Wall clock time and date at job start Tue Mar 31 2020 12:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86791 * 119.99874 * 2 1 4 4 H 1.48504 * 109.47219 * 275.31151 * 3 2 1 5 5 H 1.48498 * 109.47211 * 35.31078 * 3 2 1 6 6 H 1.48504 * 109.47342 * 155.31130 * 3 2 1 7 7 C 1.39932 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00117 * 346.28503 * 7 2 1 9 9 C 1.41401 * 119.99845 * 166.28619 * 7 2 1 10 10 C 1.40780 * 120.21228 * 331.39873 * 9 7 2 11 11 C 1.37642 * 119.88536 * 180.02562 * 10 9 7 12 12 C 1.38532 * 120.32148 * 359.75271 * 11 10 9 13 13 C 1.39247 * 120.43016 * 0.50985 * 12 11 10 14 14 N 1.39953 * 119.94884 * 179.76512 * 13 12 11 15 15 C 1.34774 * 120.00041 * 326.48147 * 14 13 12 16 16 O 1.21591 * 120.00044 * 354.96601 * 15 14 13 17 17 N 1.34776 * 120.00324 * 174.96999 * 15 14 13 18 18 C 1.46500 * 120.00251 * 180.02562 * 17 15 14 19 19 C 1.53773 * 113.61402 * 204.99674 * 18 17 15 20 20 C 1.53785 * 87.08276 * 219.93612 * 19 18 17 21 21 C 1.52997 * 113.61417 * 139.98225 * 20 19 18 22 22 C 1.50700 * 109.47060 * 176.52912 * 21 20 19 23 23 O 1.20832 * 119.99862 * 0.02562 * 22 21 20 24 24 O 1.34224 * 120.00140 * 180.02562 * 22 21 20 25 25 C 1.53775 * 87.17074 * 25.39163 * 20 19 18 26 26 C 1.38279 * 120.10099 * 359.48730 * 13 12 11 27 27 H 0.97001 * 120.00258 * 0.02562 * 1 2 3 28 28 H 1.07993 * 120.05670 * 0.05205 * 10 9 7 29 29 H 1.07998 * 119.83664 * 179.97438 * 11 10 9 30 30 H 1.07999 * 119.78826 * 180.26711 * 12 11 10 31 31 H 0.97002 * 119.99742 * 146.48897 * 14 13 12 32 32 H 0.97000 * 119.99430 * 359.97438 * 17 15 14 33 33 H 1.08993 * 112.84878 * 336.19950 * 18 17 15 34 34 H 1.09001 * 113.61283 * 105.38583 * 19 18 17 35 35 H 1.08999 * 113.61965 * 334.48489 * 19 18 17 36 36 H 1.09001 * 113.61393 * 270.80066 * 20 19 18 37 37 H 1.09004 * 109.46922 * 56.53227 * 21 20 19 38 38 H 1.08997 * 109.47229 * 296.52786 * 21 20 19 39 39 H 0.96705 * 117.00236 * 180.02562 * 24 22 21 40 40 H 1.09000 * 113.61637 * 89.15563 * 25 20 19 41 41 H 1.09005 * 113.61687 * 220.06218 * 25 20 19 42 42 H 1.08005 * 120.15736 * 180.23530 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3775 2.1112 -1.3941 5 1 1.5003 2.6176 0.8092 6 1 3.5915 1.4104 0.5848 7 6 2.0080 -1.2118 -0.0005 8 1 1.4911 -2.1340 0.2208 9 6 3.3918 -1.2291 -0.2909 10 6 3.9523 -0.2460 -1.1283 11 6 5.3000 -0.2695 -1.4068 12 6 6.1095 -1.2534 -0.8629 13 6 5.5682 -2.2354 -0.0374 14 7 6.3945 -3.2275 0.5027 15 6 7.4497 -3.6826 -0.2014 16 8 7.6314 -3.2989 -1.3408 17 7 8.3036 -4.5631 0.3574 18 6 9.4510 -5.0573 -0.4078 19 6 9.9594 -6.4304 0.0621 20 6 11.3826 -5.8910 -0.1580 21 6 12.3745 -6.3188 0.9255 22 6 13.7502 -5.8133 0.5750 23 8 13.9199 -5.1758 -0.4373 24 8 14.7872 -6.0712 1.3874 25 6 10.8012 -4.4842 0.0599 26 6 4.2165 -2.2286 0.2543 27 1 -0.4850 0.8400 -0.0004 28 1 3.3260 0.5255 -1.5510 29 1 5.7291 0.4848 -2.0497 30 1 7.1666 -1.2612 -1.0838 31 1 6.2076 -3.5877 1.3838 32 1 8.1588 -4.8689 1.2664 33 1 9.3005 -4.9927 -1.4854 34 1 9.6935 -7.2473 -0.6087 35 1 9.7310 -6.6469 1.1057 36 1 11.7608 -6.0558 -1.1669 37 1 12.3932 -7.4066 0.9919 38 1 12.0675 -5.9014 1.8844 39 1 15.6502 -5.7259 1.1208 40 1 10.8033 -4.1675 1.1028 41 1 11.2138 -3.7321 -0.6127 42 1 3.7964 -2.9876 0.8976 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601078311.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:58 Heat of formation + Delta-G solvation = -108.136359 kcal Electronic energy + Delta-G solvation = -25176.899055 eV Core-core repulsion = 21314.031185 eV Total energy + Delta-G solvation = -3862.867870 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.71805 -41.21758 -39.96256 -38.99666 -37.03100 -36.08643 -35.16059 -34.59005 -32.15867 -31.37680 -30.06375 -27.02610 -26.63205 -25.26664 -23.52878 -22.86342 -22.03874 -21.63584 -20.58662 -19.56047 -19.28051 -18.88839 -17.88835 -17.68389 -17.23442 -16.95525 -16.65353 -16.35514 -16.20262 -15.90949 -15.52959 -15.26950 -14.55801 -14.40051 -14.22914 -14.15610 -13.88024 -13.48369 -13.36639 -13.22410 -12.88035 -12.85502 -12.57780 -12.48414 -12.41113 -12.05992 -11.92358 -11.79271 -11.54025 -11.46279 -11.29961 -11.22618 -11.17351 -10.70905 -10.01177 -9.54591 -8.86966 -8.78929 -6.51112 0.72832 0.79958 1.29755 1.29863 1.43363 1.52243 1.68129 2.11070 2.16069 2.24449 2.66660 3.28648 3.51736 3.52407 3.61115 3.83931 3.92157 4.17245 4.28982 4.44592 4.52007 4.60658 4.67286 4.68954 4.80624 4.83853 4.87225 4.93543 4.98549 5.02525 5.11145 5.15963 5.32514 5.36076 5.60102 5.64293 5.69855 5.72329 5.82159 5.94715 6.09816 6.26800 6.42024 6.71503 6.83795 7.05048 7.10598 7.58248 8.20971 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.037092 B = 0.002094 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.707638 B =13371.421617 C =13689.517904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.046 3.954 3 Si 0.968 3.032 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.247 1.247 7 C -0.477 4.477 8 H 0.060 0.940 9 C 0.088 3.912 10 C -0.259 4.259 11 C -0.071 4.071 12 C -0.230 4.230 13 C 0.195 3.805 14 N -0.673 5.673 15 C 0.696 3.304 16 O -0.618 6.618 17 N -0.712 5.712 18 C 0.128 3.872 19 C -0.115 4.115 20 C -0.093 4.093 21 C -0.097 4.097 22 C 0.476 3.524 23 O -0.558 6.558 24 O -0.518 6.518 25 C -0.149 4.149 26 C -0.239 4.239 27 H 0.293 0.707 28 H 0.098 0.902 29 H 0.123 0.877 30 H 0.111 0.889 31 H 0.419 0.581 32 H 0.416 0.584 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.121 0.879 36 H 0.088 0.912 37 H 0.138 0.862 38 H 0.131 0.869 39 H 0.424 0.576 40 H 0.100 0.900 41 H 0.045 0.955 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.058 -13.994 7.988 29.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.168 4.168 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.171 1.171 7 C -0.507 4.507 8 H 0.079 0.921 9 C 0.085 3.915 10 C -0.279 4.279 11 C -0.090 4.090 12 C -0.251 4.251 13 C 0.101 3.899 14 N -0.321 5.321 15 C 0.397 3.603 16 O -0.497 6.497 17 N -0.368 5.368 18 C 0.023 3.977 19 C -0.153 4.153 20 C -0.112 4.112 21 C -0.134 4.134 22 C 0.321 3.679 23 O -0.449 6.449 24 O -0.331 6.331 25 C -0.188 4.188 26 C -0.261 4.261 27 H 0.104 0.896 28 H 0.115 0.885 29 H 0.141 0.859 30 H 0.129 0.871 31 H 0.257 0.743 32 H 0.253 0.747 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.140 0.860 36 H 0.106 0.894 37 H 0.156 0.844 38 H 0.149 0.851 39 H 0.285 0.715 40 H 0.119 0.881 41 H 0.064 0.936 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 24.669 -13.610 6.858 28.997 hybrid contribution 0.165 0.857 0.131 0.882 sum 24.833 -12.753 6.989 28.778 Atomic orbital electron populations 1.69692 1.08997 1.31368 1.37758 1.26806 0.95431 1.04175 0.90391 0.85465 0.79732 0.76444 0.79112 1.18996 1.20798 1.17105 1.19427 0.92595 0.95165 1.43496 0.92144 1.17647 0.92738 0.91621 0.89488 1.21066 0.95895 1.04160 1.06781 1.20783 0.92983 0.97451 0.97773 1.20605 0.99343 0.97998 1.07203 1.17270 0.88827 0.87957 0.95870 1.42439 1.27880 1.40465 1.21302 1.16226 0.79993 0.79920 0.84161 1.90920 1.76477 1.63214 1.19123 1.44933 1.26913 1.46478 1.18447 1.22464 0.82799 0.96062 0.96406 1.23370 0.92552 0.94968 1.04392 1.22104 0.93959 0.95777 0.99405 1.21466 0.85301 1.05252 1.01344 1.24113 0.88460 0.75494 0.79821 1.90753 1.86093 1.39596 1.28483 1.84510 1.21686 1.73984 1.52947 1.23645 0.95491 0.97258 1.02401 1.20797 0.90825 1.05033 1.09462 0.89633 0.88486 0.85871 0.87130 0.74341 0.74674 0.89652 0.89405 0.86049 0.89389 0.84440 0.85126 0.71479 0.88147 0.93648 0.86610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.98 13.93 21.82 0.30 -46.67 16 2 C 0.05 2.49 5.46 85.25 0.47 2.96 16 3 Si 0.97 43.61 24.37 68.60 1.67 45.29 16 4 H -0.26 -11.44 6.76 99.48 0.67 -10.77 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.25 -11.31 6.51 99.48 0.65 -10.66 16 7 C -0.48 -26.82 9.61 23.46 0.23 -26.60 16 8 H 0.06 3.61 8.06 -2.91 -0.02 3.59 16 9 C 0.09 4.58 5.18 -21.31 -0.11 4.47 16 10 C -0.26 -12.82 6.94 22.75 0.16 -12.66 16 11 C -0.07 -3.21 10.02 22.20 0.22 -2.99 16 12 C -0.23 -10.25 8.66 22.58 0.20 -10.06 16 13 C 0.20 8.19 6.27 38.10 0.24 8.43 16 14 N -0.67 -21.11 5.34 -317.33 -1.70 -22.81 16 15 C 0.70 21.96 8.30 179.06 1.49 23.44 16 16 O -0.62 -25.77 13.62 -4.00 -0.05 -25.82 16 17 N -0.71 -13.90 5.37 -455.02 -2.44 -16.34 16 18 C 0.13 2.32 4.24 45.58 0.19 2.51 16 19 C -0.11 -0.97 7.40 31.12 0.23 -0.74 16 20 C -0.09 -1.03 3.11 -10.27 -0.03 -1.07 16 21 C -0.10 -0.59 5.64 29.85 0.17 -0.42 16 22 C 0.48 6.00 8.33 71.24 0.59 6.59 16 23 O -0.56 -12.09 16.55 21.94 0.36 -11.72 16 24 O -0.52 -4.25 13.42 -51.36 -0.69 -4.94 16 25 C -0.15 -2.43 7.45 31.18 0.23 -2.20 16 26 C -0.24 -10.97 9.70 22.85 0.22 -10.74 16 27 H 0.29 14.56 8.30 -92.71 -0.77 13.79 16 28 H 0.10 4.75 4.22 -2.91 -0.01 4.74 16 29 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 30 H 0.11 4.93 6.40 -2.91 -0.02 4.91 16 31 H 0.42 9.51 8.83 -92.71 -0.82 8.69 16 32 H 0.42 4.66 8.75 -92.71 -0.81 3.85 16 33 H 0.09 2.14 7.46 -2.39 -0.02 2.12 16 34 H 0.09 0.69 8.14 -2.39 -0.02 0.68 16 35 H 0.12 0.33 8.08 -2.39 -0.02 0.31 16 36 H 0.09 1.33 7.73 -2.39 -0.02 1.31 16 37 H 0.14 0.13 8.14 -2.38 -0.02 0.11 16 38 H 0.13 0.28 7.87 -2.39 -0.02 0.26 16 39 H 0.42 0.68 9.10 -74.05 -0.67 0.01 16 40 H 0.10 1.29 7.92 -2.39 -0.02 1.28 16 41 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 42 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -79.05 352.53 0.65 -78.41 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: -1.30 Total: 23.70 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: 4.49 Total: -19.08 kcal Atomic # 7 Polarization: -81.99 SS G_CDS: -3.83 Total: -85.83 kcal Atomic # 8 Polarization: -42.11 SS G_CDS: -0.38 Total: -42.49 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.67 Total: 45.29 kcal Total: -79.05 0.65 -78.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601078311.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.730 kcal (2) G-P(sol) polarization free energy of solvation -79.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds