22 21 20 24 24 C 1.50701 * 109.47241 * 180.02562 * 22 21 20 25 25 O 1.20829 * 119.99880 * 240.00303 * 24 22 21 26 26 O 1.34234 * 120.00123 * 59.99532 * 24 22 21 27 27 C 1.52995 * 109.47097 * 59.99901 * 22 21 20 28 28 N 1.31933 * 120.85402 * 0.27583 * 13 12 11 29 29 H 0.96999 * 120.00132 * 0.02562 * 1 2 3 30 30 H 1.07996 * 120.43175 * 359.97438 * 10 9 7 31 31 H 1.08000 * 120.66515 * 179.97438 * 11 10 9 32 32 H 1.07997 * 120.25488 * 179.97438 * 12 11 10 33 33 H 0.96998 * 119.99662 * 5.35296 * 14 13 12 34 34 H 1.08996 * 109.47067 * 300.00063 * 19 17 15 35 35 H 1.08999 * 109.47104 * 179.97438 * 19 17 15 36 36 H 1.09004 * 109.47230 * 299.99311 * 20 19 17 37 37 H 1.09002 * 109.46985 * 180.02562 * 20 19 17 38 38 H 1.09004 * 109.47647 * 180.02562 * 21 20 19 39 39 H 1.09004 * 109.47434 * 59.99358 * 21 20 19 40 40 H 0.96699 * 116.99561 * 180.02562 * 26 24 22 41 41 H 1.08995 * 109.47201 * 59.99974 * 27 22 21 42 42 H 1.09007 * 109.47244 * 180.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 1.4387 2.6527 0.6999 6 1 3.5389 1.4403 0.7000 7 6 2.0076 -1.2127 0.0005 8 1 3.0876 -1.2126 0.0010 9 6 1.3010 -2.4367 0.0005 10 6 2.0086 -3.6518 0.0016 11 6 1.3034 -4.8415 0.0011 12 6 -0.0828 -4.7935 -0.0011 13 6 -0.7277 -3.5550 -0.0021 14 7 -2.1195 -3.5048 -0.0037 15 6 -2.7509 -2.3191 -0.1134 16 8 -2.1107 -1.2892 -0.1170 17 6 -4.2525 -2.2733 -0.2317 18 1 -4.5638 -2.8208 -1.1214 19 6 -4.8815 -2.9138 1.0073 20 6 -4.4446 -2.1452 2.2560 21 6 -4.9033 -0.6898 2.1457 22 6 -4.2743 -0.0494 0.9066 23 1 -3.1882 -0.0825 0.9922 24 6 -4.7256 1.3844 0.7983 25 8 -5.3347 1.7539 -0.1776 26 8 -4.4510 2.2509 1.7860 27 6 -4.7113 -0.8179 -0.3421 28 7 -0.0356 -2.4318 -0.0065 29 1 -0.4850 0.8400 -0.0004 30 1 3.0886 -3.6559 0.0021 31 1 1.8216 -5.7891 0.0015 32 1 -0.6589 -5.7069 -0.0020 33 1 -2.6343 -4.3232 0.0742 34 1 -4.5548 -3.9506 1.0858 35 1 -5.9677 -2.8802 0.9219 36 1 -3.3585 -2.1784 2.3416 37 1 -4.8923 -2.6017 3.1387 38 1 -4.5916 -0.1422 3.0351 39 1 -5.9895 -0.6566 2.0601 40 1 -4.7613 3.1596 1.6716 41 1 -5.7974 -0.7847 -0.4276 42 1 -4.2628 -0.3619 -1.2248 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601078225.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:03 Heat of formation + Delta-G solvation = -107.579911 kcal Electronic energy + Delta-G solvation = -27838.576639 eV Core-core repulsion = 23975.732898 eV Total energy + Delta-G solvation = -3862.843741 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.90430 -40.94478 -39.71660 -37.78601 -37.08579 -35.88095 -34.84585 -32.65222 -32.15997 -31.76529 -30.64073 -27.47424 -25.48662 -25.08848 -23.44777 -22.91876 -22.30405 -21.46404 -20.23971 -19.37615 -18.97959 -17.99504 -17.77529 -17.13194 -16.82893 -16.46687 -16.24124 -15.96564 -15.72032 -15.51468 -14.91649 -14.77979 -14.62411 -14.45460 -13.92674 -13.76016 -13.60277 -13.31085 -13.06338 -12.89737 -12.86398 -12.71443 -12.55184 -12.54229 -12.30538 -12.13724 -11.85172 -11.77409 -11.69909 -11.38807 -11.15857 -11.06971 -10.80427 -10.31626 -9.85514 -9.00634 -8.74948 -8.04179 -6.39410 0.95579 1.19755 1.28314 1.37929 1.48846 1.51803 2.16111 2.24467 2.25067 2.41838 3.01457 3.65900 3.73434 3.78205 4.06384 4.11614 4.17057 4.25132 4.38109 4.44838 4.50304 4.53014 4.69821 4.77785 4.81458 4.92827 4.98399 5.03039 5.04431 5.10961 5.13931 5.22154 5.29502 5.32732 5.32968 5.49174 5.60234 5.71819 5.91574 5.96262 6.18147 6.41888 6.79614 6.90268 6.99055 7.12300 7.81434 8.38473 8.56763 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011156 B = 0.006010 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.184092 B = 4657.652156 C = 6671.157629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.682 5.682 2 C 0.016 3.984 3 Si 0.966 3.034 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.256 1.256 7 C -0.466 4.466 8 H 0.082 0.918 9 C 0.239 3.761 10 C -0.332 4.332 11 C -0.036 4.036 12 C -0.347 4.347 13 C 0.351 3.649 14 N -0.654 5.654 15 C 0.467 3.533 16 O -0.454 6.454 17 C -0.096 4.096 18 H 0.122 0.878 19 C -0.104 4.104 20 C -0.120 4.120 21 C -0.098 4.098 22 C -0.096 4.096 23 H 0.108 0.892 24 C 0.491 3.509 25 O -0.551 6.551 26 O -0.514 6.514 27 C -0.072 4.072 28 N -0.503 5.503 29 H 0.267 0.733 30 H 0.100 0.900 31 H 0.134 0.866 32 H 0.131 0.869 33 H 0.419 0.581 34 H 0.086 0.914 35 H 0.105 0.895 36 H 0.032 0.968 37 H 0.094 0.906 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.423 0.577 41 H 0.095 0.905 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.147 -3.515 4.183 15.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.301 5.301 2 C -0.210 4.210 3 Si 0.788 3.212 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.180 1.180 7 C -0.497 4.497 8 H 0.100 0.900 9 C 0.113 3.887 10 C -0.355 4.355 11 C -0.060 4.060 12 C -0.372 4.372 13 C 0.112 3.888 14 N -0.303 5.303 15 C 0.251 3.749 16 O -0.321 6.321 17 C -0.117 4.117 18 H 0.140 0.860 19 C -0.141 4.141 20 C -0.157 4.157 21 C -0.136 4.136 22 C -0.115 4.115 23 H 0.126 0.874 24 C 0.335 3.665 25 O -0.442 6.442 26 O -0.327 6.327 27 C -0.110 4.110 28 N -0.223 5.223 29 H 0.077 0.923 30 H 0.118 0.882 31 H 0.151 0.849 32 H 0.149 0.851 33 H 0.256 0.744 34 H 0.105 0.895 35 H 0.124 0.876 36 H 0.051 0.949 37 H 0.112 0.888 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.284 0.716 41 H 0.113 0.887 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.400 -2.055 3.956 15.074 hybrid contribution 0.997 0.383 -0.284 1.105 sum -13.403 -1.672 3.672 13.997 Atomic orbital electron populations 1.70512 1.06926 1.27496 1.25200 1.26910 0.96020 1.03531 0.94566 0.85454 0.79354 0.77437 0.78989 1.19422 1.19898 1.17955 1.19833 0.94280 0.90507 1.45080 0.90029 1.18840 0.88180 0.93151 0.88530 1.21783 0.99047 0.94000 1.20717 1.21018 0.93752 0.97170 0.94061 1.20989 0.95065 0.95956 1.25180 1.19175 0.85526 0.90872 0.93194 1.43450 1.03224 1.10709 1.72875 1.21663 0.91199 0.84037 0.77973 1.91068 1.66934 1.32218 1.41878 1.21448 0.89629 0.97850 1.02809 0.85968 1.21602 1.02265 0.99290 0.90940 1.21551 0.99976 0.94570 0.99630 1.21470 1.00938 0.96368 0.94817 1.21398 1.04324 0.86368 0.99396 0.87426 1.23830 0.74186 0.89514 0.78931 1.90652 1.40409 1.80140 1.32988 1.84551 1.75075 1.26147 1.46934 1.21106 1.01541 0.93014 0.95366 1.68684 1.07026 1.25333 1.21256 0.92275 0.88182 0.84861 0.85116 0.74367 0.89499 0.87649 0.94906 0.88791 0.91367 0.89421 0.71610 0.88705 0.93699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -38.75 9.00 21.84 0.20 -38.55 16 2 C 0.02 0.84 5.50 85.29 0.47 1.31 16 3 Si 0.97 41.25 29.56 68.60 2.03 43.28 16 4 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 5 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 6 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 7 C -0.47 -26.63 9.14 23.47 0.21 -26.42 16 8 H 0.08 4.41 7.85 -2.91 -0.02 4.39 16 9 C 0.24 13.73 6.55 40.21 0.26 14.00 16 10 C -0.33 -16.86 9.83 22.87 0.22 -16.63 16 11 C -0.04 -1.55 10.15 22.40 0.23 -1.32 16 12 C -0.35 -14.48 9.95 22.72 0.23 -14.26 16 13 C 0.35 16.47 7.43 133.23 0.99 17.45 16 14 N -0.65 -23.45 5.31 -308.38 -1.64 -25.09 16 15 C 0.47 17.20 5.60 87.66 0.49 17.69 16 16 O -0.45 -21.76 9.43 -3.01 -0.03 -21.79 16 17 C -0.10 -2.34 3.02 -11.54 -0.03 -2.38 16 18 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 19 C -0.10 -1.78 5.35 30.59 0.16 -1.61 16 20 C -0.12 -2.58 5.70 30.59 0.17 -2.41 16 21 C -0.10 -2.25 5.14 30.59 0.16 -2.09 16 22 C -0.10 -2.91 2.33 -11.54 -0.03 -2.94 16 23 H 0.11 4.31 5.51 -2.39 -0.01 4.30 16 24 C 0.49 15.11 7.63 71.24 0.54 15.66 16 25 O -0.55 -19.25 16.74 21.96 0.37 -18.89 16 26 O -0.51 -13.16 13.33 -51.45 -0.69 -13.84 16 27 C -0.07 -2.02 3.66 30.59 0.11 -1.91 16 28 N -0.50 -28.28 5.74 -186.36 -1.07 -29.35 16 29 H 0.27 14.44 8.29 -92.71 -0.77 13.67 16 30 H 0.10 4.78 8.06 -2.91 -0.02 4.76 16 31 H 0.13 4.65 8.06 -2.91 -0.02 4.63 16 32 H 0.13 4.33 8.06 -2.91 -0.02 4.31 16 33 H 0.42 10.76 7.98 -92.71 -0.74 10.02 16 34 H 0.09 1.21 7.46 -2.39 -0.02 1.19 16 35 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.03 0.98 7.22 -2.39 -0.02 0.96 16 37 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.07 1.61 8.11 -2.38 -0.02 1.59 16 39 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.42 6.71 9.10 -74.06 -0.67 6.04 16 41 H 0.09 2.17 8.10 -2.39 -0.02 2.15 16 42 H 0.04 1.54 8.06 -2.38 -0.02 1.52 16 Total: -1.00 -77.93 341.81 3.03 -74.90 By element: Atomic # 1 Polarization: 35.52 SS G_CDS: -0.34 Total: 35.18 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: 4.19 Total: -5.86 kcal Atomic # 7 Polarization: -90.48 SS G_CDS: -2.51 Total: -92.99 kcal Atomic # 8 Polarization: -54.17 SS G_CDS: -0.35 Total: -54.52 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Total: -77.93 3.03 -74.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601078225.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.679 kcal (2) G-P(sol) polarization free energy of solvation -77.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds