Wall clock time and date at job start Tue Mar 31 2020 12:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86811 * 119.99869 * 2 1 4 4 H 1.48501 * 109.46916 * 270.00271 * 3 2 1 5 5 H 1.48493 * 109.46883 * 30.00114 * 3 2 1 6 6 H 1.48498 * 109.46703 * 150.00526 * 3 2 1 7 7 C 1.40022 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00105 * 179.97438 * 7 2 1 9 9 C 1.41338 * 120.00303 * 359.97438 * 7 2 1 10 10 C 1.40608 * 119.79403 * 180.02562 * 9 7 2 11 11 C 1.38302 * 119.13179 * 179.97438 * 10 9 7 12 12 C 1.38696 * 118.66931 * 0.02562 * 11 10 9 13 13 C 1.39633 * 119.49536 * 359.97438 * 12 11 10 14 14 N 1.39274 * 119.57568 * 179.97438 * 13 12 11 15 15 C 1.34773 * 120.00118 * 174.68769 * 14 13 12 16 16 O 1.21270 * 120.00016 * 5.15942 * 15 14 13 17 17 C 1.50699 * 119.99791 * 185.15398 * 15 14 13 18 18 H 1.08998 * 109.47775 * 300.00218 * 17 15 14 19 19 C 1.53000 * 109.47224 * 60.00225 * 17 15 14 20 20 C 1.52995 * 109.47413 * 179.97438 * 19 17 15 21 21 C 1.52998 * 109.47115 * 299.99970 * 20 19 17 22 22 C 1.52998 * 109.47296 * 60.00173 * 21 20 19 23 23 H 1.09002 * 109.47404 * 59.99245 * 22 21 20 24 24 C 1.50701 * 109.47655 * 179.97438 * 22 21 20 25 25 O 1.20822 * 119.99645 * 119.99261 * 24 22 21 26 26 O 1.34224 * 120.00108 * 300.00527 * 24 22 21 27 27 C 1.53003 * 109.46980 * 299.99781 * 22 21 20 28 28 N 1.31927 * 120.85079 * 0.02562 * 13 12 11 29 29 H 0.97003 * 120.00010 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.43327 * 359.97438 * 10 9 7 31 31 H 1.08002 * 120.66649 * 180.02562 * 11 10 9 32 32 H 1.07995 * 120.25463 * 180.02562 * 12 11 10 33 33 H 0.97006 * 119.99716 * 354.68580 * 14 13 12 34 34 H 1.08997 * 109.47221 * 299.99903 * 19 17 15 35 35 H 1.09006 * 109.47052 * 59.99414 * 19 17 15 36 36 H 1.09006 * 109.47198 * 59.99861 * 20 19 17 37 37 H 1.08996 * 109.47332 * 180.02562 * 20 19 17 38 38 H 1.09006 * 109.47136 * 179.97438 * 21 20 19 39 39 H 1.08994 * 109.47622 * 299.99784 * 21 20 19 40 40 H 0.96693 * 117.00170 * 180.02562 * 26 24 22 41 41 H 1.08992 * 109.47115 * 300.00135 * 27 22 21 42 42 H 1.08996 * 109.47415 * 179.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4888 2.0465 -1.4001 5 1 1.4388 2.6527 0.7000 6 1 3.5390 1.4402 0.6999 7 6 2.0075 -1.2126 -0.0005 8 1 3.0875 -1.2126 -0.0010 9 6 1.3009 -2.4367 -0.0005 10 6 2.0084 -3.6518 -0.0005 11 6 1.3032 -4.8415 0.0000 12 6 -0.0829 -4.7934 0.0000 13 6 -0.7278 -3.5549 0.0000 14 7 -2.1196 -3.5046 -0.0006 15 6 -2.7512 -2.3189 0.1074 16 8 -2.1109 -1.2890 0.1109 17 6 -4.2530 -2.2730 0.2238 18 1 -4.7000 -2.7300 -0.6590 19 6 -4.6914 -3.0405 1.4727 20 6 -6.2161 -2.9933 1.5912 21 6 -6.6744 -1.5377 1.7001 22 6 -6.2360 -0.7702 0.4512 23 1 -6.6833 -1.2270 -0.4317 24 6 -6.6880 0.6635 0.5580 25 8 -5.8740 1.5562 0.5415 26 8 -7.9946 0.9486 0.6718 27 6 -4.7113 -0.8173 0.3327 28 7 -0.0357 -2.4318 -0.0005 29 1 -0.4850 0.8401 0.0004 30 1 3.0884 -3.6560 -0.0010 31 1 1.8215 -5.7891 0.0004 32 1 -0.6591 -5.7068 0.0008 33 1 -2.6345 -4.3231 -0.0788 34 1 -4.3646 -4.0774 1.3954 35 1 -4.2444 -2.5835 2.3556 36 1 -6.6635 -3.4501 0.7083 37 1 -6.5284 -3.5397 2.4811 38 1 -7.7607 -1.5041 1.7841 39 1 -6.2271 -1.0809 2.5828 40 1 -8.2361 1.8826 0.7370 41 1 -4.2640 -0.3606 1.2154 42 1 -4.3990 -0.2709 -0.5573 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601078227.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:08 Heat of formation + Delta-G solvation = -114.460773 kcal Electronic energy + Delta-G solvation = -26924.499192 eV Core-core repulsion = 23061.357075 eV Total energy + Delta-G solvation = -3863.142117 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.73412 -40.98336 -39.65093 -38.16504 -37.10224 -35.91758 -34.84897 -32.69193 -32.18480 -31.82224 -30.66477 -27.50426 -25.51930 -25.18246 -23.46170 -22.81466 -22.23549 -21.00726 -20.53240 -19.59958 -18.95088 -18.16119 -17.85933 -17.08935 -16.71204 -16.49536 -16.25875 -16.09655 -15.68598 -15.52207 -14.87365 -14.83672 -14.66774 -14.54959 -14.03189 -13.86729 -13.63992 -13.39303 -13.22413 -12.90654 -12.73326 -12.60793 -12.57040 -12.37218 -12.31627 -12.17124 -11.82555 -11.78591 -11.56804 -11.48544 -11.39216 -11.12770 -10.85188 -10.45852 -9.89098 -9.05014 -8.79209 -8.05459 -6.42600 0.93261 1.19672 1.26218 1.36180 1.48750 1.50933 2.03479 2.19192 2.23771 2.45020 2.99342 3.54015 3.70877 3.79530 3.97563 4.06163 4.16689 4.23570 4.37391 4.41609 4.44372 4.44628 4.64479 4.69558 4.78131 4.91352 4.96603 5.05967 5.08321 5.10575 5.16595 5.22831 5.26076 5.31445 5.33903 5.50974 5.62336 5.69435 5.88925 5.93655 6.15176 6.39490 6.76923 6.87930 6.99125 7.09028 7.77553 8.36860 8.55526 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012960 B = 0.004298 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.054838 B = 6513.379949 C = 8491.026539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.689 5.689 2 C 0.012 3.988 3 Si 0.971 3.029 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.253 1.253 7 C -0.468 4.468 8 H 0.085 0.915 9 C 0.237 3.763 10 C -0.332 4.332 11 C -0.035 4.035 12 C -0.344 4.344 13 C 0.348 3.652 14 N -0.653 5.653 15 C 0.461 3.539 16 O -0.465 6.465 17 C -0.086 4.086 18 H 0.128 0.872 19 C -0.110 4.110 20 C -0.104 4.104 21 C -0.107 4.107 22 C -0.070 4.070 23 H 0.142 0.858 24 C 0.483 3.517 25 O -0.560 6.560 26 O -0.505 6.505 27 C -0.077 4.077 28 N -0.510 5.510 29 H 0.267 0.733 30 H 0.103 0.897 31 H 0.137 0.863 32 H 0.134 0.866 33 H 0.421 0.579 34 H 0.088 0.912 35 H 0.043 0.957 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.051 0.949 40 H 0.425 0.575 41 H 0.040 0.960 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.674 -6.134 1.772 20.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.309 5.309 2 C -0.214 4.214 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.176 1.176 7 C -0.499 4.499 8 H 0.103 0.897 9 C 0.111 3.889 10 C -0.355 4.355 11 C -0.060 4.060 12 C -0.369 4.369 13 C 0.110 3.890 14 N -0.302 5.302 15 C 0.245 3.755 16 O -0.331 6.331 17 C -0.107 4.107 18 H 0.146 0.854 19 C -0.148 4.148 20 C -0.141 4.141 21 C -0.145 4.145 22 C -0.089 4.089 23 H 0.160 0.840 24 C 0.327 3.673 25 O -0.451 6.451 26 O -0.318 6.318 27 C -0.115 4.115 28 N -0.230 5.230 29 H 0.078 0.922 30 H 0.121 0.879 31 H 0.155 0.845 32 H 0.152 0.848 33 H 0.259 0.741 34 H 0.107 0.893 35 H 0.061 0.939 36 H 0.115 0.885 37 H 0.109 0.891 38 H 0.120 0.880 39 H 0.070 0.930 40 H 0.286 0.714 41 H 0.059 0.941 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -19.585 -4.545 1.773 20.183 hybrid contribution 1.090 0.648 -0.038 1.269 sum -18.494 -3.897 1.735 18.980 Atomic orbital electron populations 1.70524 1.07211 1.27735 1.25388 1.27016 0.95972 1.03931 0.94461 0.85385 0.79203 0.77010 0.79208 1.18951 1.20282 1.17650 1.19886 0.94400 0.90490 1.45088 0.89693 1.18875 0.88075 0.93340 0.88585 1.21799 0.99158 0.93911 1.20587 1.21049 0.93715 0.97238 0.93959 1.21001 0.95116 0.95834 1.24980 1.19208 0.85535 0.90947 0.93348 1.43423 1.03298 1.10605 1.72884 1.21800 0.91497 0.84038 0.78182 1.91165 1.67226 1.32854 1.41892 1.21287 0.89382 0.97189 1.02847 0.85404 1.21594 0.98053 1.00361 0.94805 1.21521 0.92833 0.95001 1.04780 1.21587 1.02785 0.95967 0.94155 1.21114 0.95316 0.88046 1.04422 0.84005 1.23892 0.80005 0.93030 0.70335 1.90777 1.55800 1.50759 1.47714 1.84474 1.25789 1.37175 1.84350 1.21040 0.93292 0.95362 1.01847 1.68680 1.07290 1.25673 1.21336 0.92232 0.87920 0.84510 0.84773 0.74120 0.89308 0.93854 0.88526 0.89147 0.88031 0.92989 0.71362 0.94090 0.93459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -41.71 8.99 21.84 0.20 -41.52 16 2 C 0.01 0.66 5.50 85.29 0.47 1.13 16 3 Si 0.97 42.91 29.56 68.60 2.03 44.93 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.25 -10.58 7.11 99.48 0.71 -9.88 16 7 C -0.47 -27.58 9.14 23.47 0.21 -27.37 16 8 H 0.08 4.69 7.85 -2.91 -0.02 4.67 16 9 C 0.24 14.08 6.55 40.21 0.26 14.34 16 10 C -0.33 -17.15 9.83 22.86 0.22 -16.92 16 11 C -0.04 -1.56 10.15 22.39 0.23 -1.33 16 12 C -0.34 -14.67 9.95 22.72 0.23 -14.44 16 13 C 0.35 16.98 7.43 133.23 0.99 17.97 16 14 N -0.65 -24.61 5.24 -308.39 -1.62 -26.22 16 15 C 0.46 18.39 7.11 87.66 0.62 19.01 16 16 O -0.46 -24.80 11.75 -3.00 -0.04 -24.84 16 17 C -0.09 -2.19 2.52 -11.54 -0.03 -2.22 16 18 H 0.13 2.34 8.14 -2.39 -0.02 2.32 16 19 C -0.11 -2.11 5.11 30.59 0.16 -1.96 16 20 C -0.10 -1.19 5.92 30.59 0.18 -1.01 16 21 C -0.11 -1.55 5.14 30.59 0.16 -1.39 16 22 C -0.07 -1.36 2.63 -11.54 -0.03 -1.39 16 23 H 0.14 1.84 8.14 -2.39 -0.02 1.82 16 24 C 0.48 11.27 7.63 71.24 0.54 11.81 16 25 O -0.56 -19.07 16.74 21.98 0.37 -18.71 16 26 O -0.50 -7.59 13.33 -51.36 -0.68 -8.28 16 27 C -0.08 -2.28 3.06 30.60 0.09 -2.19 16 28 N -0.51 -30.03 5.74 -186.36 -1.07 -31.10 16 29 H 0.27 15.54 8.29 -92.71 -0.77 14.77 16 30 H 0.10 4.97 8.06 -2.91 -0.02 4.94 16 31 H 0.14 4.79 8.06 -2.91 -0.02 4.77 16 32 H 0.13 4.48 8.06 -2.91 -0.02 4.45 16 33 H 0.42 11.12 8.28 -92.70 -0.77 10.36 16 34 H 0.09 1.39 7.69 -2.39 -0.02 1.37 16 35 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 37 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.10 1.02 8.11 -2.38 -0.02 1.00 16 39 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.43 3.27 9.10 -74.06 -0.67 2.60 16 41 H 0.04 1.52 8.06 -2.39 -0.02 1.50 16 42 H 0.05 1.68 8.06 -2.39 -0.02 1.66 16 Total: -1.00 -87.01 348.80 3.12 -83.89 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: -0.38 Total: 27.79 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: 4.31 Total: -5.96 kcal Atomic # 7 Polarization: -96.35 SS G_CDS: -2.49 Total: -98.84 kcal Atomic # 8 Polarization: -51.47 SS G_CDS: -0.35 Total: -51.82 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Total: -87.01 3.12 -83.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601078227.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.573 kcal (2) G-P(sol) polarization free energy of solvation -87.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds