Wall clock time and date at job start Tue Mar 31 2020 12:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86811 * 119.99869 * 2 1 4 4 H 1.48501 * 109.46916 * 270.00271 * 3 2 1 5 5 H 1.48493 * 109.46883 * 30.00114 * 3 2 1 6 6 H 1.48498 * 109.46703 * 150.00526 * 3 2 1 7 7 C 1.40022 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00105 * 179.97438 * 7 2 1 9 9 C 1.41338 * 120.00303 * 359.97438 * 7 2 1 10 10 C 1.40608 * 119.79403 * 180.02562 * 9 7 2 11 11 C 1.38302 * 119.13179 * 179.97438 * 10 9 7 12 12 C 1.38696 * 118.66931 * 0.02562 * 11 10 9 13 13 C 1.39633 * 119.49536 * 359.97438 * 12 11 10 14 14 N 1.39274 * 119.57568 * 179.97438 * 13 12 11 15 15 C 1.34773 * 120.00118 * 174.68769 * 14 13 12 16 16 O 1.21270 * 120.00016 * 5.15942 * 15 14 13 17 17 C 1.50699 * 119.99791 * 185.15398 * 15 14 13 18 18 H 1.08998 * 109.47775 * 300.00218 * 17 15 14 19 19 C 1.53000 * 109.47224 * 60.00225 * 17 15 14 20 20 C 1.52995 * 109.47413 * 179.97438 * 19 17 15 21 21 C 1.52998 * 109.47115 * 299.99970 * 20 19 17 22 22 C 1.52998 * 109.47296 * 60.00173 * 21 20 19 23 23 H 1.09002 * 109.47404 * 59.99245 * 22 21 20 24 24 C 1.50701 * 109.47655 * 179.97438 * 22 21 20 25 25 O 1.20822 * 119.99645 * 119.99261 * 24 22 21 26 26 O 1.34224 * 120.00108 * 300.00527 * 24 22 21 27 27 C 1.53003 * 109.46980 * 299.99781 * 22 21 20 28 28 N 1.31927 * 120.85079 * 0.02562 * 13 12 11 29 29 H 0.97003 * 120.00010 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.43327 * 359.97438 * 10 9 7 31 31 H 1.08002 * 120.66649 * 180.02562 * 11 10 9 32 32 H 1.07995 * 120.25463 * 180.02562 * 12 11 10 33 33 H 0.97006 * 119.99716 * 354.68580 * 14 13 12 34 34 H 1.08997 * 109.47221 * 299.99903 * 19 17 15 35 35 H 1.09006 * 109.47052 * 59.99414 * 19 17 15 36 36 H 1.09006 * 109.47198 * 59.99861 * 20 19 17 37 37 H 1.08996 * 109.47332 * 180.02562 * 20 19 17 38 38 H 1.09006 * 109.47136 * 179.97438 * 21 20 19 39 39 H 1.08994 * 109.47622 * 299.99784 * 21 20 19 40 40 H 0.96693 * 117.00170 * 180.02562 * 26 24 22 41 41 H 1.08992 * 109.47115 * 300.00135 * 27 22 21 42 42 H 1.08996 * 109.47415 * 179.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4888 2.0465 -1.4001 5 1 1.4388 2.6527 0.7000 6 1 3.5390 1.4402 0.6999 7 6 2.0075 -1.2126 -0.0005 8 1 3.0875 -1.2126 -0.0010 9 6 1.3009 -2.4367 -0.0005 10 6 2.0084 -3.6518 -0.0005 11 6 1.3032 -4.8415 0.0000 12 6 -0.0829 -4.7934 0.0000 13 6 -0.7278 -3.5549 0.0000 14 7 -2.1196 -3.5046 -0.0006 15 6 -2.7512 -2.3189 0.1074 16 8 -2.1109 -1.2890 0.1109 17 6 -4.2530 -2.2730 0.2238 18 1 -4.7000 -2.7300 -0.6590 19 6 -4.6914 -3.0405 1.4727 20 6 -6.2161 -2.9933 1.5912 21 6 -6.6744 -1.5377 1.7001 22 6 -6.2360 -0.7702 0.4512 23 1 -6.6833 -1.2270 -0.4317 24 6 -6.6880 0.6635 0.5580 25 8 -5.8740 1.5562 0.5415 26 8 -7.9946 0.9486 0.6718 27 6 -4.7113 -0.8173 0.3327 28 7 -0.0357 -2.4318 -0.0005 29 1 -0.4850 0.8401 0.0004 30 1 3.0884 -3.6560 -0.0010 31 1 1.8215 -5.7891 0.0004 32 1 -0.6591 -5.7068 0.0008 33 1 -2.6345 -4.3231 -0.0788 34 1 -4.3646 -4.0774 1.3954 35 1 -4.2444 -2.5835 2.3556 36 1 -6.6635 -3.4501 0.7083 37 1 -6.5284 -3.5397 2.4811 38 1 -7.7607 -1.5041 1.7841 39 1 -6.2271 -1.0809 2.5828 40 1 -8.2361 1.8826 0.7370 41 1 -4.2640 -0.3606 1.2154 42 1 -4.3990 -0.2709 -0.5573 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601078227.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:10 Heat of formation + Delta-G solvation = -90.231099 kcal Electronic energy + Delta-G solvation = -26923.448515 eV Core-core repulsion = 23061.357075 eV Total energy + Delta-G solvation = -3862.091440 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.71585 -39.52670 -38.09830 -36.84516 -36.18513 -34.09161 -32.99395 -31.59970 -30.90725 -30.24578 -28.85702 -25.56890 -24.59728 -23.85456 -21.77664 -21.39804 -21.05685 -19.90805 -19.15281 -18.10309 -17.71687 -16.87157 -16.08619 -16.02009 -15.60098 -15.00009 -14.64864 -14.60348 -14.41859 -13.91502 -13.68091 -13.62774 -13.25031 -13.03084 -12.67442 -12.54425 -12.43752 -11.90954 -11.86747 -11.66406 -11.41684 -11.22440 -11.10440 -10.91966 -10.82175 -10.73800 -10.61902 -10.46411 -10.43573 -10.21048 -9.89917 -9.62179 -8.97989 -8.83741 -7.93345 -7.16479 -6.92740 -6.09848 -4.36651 2.12665 2.81400 2.88376 3.10630 3.21241 3.23392 3.29887 3.74991 3.88516 4.10187 4.52210 4.58363 4.64028 4.94517 4.97498 5.11028 5.18942 5.22414 5.32176 5.37728 5.49354 5.61278 5.82318 5.88732 5.90142 6.05133 6.08076 6.11565 6.15651 6.31589 6.35725 6.51743 6.53273 6.72817 6.86990 6.88230 7.27940 7.58554 7.66361 7.79694 7.84150 8.10636 8.23821 8.50969 8.78209 9.08594 9.32597 10.28516 10.52156 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012960 B = 0.004298 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.054838 B = 6513.379949 C = 8491.026539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.653 5.653 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.425 4.425 8 H 0.082 0.918 9 C 0.271 3.729 10 C -0.306 4.306 11 C -0.037 4.037 12 C -0.359 4.359 13 C 0.372 3.628 14 N -0.666 5.666 15 C 0.472 3.528 16 O -0.404 6.404 17 C -0.103 4.103 18 H 0.089 0.911 19 C -0.114 4.114 20 C -0.114 4.114 21 C -0.111 4.111 22 C -0.077 4.077 23 H 0.108 0.892 24 C 0.478 3.522 25 O -0.504 6.504 26 O -0.520 6.520 27 C -0.083 4.083 28 N -0.474 5.474 29 H 0.273 0.727 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.397 0.603 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.407 0.593 41 H 0.082 0.918 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.051 -3.455 1.856 17.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.272 5.272 2 C -0.172 4.172 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.455 4.455 8 H 0.100 0.900 9 C 0.146 3.854 10 C -0.329 4.329 11 C -0.061 4.061 12 C -0.385 4.385 13 C 0.133 3.867 14 N -0.314 5.314 15 C 0.254 3.746 16 O -0.267 6.267 17 C -0.125 4.125 18 H 0.108 0.892 19 C -0.152 4.152 20 C -0.152 4.152 21 C -0.149 4.149 22 C -0.096 4.096 23 H 0.126 0.874 24 C 0.320 3.680 25 O -0.391 6.391 26 O -0.333 6.333 27 C -0.121 4.121 28 N -0.193 5.193 29 H 0.085 0.915 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.231 0.769 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.265 0.735 41 H 0.100 0.900 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.893 -1.798 1.852 17.090 hybrid contribution 0.370 -0.009 -0.069 0.376 sum -16.523 -1.807 1.783 16.717 Atomic orbital electron populations 1.70296 1.05709 1.27538 1.23656 1.26167 0.95136 1.00528 0.95337 0.86540 0.80533 0.82016 0.79019 1.19674 1.20281 1.18791 1.19581 0.94040 0.89397 1.42532 0.90015 1.18390 0.87225 0.91929 0.87905 1.21617 0.98518 0.93565 1.19246 1.20555 0.93233 0.96476 0.95843 1.20485 0.94775 0.94958 1.28254 1.18636 0.83432 0.90867 0.93718 1.43437 1.04983 1.09239 1.73692 1.20604 0.88925 0.84956 0.80144 1.91164 1.65235 1.30799 1.39463 1.21333 0.94323 0.97183 0.99689 0.89249 1.21568 0.95523 1.00348 0.97717 1.21525 0.95723 0.95496 1.02420 1.21553 1.01383 0.95770 0.96177 1.21111 0.98459 0.88240 1.01788 0.87419 1.23606 0.79619 0.92928 0.71848 1.90780 1.54205 1.49121 1.44968 1.84530 1.27995 1.35405 1.85327 1.21217 0.90203 0.95306 1.05383 1.68713 1.06973 1.23259 1.20325 0.91481 0.88646 0.88717 0.89193 0.76944 0.91174 0.91108 0.91419 0.91141 0.90673 0.91215 0.73476 0.89976 0.90079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -18.45 8.99 55.55 0.50 -17.95 16 2 C 0.06 1.55 5.50 -17.35 -0.10 1.45 16 3 Si 0.89 19.77 29.56 -169.99 -5.02 14.75 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.42 -11.88 9.14 -37.74 -0.34 -12.22 16 8 H 0.08 2.14 7.85 -52.49 -0.41 1.73 16 9 C 0.27 7.70 6.55 -85.00 -0.56 7.14 16 10 C -0.31 -7.82 9.83 -38.66 -0.38 -8.20 16 11 C -0.04 -0.85 10.15 -39.39 -0.40 -1.25 16 12 C -0.36 -8.08 9.95 -38.89 -0.39 -8.47 16 13 C 0.37 9.07 7.43 -154.97 -1.15 7.92 16 14 N -0.67 -12.82 5.24 -11.40 -0.06 -12.88 16 15 C 0.47 9.22 7.11 -10.99 -0.08 9.14 16 16 O -0.40 -10.07 11.75 5.57 0.07 -10.00 16 17 C -0.10 -1.38 2.52 -91.77 -0.23 -1.61 16 18 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 19 C -0.11 -1.23 5.11 -26.73 -0.14 -1.36 16 20 C -0.11 -0.91 5.92 -26.73 -0.16 -1.07 16 21 C -0.11 -0.97 5.14 -26.73 -0.14 -1.11 16 22 C -0.08 -0.81 2.63 -91.77 -0.24 -1.05 16 23 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 24 C 0.48 5.70 7.63 36.01 0.27 5.97 16 25 O -0.50 -8.15 16.74 -18.75 -0.31 -8.47 16 26 O -0.52 -4.50 13.33 -39.24 -0.52 -5.02 16 27 C -0.08 -1.18 3.06 -26.73 -0.08 -1.27 16 28 N -0.47 -13.39 5.74 -10.26 -0.06 -13.45 16 29 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 30 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 31 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 32 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 33 H 0.40 5.82 8.28 -40.82 -0.34 5.49 16 34 H 0.07 0.68 7.69 -51.93 -0.40 0.29 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.56 8.11 -51.93 -0.42 0.13 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.41 1.95 9.10 45.56 0.41 2.36 16 41 H 0.08 1.38 8.06 -51.93 -0.42 0.96 16 42 H 0.08 1.33 8.06 -51.93 -0.42 0.92 16 LS Contribution 348.80 15.07 5.26 5.26 Total: -1.00 -35.76 348.80 -9.20 -44.95 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -4.93 Total: 8.79 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -4.11 Total: -5.97 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: 0.38 Total: -44.29 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -0.77 Total: -23.49 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.76 -9.20 -44.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601078227.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.280 kcal (2) G-P(sol) polarization free energy of solvation -35.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds