Wall clock time and date at job start Tue Mar 31 2020 13:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50693 * 120.00007 * 2 1 4 4 N 1.46496 * 109.47464 * 125.00033 * 3 2 1 5 5 C 1.46505 * 119.99740 * 270.00149 * 4 3 2 6 6 C 1.50698 * 109.47016 * 269.99507 * 5 4 3 7 7 H 1.08000 * 120.00115 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99905 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99874 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 119.99842 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47376 * 60.00204 * 10 8 6 12 12 H 1.48506 * 109.46922 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47539 * 299.99841 * 10 8 6 14 14 C 1.34771 * 120.00328 * 89.99424 * 4 3 2 15 15 O 1.21583 * 120.00302 * 180.02562 * 14 4 3 16 16 N 1.34780 * 119.99907 * 0.02562 * 14 4 3 17 17 C 1.39397 * 120.00147 * 175.37595 * 16 14 4 18 18 C 1.39177 * 119.92062 * 35.89804 * 17 16 14 19 19 C 1.37622 * 120.07857 * 180.27650 * 18 17 16 20 20 C 1.39834 * 119.91754 * 359.47688 * 19 18 17 21 21 C 1.47446 * 120.07880 * 180.22904 * 20 19 18 22 22 O 1.21504 * 120.00416 * 173.50488 * 21 20 19 23 23 O 1.34750 * 119.99946 * 353.50557 * 21 20 19 24 24 C 1.39801 * 119.84331 * 0.25433 * 20 19 18 25 25 C 1.50703 * 120.03936 * 180.02562 * 24 20 19 26 26 C 1.37650 * 119.92085 * 359.97438 * 24 20 19 27 27 H 1.07996 * 120.00156 * 0.02562 * 1 2 3 28 28 H 1.08000 * 119.99819 * 180.02562 * 1 2 3 29 29 H 1.08002 * 119.99539 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47342 * 4.99764 * 3 2 1 31 31 H 1.09005 * 109.47419 * 245.00228 * 3 2 1 32 32 H 1.09001 * 109.47182 * 29.99891 * 5 4 3 33 33 H 1.09006 * 109.47043 * 149.99785 * 5 4 3 34 34 H 0.97006 * 120.00039 * 180.02562 * 9 8 6 35 35 H 0.96995 * 119.99954 * 355.36775 * 16 14 4 36 36 H 1.07992 * 119.96267 * 0.02562 * 18 17 16 37 37 H 1.08001 * 120.04254 * 179.75017 * 19 18 17 38 38 H 0.96708 * 117.00615 * 179.97438 * 23 21 20 39 39 H 1.09002 * 109.47291 * 83.07262 * 25 24 20 40 40 H 1.08996 * 109.46785 * 203.07409 * 25 24 20 41 41 H 1.09000 * 109.47193 * 323.07435 * 25 24 20 42 42 H 1.08003 * 119.96506 * 180.02562 * 26 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5588 1.8650 2.4248 6 6 2.8442 3.3437 2.4803 7 1 3.3033 3.8371 1.6364 8 6 2.5193 4.0666 3.6086 9 7 1.9607 3.4656 4.6364 10 14 2.8724 5.8996 3.6771 11 1 2.1357 6.5868 2.5862 12 1 2.4327 6.4397 4.9887 13 1 4.3301 6.1295 3.5112 14 6 4.2496 0.8661 0.9824 15 8 5.0216 0.8880 1.9215 16 7 4.6499 0.3761 -0.2076 17 6 5.9751 -0.0162 -0.3898 18 6 6.6722 -0.6139 0.6561 19 6 7.9824 -0.9972 0.4816 20 6 8.6097 -0.7955 -0.7517 21 6 10.0117 -1.2095 -0.9441 22 8 10.5191 -1.1431 -2.0462 23 8 10.7304 -1.6614 0.1023 24 6 7.9046 -0.2000 -1.8017 25 6 8.5762 0.0190 -3.1330 26 6 6.5959 0.1852 -1.6186 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6213 1.4026 -0.9314 32 1 1.4887 1.6966 2.5459 33 1 3.0989 1.3604 3.2260 34 1 1.7318 3.9743 5.4300 35 1 4.0159 0.2962 -0.9373 36 1 6.1857 -0.7733 1.6070 37 1 8.5240 -1.4573 1.2949 38 1 11.6453 -1.9216 -0.0729 39 1 8.5274 -0.8983 -3.7198 40 1 8.0679 0.8206 -3.6688 41 1 9.6190 0.2930 -2.9731 42 1 6.0503 0.6450 -2.4294 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602722856.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:29 Heat of formation + Delta-G solvation = -61.036187 kcal Electronic energy + Delta-G solvation = -26067.612790 eV Core-core repulsion = 22206.787337 eV Total energy + Delta-G solvation = -3860.825453 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.79745 -40.09683 -38.45542 -36.31133 -35.90542 -34.72367 -33.21194 -32.52165 -32.12040 -30.15188 -27.56489 -27.25509 -25.67703 -24.16369 -22.78681 -22.36562 -21.06207 -20.06324 -19.32706 -18.21415 -17.84269 -17.25868 -16.84318 -16.52501 -15.83395 -15.32873 -15.21674 -14.76998 -14.56874 -14.44032 -14.23425 -13.64698 -13.53998 -13.30620 -13.09520 -12.90363 -12.61322 -12.44288 -12.21884 -12.06547 -11.84068 -11.59154 -11.35525 -11.24162 -11.16536 -10.96152 -10.63304 -10.30799 -10.22091 -10.20172 -9.71448 -9.40024 -9.30872 -8.79782 -8.46856 -8.19447 -7.75938 -6.08321 -4.13323 0.68090 1.38188 2.30751 2.48399 2.95731 3.07518 3.29725 3.34620 3.38171 3.56552 3.88731 4.29251 4.44749 4.74193 4.76500 5.06047 5.07438 5.18154 5.25773 5.27235 5.38183 5.41268 5.46867 5.66621 5.69425 5.82292 5.89033 6.03015 6.05429 6.20048 6.28956 6.40230 6.50288 6.55382 6.65709 6.69950 6.83526 7.05101 7.27065 7.40221 7.54904 7.82265 7.88383 8.17207 8.41404 8.86048 9.08015 9.51988 10.99611 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013605 B = 0.003275 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.581186 B = 8547.851112 C = 9637.282505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.175 4.175 3 C 0.135 3.865 4 N -0.599 5.599 5 C 0.262 3.738 6 C -0.530 4.530 7 H 0.057 0.943 8 C 0.063 3.937 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.697 3.303 15 O -0.561 6.561 16 N -0.695 5.695 17 C 0.229 3.771 18 C -0.145 4.145 19 C -0.034 4.034 20 C -0.171 4.171 21 C 0.531 3.469 22 O -0.520 6.520 23 O -0.514 6.514 24 C 0.005 3.995 25 C -0.120 4.120 26 C -0.175 4.175 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.036 0.964 33 H 0.046 0.954 34 H 0.264 0.736 35 H 0.405 0.595 36 H 0.151 0.849 37 H 0.138 0.862 38 H 0.410 0.590 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.091 0.909 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.940 -10.564 -14.091 18.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.195 4.195 3 C 0.011 3.989 4 N -0.333 5.333 5 C 0.143 3.857 6 C -0.569 4.569 7 H 0.075 0.925 8 C -0.139 4.139 9 N -0.532 5.532 10 Si 0.726 3.274 11 H -0.203 1.203 12 H -0.211 1.211 13 H -0.202 1.202 14 C 0.399 3.601 15 O -0.437 6.437 16 N -0.343 5.343 17 C 0.130 3.870 18 C -0.165 4.165 19 C -0.053 4.053 20 C -0.173 4.173 21 C 0.377 3.623 22 O -0.411 6.411 23 O -0.325 6.325 24 C 0.003 3.997 25 C -0.176 4.176 26 C -0.196 4.196 27 H 0.118 0.882 28 H 0.113 0.887 29 H 0.123 0.877 30 H 0.111 0.889 31 H 0.086 0.914 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.242 0.758 36 H 0.169 0.831 37 H 0.156 0.844 38 H 0.268 0.732 39 H 0.094 0.906 40 H 0.080 0.920 41 H 0.109 0.891 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.026 -10.284 -13.324 18.238 hybrid contribution 0.288 0.865 -0.309 0.962 sum 7.314 -9.419 -13.632 18.112 Atomic orbital electron populations 1.23844 0.95799 1.01913 0.99778 1.23434 0.96574 0.98838 1.00608 1.20567 0.93258 0.95845 0.89247 1.47625 1.08670 1.62629 1.14362 1.19266 0.95335 0.93642 0.77459 1.21399 1.40832 0.93323 1.01332 0.92502 1.24911 0.94972 0.98777 0.95268 1.69918 1.41857 1.36313 1.05159 0.86559 0.78873 0.84825 0.77171 1.20260 1.21140 1.20168 1.15951 0.83383 0.78648 0.82089 1.90912 1.52553 1.61525 1.38684 1.43022 1.09228 1.66653 1.15422 1.17840 0.84060 0.91040 0.94016 1.21401 0.95004 0.99506 1.00621 1.21305 0.94007 0.94688 0.95307 1.18748 0.91011 1.11147 0.96374 1.20870 0.86847 0.73245 0.81303 1.90826 1.72498 1.51877 1.25890 1.84606 1.30212 1.76990 1.40718 1.19653 0.92493 0.92661 0.94855 1.21086 1.02013 1.02007 0.92523 1.20676 0.94547 1.06664 0.97748 0.88156 0.88654 0.87746 0.88856 0.91416 0.94636 0.93638 0.92598 0.75799 0.83096 0.84392 0.73164 0.90582 0.92042 0.89079 0.84940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.07 14.32 29.01 0.42 -1.66 16 2 C -0.18 -2.26 9.85 -36.03 -0.35 -2.62 16 3 C 0.13 2.01 5.57 -5.20 -0.03 1.98 16 4 N -0.60 -11.98 2.44 -182.18 -0.44 -12.43 16 5 C 0.26 6.59 5.16 -5.19 -0.03 6.56 16 6 C -0.53 -14.63 9.39 -34.44 -0.32 -14.96 16 7 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -26.03 13.29 55.43 0.74 -25.30 16 10 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 C 0.70 13.94 8.11 -86.92 -0.70 13.24 16 15 O -0.56 -13.54 13.38 5.29 0.07 -13.47 16 16 N -0.69 -10.40 5.15 -14.22 -0.07 -10.48 16 17 C 0.23 3.36 6.28 -83.74 -0.53 2.83 16 18 C -0.14 -2.23 8.66 -39.46 -0.34 -2.57 16 19 C -0.03 -0.46 9.60 -39.21 -0.38 -0.83 16 20 C -0.17 -2.23 5.88 -104.97 -0.62 -2.84 16 21 C 0.53 6.44 8.19 34.48 0.28 6.72 16 22 O -0.52 -7.01 14.13 -19.27 -0.27 -7.28 16 23 O -0.51 -4.82 12.69 -40.63 -0.52 -5.33 16 24 C 0.00 0.06 5.91 -104.25 -0.62 -0.56 16 25 C -0.12 -1.29 8.71 36.01 0.31 -0.97 16 26 C -0.18 -2.17 9.57 -39.46 -0.38 -2.54 16 27 H 0.10 1.17 7.84 -52.49 -0.41 0.76 16 28 H 0.10 0.97 8.06 -52.49 -0.42 0.55 16 29 H 0.10 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.09 1.46 7.72 -51.93 -0.40 1.06 16 31 H 0.07 0.81 6.44 -51.93 -0.33 0.47 16 32 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 33 H 0.05 1.30 7.42 -51.93 -0.39 0.91 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.40 4.71 6.62 -40.82 -0.27 4.44 16 36 H 0.15 2.62 6.26 -52.49 -0.33 2.29 16 37 H 0.14 1.61 7.62 -52.49 -0.40 1.21 16 38 H 0.41 1.87 9.11 45.56 0.42 2.28 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.55 8.03 -51.93 -0.42 0.13 16 41 H 0.09 1.09 5.88 -51.93 -0.31 0.78 16 42 H 0.13 1.31 8.05 -52.48 -0.42 0.89 16 LS Contribution 362.03 15.07 5.46 5.46 Total: -1.00 -34.00 362.03 -7.94 -41.93 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -4.49 Total: 6.88 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: -3.38 Total: 3.45 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: 0.22 Total: -48.20 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -0.72 Total: -26.08 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.00 -7.94 -41.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602722856.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.103 kcal (2) G-P(sol) polarization free energy of solvation -33.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds