Wall clock time and date at job start Tue Mar 31 2020 12:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86791 * 119.99874 * 2 1 4 4 H 1.48504 * 109.47219 * 275.31151 * 3 2 1 5 5 H 1.48498 * 109.47211 * 35.31078 * 3 2 1 6 6 H 1.48504 * 109.47342 * 155.31130 * 3 2 1 7 7 C 1.39932 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00117 * 346.28503 * 7 2 1 9 9 C 1.41401 * 119.99845 * 166.28619 * 7 2 1 10 10 C 1.40780 * 120.21228 * 331.39873 * 9 7 2 11 11 C 1.37642 * 119.88536 * 180.02562 * 10 9 7 12 12 C 1.38532 * 120.32148 * 359.75271 * 11 10 9 13 13 C 1.39247 * 120.43016 * 0.50985 * 12 11 10 14 14 N 1.39953 * 119.94884 * 179.76512 * 13 12 11 15 15 C 1.34774 * 120.00041 * 326.48147 * 14 13 12 16 16 O 1.21591 * 120.00044 * 354.96601 * 15 14 13 17 17 N 1.34776 * 120.00324 * 174.96999 * 15 14 13 18 18 C 1.46500 * 120.00251 * 180.02562 * 17 15 14 19 19 C 1.53773 * 113.61402 * 204.99674 * 18 17 15 20 20 C 1.53785 * 87.08276 * 219.93612 * 19 18 17 21 21 C 1.52997 * 113.61417 * 139.98225 * 20 19 18 22 22 C 1.50700 * 109.47060 * 176.52912 * 21 20 19 23 23 O 1.20832 * 119.99862 * 0.02562 * 22 21 20 24 24 O 1.34224 * 120.00140 * 180.02562 * 22 21 20 25 25 C 1.53775 * 87.17074 * 25.39163 * 20 19 18 26 26 C 1.38279 * 120.10099 * 359.48730 * 13 12 11 27 27 H 0.97001 * 120.00258 * 0.02562 * 1 2 3 28 28 H 1.07993 * 120.05670 * 0.05205 * 10 9 7 29 29 H 1.07998 * 119.83664 * 179.97438 * 11 10 9 30 30 H 1.07999 * 119.78826 * 180.26711 * 12 11 10 31 31 H 0.97002 * 119.99742 * 146.48897 * 14 13 12 32 32 H 0.97000 * 119.99430 * 359.97438 * 17 15 14 33 33 H 1.08993 * 112.84878 * 336.19950 * 18 17 15 34 34 H 1.09001 * 113.61283 * 105.38583 * 19 18 17 35 35 H 1.08999 * 113.61965 * 334.48489 * 19 18 17 36 36 H 1.09001 * 113.61393 * 270.80066 * 20 19 18 37 37 H 1.09004 * 109.46922 * 56.53227 * 21 20 19 38 38 H 1.08997 * 109.47229 * 296.52786 * 21 20 19 39 39 H 0.96705 * 117.00236 * 180.02562 * 24 22 21 40 40 H 1.09000 * 113.61637 * 89.15563 * 25 20 19 41 41 H 1.09005 * 113.61687 * 220.06218 * 25 20 19 42 42 H 1.08005 * 120.15736 * 180.23530 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3775 2.1112 -1.3941 5 1 1.5003 2.6176 0.8092 6 1 3.5915 1.4104 0.5848 7 6 2.0080 -1.2118 -0.0005 8 1 1.4911 -2.1340 0.2208 9 6 3.3918 -1.2291 -0.2909 10 6 3.9523 -0.2460 -1.1283 11 6 5.3000 -0.2695 -1.4068 12 6 6.1095 -1.2534 -0.8629 13 6 5.5682 -2.2354 -0.0374 14 7 6.3945 -3.2275 0.5027 15 6 7.4497 -3.6826 -0.2014 16 8 7.6314 -3.2989 -1.3408 17 7 8.3036 -4.5631 0.3574 18 6 9.4510 -5.0573 -0.4078 19 6 9.9594 -6.4304 0.0621 20 6 11.3826 -5.8910 -0.1580 21 6 12.3745 -6.3188 0.9255 22 6 13.7502 -5.8133 0.5750 23 8 13.9199 -5.1758 -0.4373 24 8 14.7872 -6.0712 1.3874 25 6 10.8012 -4.4842 0.0599 26 6 4.2165 -2.2286 0.2543 27 1 -0.4850 0.8400 -0.0004 28 1 3.3260 0.5255 -1.5510 29 1 5.7291 0.4848 -2.0497 30 1 7.1666 -1.2612 -1.0838 31 1 6.2076 -3.5877 1.3838 32 1 8.1588 -4.8689 1.2664 33 1 9.3005 -4.9927 -1.4854 34 1 9.6935 -7.2473 -0.6087 35 1 9.7310 -6.6469 1.1057 36 1 11.7608 -6.0558 -1.1669 37 1 12.3932 -7.4066 0.9919 38 1 12.0675 -5.9014 1.8844 39 1 15.6502 -5.7259 1.1208 40 1 10.8033 -4.1675 1.1028 41 1 11.2138 -3.7321 -0.6127 42 1 3.7964 -2.9876 0.8976 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601078311.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:00 Heat of formation + Delta-G solvation = -82.489202 kcal Electronic energy + Delta-G solvation = -25175.786910 eV Core-core repulsion = 21314.031185 eV Total energy + Delta-G solvation = -3861.755726 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.91019 -40.20351 -38.96136 -37.42932 -36.48397 -34.42198 -33.78974 -33.07805 -30.69750 -30.21690 -28.48911 -26.02451 -25.08444 -24.40673 -22.30045 -21.10037 -21.04777 -20.40805 -19.76409 -18.44995 -18.00787 -17.75421 -17.06842 -16.43097 -16.17649 -15.88430 -15.44638 -15.11999 -14.86156 -14.34852 -14.23954 -13.75324 -13.52510 -13.46133 -12.84852 -12.71109 -12.65469 -12.58515 -12.22363 -11.98146 -11.90447 -11.65863 -11.37855 -11.20786 -11.01068 -10.83768 -10.71642 -10.62754 -10.58064 -10.18025 -9.73024 -9.59551 -9.34244 -9.00131 -8.94933 -7.64059 -7.06671 -6.88849 -4.46677 1.81281 2.50375 2.59690 2.67988 2.91933 3.15735 3.26508 3.36128 3.51215 4.02804 4.11047 4.14182 4.30544 4.50704 4.55453 4.60749 4.72527 4.92600 5.03731 5.09795 5.34540 5.44285 5.46171 5.53645 5.73019 5.83293 5.99767 6.08021 6.11281 6.38052 6.44321 6.51896 6.55865 6.74557 6.79219 7.03959 7.31692 7.41370 7.47973 7.62602 7.73261 7.89527 8.13177 8.28313 8.38719 8.66551 8.82663 8.89891 10.13798 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.037092 B = 0.002094 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.707638 B =13371.421617 C =13689.517904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.082 3.918 3 Si 0.915 3.085 4 H -0.272 1.272 5 H -0.295 1.295 6 H -0.241 1.241 7 C -0.447 4.447 8 H 0.089 0.911 9 C 0.106 3.894 10 C -0.243 4.243 11 C -0.068 4.068 12 C -0.229 4.229 13 C 0.186 3.814 14 N -0.682 5.682 15 C 0.700 3.300 16 O -0.570 6.570 17 N -0.739 5.739 18 C 0.146 3.854 19 C -0.140 4.140 20 C -0.101 4.101 21 C -0.101 4.101 22 C 0.476 3.524 23 O -0.510 6.510 24 O -0.522 6.522 25 C -0.149 4.149 26 C -0.234 4.234 27 H 0.284 0.716 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.398 0.602 32 H 0.394 0.606 33 H 0.117 0.883 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.410 0.590 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.761 -12.763 6.182 26.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.136 4.136 3 Si 0.743 3.257 4 H -0.199 1.199 5 H -0.223 1.223 6 H -0.164 1.164 7 C -0.476 4.476 8 H 0.107 0.893 9 C 0.103 3.897 10 C -0.263 4.263 11 C -0.087 4.087 12 C -0.250 4.250 13 C 0.093 3.907 14 N -0.328 5.328 15 C 0.401 3.599 16 O -0.446 6.446 17 N -0.394 5.394 18 C 0.040 3.960 19 C -0.178 4.178 20 C -0.120 4.120 21 C -0.139 4.139 22 C 0.318 3.682 23 O -0.398 6.398 24 O -0.334 6.334 25 C -0.188 4.188 26 C -0.257 4.257 27 H 0.095 0.905 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.127 0.873 31 H 0.232 0.768 32 H 0.228 0.772 33 H 0.135 0.865 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.269 0.731 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 22.326 -12.309 4.975 25.975 hybrid contribution 0.647 0.619 0.695 1.134 sum 22.973 -11.689 5.670 26.392 Atomic orbital electron populations 1.69667 1.07994 1.30112 1.36215 1.26154 0.94809 1.01715 0.90910 0.86280 0.81216 0.79569 0.78663 1.19873 1.22321 1.16417 1.19434 0.91534 0.95618 1.41001 0.89269 1.17473 0.93012 0.90347 0.88914 1.20989 0.95080 1.03954 1.06268 1.20476 0.93576 0.96827 0.97804 1.20372 0.99207 0.97981 1.07483 1.17294 0.88845 0.87578 0.96985 1.42647 1.28352 1.41405 1.20436 1.16012 0.79773 0.79445 0.84717 1.90946 1.75404 1.61359 1.16856 1.45117 1.28161 1.48501 1.17601 1.22265 0.83100 0.92789 0.97841 1.23442 0.94385 0.97506 1.02514 1.22255 0.92906 0.97494 0.99329 1.21383 0.87504 1.03486 1.01510 1.23599 0.87352 0.76629 0.80624 1.90756 1.85312 1.37271 1.26415 1.84538 1.20983 1.74335 1.53554 1.23629 0.96202 0.96604 1.02329 1.20646 0.90268 1.05336 1.09408 0.90543 0.88400 0.88507 0.87316 0.76813 0.77224 0.86477 0.90205 0.89273 0.87607 0.87352 0.87445 0.73142 0.89807 0.90476 0.87949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.97 13.93 55.55 0.77 -21.19 16 2 C 0.08 2.18 5.46 -17.34 -0.09 2.08 16 3 Si 0.91 21.17 24.37 -169.99 -4.14 17.02 16 4 H -0.27 -6.16 6.76 56.52 0.38 -5.78 16 5 H -0.30 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.24 -5.67 6.51 56.52 0.37 -5.30 16 7 C -0.45 -12.17 9.61 -37.74 -0.36 -12.53 16 8 H 0.09 2.53 8.06 -52.48 -0.42 2.11 16 9 C 0.11 2.73 5.18 -106.85 -0.55 2.18 16 10 C -0.24 -6.06 6.94 -38.84 -0.27 -6.33 16 11 C -0.07 -1.57 10.02 -39.69 -0.40 -1.97 16 12 C -0.23 -5.24 8.66 -39.10 -0.34 -5.58 16 13 C 0.19 4.01 6.27 -83.76 -0.52 3.49 16 14 N -0.68 -11.41 5.34 -14.27 -0.08 -11.48 16 15 C 0.70 11.59 8.30 -86.92 -0.72 10.87 16 16 O -0.57 -11.97 13.62 5.29 0.07 -11.90 16 17 N -0.74 -8.16 5.37 -57.79 -0.31 -8.47 16 18 C 0.15 1.44 4.24 -67.03 -0.28 1.16 16 19 C -0.14 -0.85 7.40 -25.92 -0.19 -1.04 16 20 C -0.10 -0.67 3.11 -89.81 -0.28 -0.95 16 21 C -0.10 -0.50 5.64 -27.88 -0.16 -0.65 16 22 C 0.48 3.46 8.33 36.01 0.30 3.76 16 23 O -0.51 -5.61 16.55 -18.76 -0.31 -5.92 16 24 O -0.52 -2.77 13.42 -39.24 -0.53 -3.30 16 25 C -0.15 -1.32 7.45 -25.83 -0.19 -1.51 16 26 C -0.23 -5.43 9.70 -38.68 -0.38 -5.81 16 27 H 0.28 6.95 8.30 -40.82 -0.34 6.62 16 28 H 0.10 2.42 4.22 -52.49 -0.22 2.20 16 29 H 0.10 1.98 8.06 -52.49 -0.42 1.56 16 30 H 0.11 2.48 6.40 -52.49 -0.34 2.14 16 31 H 0.40 5.10 8.83 -40.82 -0.36 4.74 16 32 H 0.39 3.02 8.75 -40.82 -0.36 2.66 16 33 H 0.12 1.44 7.46 -51.93 -0.39 1.05 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.09 0.39 8.08 -51.93 -0.42 -0.03 16 36 H 0.11 0.83 7.73 -51.93 -0.40 0.43 16 37 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.11 0.39 7.87 -51.93 -0.41 -0.02 16 39 H 0.41 0.69 9.10 45.56 0.41 1.11 16 40 H 0.08 0.66 7.92 -51.93 -0.41 0.25 16 41 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.10 2.19 8.06 -52.48 -0.42 1.76 16 LS Contribution 352.53 15.07 5.31 5.31 Total: -1.00 -34.83 352.53 -8.26 -43.10 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -4.61 Total: 9.67 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -4.44 Total: -12.85 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 0.39 Total: -41.14 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.77 Total: -21.11 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.14 Total: 17.02 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.83 -8.26 -43.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601078311.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.390 kcal (2) G-P(sol) polarization free energy of solvation -34.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds