Wall clock time and date at job start Tue Mar 31 2020 13:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50693 * 120.00007 * 2 1 4 4 N 1.46496 * 109.47464 * 125.00033 * 3 2 1 5 5 C 1.46505 * 119.99740 * 270.00149 * 4 3 2 6 6 C 1.50698 * 109.47016 * 269.99507 * 5 4 3 7 7 H 1.08000 * 120.00115 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99905 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99874 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 119.99842 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47376 * 60.00204 * 10 8 6 12 12 H 1.48506 * 109.46922 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47539 * 299.99841 * 10 8 6 14 14 C 1.34771 * 120.00328 * 89.99424 * 4 3 2 15 15 O 1.21583 * 120.00302 * 180.02562 * 14 4 3 16 16 N 1.34780 * 119.99907 * 0.02562 * 14 4 3 17 17 C 1.39397 * 120.00147 * 175.37595 * 16 14 4 18 18 C 1.39177 * 119.92062 * 35.89804 * 17 16 14 19 19 C 1.37622 * 120.07857 * 180.27650 * 18 17 16 20 20 C 1.39834 * 119.91754 * 359.47688 * 19 18 17 21 21 C 1.47446 * 120.07880 * 180.22904 * 20 19 18 22 22 O 1.21504 * 120.00416 * 173.50488 * 21 20 19 23 23 O 1.34750 * 119.99946 * 353.50557 * 21 20 19 24 24 C 1.39801 * 119.84331 * 0.25433 * 20 19 18 25 25 C 1.50703 * 120.03936 * 180.02562 * 24 20 19 26 26 C 1.37650 * 119.92085 * 359.97438 * 24 20 19 27 27 H 1.07996 * 120.00156 * 0.02562 * 1 2 3 28 28 H 1.08000 * 119.99819 * 180.02562 * 1 2 3 29 29 H 1.08002 * 119.99539 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47342 * 4.99764 * 3 2 1 31 31 H 1.09005 * 109.47419 * 245.00228 * 3 2 1 32 32 H 1.09001 * 109.47182 * 29.99891 * 5 4 3 33 33 H 1.09006 * 109.47043 * 149.99785 * 5 4 3 34 34 H 0.97006 * 120.00039 * 180.02562 * 9 8 6 35 35 H 0.96995 * 119.99954 * 355.36775 * 16 14 4 36 36 H 1.07992 * 119.96267 * 0.02562 * 18 17 16 37 37 H 1.08001 * 120.04254 * 179.75017 * 19 18 17 38 38 H 0.96708 * 117.00615 * 179.97438 * 23 21 20 39 39 H 1.09002 * 109.47291 * 83.07262 * 25 24 20 40 40 H 1.08996 * 109.46785 * 203.07409 * 25 24 20 41 41 H 1.09000 * 109.47193 * 323.07435 * 25 24 20 42 42 H 1.08003 * 119.96506 * 180.02562 * 26 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5588 1.8650 2.4248 6 6 2.8442 3.3437 2.4803 7 1 3.3033 3.8371 1.6364 8 6 2.5193 4.0666 3.6086 9 7 1.9607 3.4656 4.6364 10 14 2.8724 5.8996 3.6771 11 1 2.1357 6.5868 2.5862 12 1 2.4327 6.4397 4.9887 13 1 4.3301 6.1295 3.5112 14 6 4.2496 0.8661 0.9824 15 8 5.0216 0.8880 1.9215 16 7 4.6499 0.3761 -0.2076 17 6 5.9751 -0.0162 -0.3898 18 6 6.6722 -0.6139 0.6561 19 6 7.9824 -0.9972 0.4816 20 6 8.6097 -0.7955 -0.7517 21 6 10.0117 -1.2095 -0.9441 22 8 10.5191 -1.1431 -2.0462 23 8 10.7304 -1.6614 0.1023 24 6 7.9046 -0.2000 -1.8017 25 6 8.5762 0.0190 -3.1330 26 6 6.5959 0.1852 -1.6186 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6213 1.4026 -0.9314 32 1 1.4887 1.6966 2.5459 33 1 3.0989 1.3604 3.2260 34 1 1.7318 3.9743 5.4300 35 1 4.0159 0.2962 -0.9373 36 1 6.1857 -0.7733 1.6070 37 1 8.5240 -1.4573 1.2949 38 1 11.6453 -1.9216 -0.0729 39 1 8.5274 -0.8983 -3.7198 40 1 8.0679 0.8206 -3.6688 41 1 9.6190 0.2930 -2.9731 42 1 6.0503 0.6450 -2.4294 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001602722856.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:28 Heat of formation + Delta-G solvation = -82.655263 kcal Electronic energy + Delta-G solvation = -26068.550263 eV Core-core repulsion = 22206.787337 eV Total energy + Delta-G solvation = -3861.762927 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.97449 -41.26527 -39.60191 -37.42981 -37.09680 -36.08860 -34.98757 -33.79647 -33.39184 -31.38216 -29.34675 -28.21784 -27.01283 -25.62107 -24.30807 -23.37564 -22.29404 -21.17585 -20.62526 -19.34707 -19.00590 -18.57135 -18.26455 -18.10934 -16.86182 -16.81306 -16.54599 -16.10202 -15.93145 -15.84681 -15.41640 -14.73144 -14.65164 -14.48991 -14.35740 -14.18259 -14.03428 -13.62301 -13.38224 -13.28007 -13.09117 -13.04199 -12.84565 -12.57525 -12.45690 -12.28849 -12.27318 -12.19067 -11.71721 -11.45015 -11.27646 -10.92481 -10.62772 -10.34962 -9.83640 -9.64805 -9.16352 -8.20929 -6.35207 -0.37292 0.34230 1.23216 1.37932 1.41860 1.47329 1.49029 1.73075 2.12455 2.18839 2.39566 2.75054 2.98448 3.09636 3.75432 3.80865 3.99781 4.09773 4.16633 4.20301 4.32430 4.40552 4.44532 4.76473 4.77748 4.85828 4.87671 4.92884 5.03970 5.06960 5.19832 5.23345 5.26910 5.41399 5.48709 5.50162 5.68049 5.69391 5.73608 5.89427 5.91230 6.02465 6.06706 6.73236 6.96507 7.03393 7.31295 7.56086 8.85653 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013605 B = 0.003275 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.581186 B = 8547.851112 C = 9637.282505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.189 4.189 3 C 0.131 3.869 4 N -0.605 5.605 5 C 0.281 3.719 6 C -0.544 4.544 7 H 0.053 0.947 8 C 0.011 3.989 9 N -0.926 5.926 10 Si 0.964 3.036 11 H -0.260 1.260 12 H -0.279 1.279 13 H -0.280 1.280 14 C 0.695 3.305 15 O -0.612 6.612 16 N -0.673 5.673 17 C 0.207 3.793 18 C -0.165 4.165 19 C -0.033 4.033 20 C -0.176 4.176 21 C 0.535 3.465 22 O -0.533 6.533 23 O -0.510 6.510 24 C 0.001 3.999 25 C -0.115 4.115 26 C -0.160 4.160 27 H 0.101 0.899 28 H 0.116 0.884 29 H 0.112 0.888 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.027 0.973 33 H 0.000 1.000 34 H 0.267 0.733 35 H 0.422 0.578 36 H 0.122 0.878 37 H 0.149 0.851 38 H 0.432 0.568 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.266 -10.182 -16.661 20.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.208 4.208 3 C 0.009 3.991 4 N -0.338 5.338 5 C 0.160 3.840 6 C -0.582 4.582 7 H 0.071 0.929 8 C -0.188 4.188 9 N -0.566 5.566 10 Si 0.788 3.212 11 H -0.184 1.184 12 H -0.204 1.204 13 H -0.206 1.206 14 C 0.397 3.603 15 O -0.491 6.491 16 N -0.323 5.323 17 C 0.110 3.890 18 C -0.185 4.185 19 C -0.052 4.052 20 C -0.179 4.179 21 C 0.382 3.618 22 O -0.426 6.426 23 O -0.324 6.324 24 C 0.000 4.000 25 C -0.171 4.171 26 C -0.181 4.181 27 H 0.119 0.881 28 H 0.134 0.866 29 H 0.130 0.870 30 H 0.103 0.897 31 H 0.119 0.881 32 H 0.045 0.955 33 H 0.019 0.981 34 H 0.076 0.924 35 H 0.263 0.737 36 H 0.140 0.860 37 H 0.167 0.833 38 H 0.294 0.706 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 7.355 -9.937 -15.970 20.196 hybrid contribution 0.258 0.644 0.475 0.841 sum 7.612 -9.293 -15.495 19.606 Atomic orbital electron populations 1.24068 0.95505 1.02984 0.97563 1.23315 0.96925 0.98040 1.02533 1.20824 0.92839 0.96817 0.88579 1.47430 1.09723 1.62497 1.14100 1.18653 0.93951 0.92391 0.79022 1.21689 1.40645 0.94529 1.01377 0.92883 1.25785 0.94683 1.03465 0.94869 1.70036 1.42744 1.38092 1.05724 0.85527 0.78367 0.79383 0.77883 1.18435 1.20410 1.20611 1.16088 0.82836 0.78496 0.82867 1.90880 1.53969 1.63460 1.40833 1.42587 1.09928 1.65739 1.14070 1.18024 0.83870 0.92194 0.94957 1.21274 0.96063 1.01198 1.00011 1.21355 0.93262 0.94499 0.96074 1.19001 0.91845 1.10730 0.96278 1.20661 0.86616 0.73074 0.81447 1.90828 1.72745 1.52558 1.26473 1.84558 1.31815 1.76347 1.39646 1.19980 0.92570 0.91900 0.95552 1.21079 1.01273 1.03147 0.91604 1.20910 0.94480 1.05408 0.97256 0.88084 0.86602 0.86997 0.89710 0.88056 0.95462 0.98149 0.92406 0.73696 0.85979 0.83338 0.70607 0.89774 0.89874 0.90244 0.81808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.57 14.32 67.78 0.97 -2.60 16 2 C -0.19 -4.63 9.85 25.64 0.25 -4.38 16 3 C 0.13 3.80 5.57 85.63 0.48 4.28 16 4 N -0.60 -24.68 2.44 -848.57 -2.07 -26.75 16 5 C 0.28 14.76 5.16 85.63 0.44 15.21 16 6 C -0.54 -30.72 9.39 25.60 0.24 -30.48 16 7 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 8 C 0.01 0.64 5.46 84.66 0.46 1.10 16 9 N -0.93 -55.23 13.29 21.45 0.28 -54.95 16 10 Si 0.96 44.45 29.54 68.60 2.03 46.47 16 11 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 12 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 13 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 14 C 0.70 28.52 8.11 179.05 1.45 29.98 16 15 O -0.61 -31.17 13.38 -3.98 -0.05 -31.23 16 16 N -0.67 -19.77 5.15 -317.16 -1.63 -21.40 16 17 C 0.21 5.95 6.28 38.38 0.24 6.19 16 18 C -0.16 -5.23 8.66 22.35 0.19 -5.04 16 19 C -0.03 -0.88 9.60 22.51 0.22 -0.67 16 20 C -0.18 -4.38 5.88 -20.09 -0.12 -4.50 16 21 C 0.54 12.11 8.19 70.25 0.58 12.69 16 22 O -0.53 -13.41 14.13 19.82 0.28 -13.13 16 23 O -0.51 -8.64 12.69 -56.61 -0.72 -9.36 16 24 C 0.00 0.03 5.91 -19.62 -0.12 -0.09 16 25 C -0.12 -2.13 8.71 71.24 0.62 -1.51 16 26 C -0.16 -3.58 9.57 22.35 0.21 -3.36 16 27 H 0.10 2.20 7.84 -2.91 -0.02 2.17 16 28 H 0.12 2.07 8.06 -2.91 -0.02 2.04 16 29 H 0.11 2.59 8.06 -2.91 -0.02 2.57 16 30 H 0.08 2.60 7.72 -2.39 -0.02 2.58 16 31 H 0.10 2.19 6.44 -2.38 -0.02 2.17 16 32 H 0.03 1.46 8.07 -2.39 -0.02 1.44 16 33 H 0.00 0.02 7.42 -2.38 -0.02 0.01 16 34 H 0.27 15.00 8.31 -92.70 -0.77 14.23 16 35 H 0.42 9.00 6.62 -92.71 -0.61 8.39 16 36 H 0.12 4.60 6.26 -2.91 -0.02 4.58 16 37 H 0.15 3.50 7.62 -2.91 -0.02 3.47 16 38 H 0.43 2.99 9.11 -74.05 -0.67 2.31 16 39 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.08 1.18 8.03 -2.39 -0.02 1.16 16 41 H 0.08 1.72 5.88 -2.39 -0.01 1.71 16 42 H 0.16 2.58 8.05 -2.91 -0.02 2.55 16 Total: -1.00 -76.40 362.03 4.02 -72.37 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: -0.22 Total: 21.17 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: 6.12 Total: 16.80 kcal Atomic # 7 Polarization: -99.68 SS G_CDS: -3.42 Total: -103.10 kcal Atomic # 8 Polarization: -53.23 SS G_CDS: -0.49 Total: -53.72 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -76.40 4.02 -72.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602722856.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.281 kcal (2) G-P(sol) polarization free energy of solvation -76.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds