Wall clock time and date at job start Tue Mar 31 2020 13:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50698 * 119.99971 * 2 1 4 4 N 1.46507 * 109.47291 * 125.00065 * 3 2 1 5 5 C 1.46494 * 120.00159 * 270.00773 * 4 3 2 6 6 C 1.50708 * 109.46758 * 269.99627 * 5 4 3 7 7 H 1.07997 * 119.99957 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99830 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00077 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99981 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46999 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47532 * 119.99545 * 10 8 6 13 13 H 1.48503 * 109.46684 * 239.99891 * 10 8 6 14 14 C 1.34773 * 119.99652 * 90.00051 * 4 3 2 15 15 O 1.21585 * 120.00027 * 180.02562 * 14 4 3 16 16 N 1.34775 * 120.00282 * 0.02562 * 14 4 3 17 17 C 1.39976 * 120.00395 * 184.48371 * 16 14 4 18 18 C 1.38620 * 119.99335 * 325.25322 * 17 16 14 19 19 C 1.39513 * 119.77141 * 179.97438 * 18 17 16 20 20 C 1.47747 * 120.11714 * 180.02562 * 19 18 17 21 21 O 1.21468 * 119.99530 * 359.97438 * 20 19 18 22 22 O 1.34706 * 119.99843 * 179.97438 * 20 19 18 23 23 C 1.39662 * 119.76892 * 0.02562 * 19 18 17 24 24 C 1.37973 * 119.99068 * 0.24986 * 23 19 18 25 25 C 1.38263 * 120.22161 * 359.51248 * 24 23 19 26 26 C 1.50705 * 119.87916 * 180.21172 * 25 24 23 27 27 H 1.08002 * 120.00003 * 179.97438 * 1 2 3 28 28 H 1.08001 * 120.00243 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.00243 * 180.02562 * 2 1 3 30 30 H 1.09010 * 109.47337 * 5.00496 * 3 2 1 31 31 H 1.08996 * 109.47506 * 245.00529 * 3 2 1 32 32 H 1.09001 * 109.47610 * 29.99304 * 5 4 3 33 33 H 1.08994 * 109.47582 * 149.99674 * 5 4 3 34 34 H 0.96996 * 119.99891 * 180.02562 * 9 8 6 35 35 H 0.97002 * 120.00257 * 4.48308 * 16 14 4 36 36 H 1.08001 * 120.11532 * 0.02562 * 18 17 16 37 37 H 0.96705 * 116.99757 * 180.02562 * 22 20 19 38 38 H 1.07997 * 120.00682 * 179.97438 * 23 19 18 39 39 H 1.07997 * 119.88761 * 179.72468 * 24 23 19 40 40 H 1.09005 * 109.47096 * 270.25293 * 26 25 24 41 41 H 1.08998 * 109.47247 * 30.25618 * 26 25 24 42 42 H 1.08998 * 109.46823 * 150.25391 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.5589 1.8648 2.4249 6 6 2.8442 3.3436 2.4805 7 1 3.3032 3.8370 1.6366 8 6 2.5193 4.0664 3.6088 9 7 1.9600 3.4655 4.6362 10 14 2.8723 5.8994 3.6775 11 1 3.5002 6.3307 2.4027 12 1 1.6018 6.6411 3.8797 13 1 3.7963 6.1836 4.8048 14 6 4.2496 0.8662 0.9823 15 8 5.0216 0.8880 1.9214 16 7 4.6499 0.3763 -0.2077 17 6 5.9219 -0.1931 -0.3382 18 6 6.9880 0.3195 0.3844 19 6 8.2538 -0.2520 0.2512 20 6 9.3954 0.2879 1.0181 21 8 9.2328 1.2312 1.7659 22 8 10.6164 -0.2660 0.8880 23 6 8.4380 -1.3362 -0.6097 24 6 7.3712 -1.8350 -1.3286 25 6 6.1160 -1.2715 -1.1926 26 6 4.9552 -1.8256 -1.9780 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3585 2.1317 0.0897 31 1 2.6211 1.4027 -0.9314 32 1 1.4887 1.6965 2.5460 33 1 3.0989 1.3602 3.2259 34 1 1.7311 3.9741 5.4298 35 1 4.0565 0.4183 -0.9739 36 1 6.8392 1.1578 1.0488 37 1 11.3321 0.1213 1.4104 38 1 9.4162 -1.7812 -0.7161 39 1 7.5165 -2.6707 -1.9972 40 1 4.8870 -1.3117 -2.9369 41 1 5.1067 -2.8917 -2.1470 42 1 4.0324 -1.6741 -1.4181 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602890753.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:58 Heat of formation + Delta-G solvation = -62.510598 kcal Electronic energy + Delta-G solvation = -26520.722181 eV Core-core repulsion = 22659.832792 eV Total energy + Delta-G solvation = -3860.889389 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.72986 -39.90910 -38.50854 -36.04700 -35.87473 -34.63969 -33.21020 -32.68439 -32.14367 -29.74441 -27.90322 -27.32464 -25.56041 -23.79260 -23.22495 -22.11608 -20.85598 -20.14921 -19.38255 -18.30486 -17.74551 -17.19863 -16.51734 -16.08693 -15.58816 -15.41009 -15.22936 -14.93568 -14.79132 -14.43502 -13.95646 -13.79748 -13.76408 -13.33874 -13.22711 -12.80423 -12.50953 -12.33662 -12.10529 -11.85457 -11.76419 -11.50511 -11.41309 -11.32025 -11.12548 -10.88278 -10.61138 -10.56805 -10.21342 -10.13971 -9.65520 -9.32311 -9.27540 -8.83816 -8.42552 -8.10773 -7.67557 -6.03470 -4.08080 0.68677 1.38660 2.34132 2.55162 2.93161 3.21857 3.31504 3.39915 3.43993 3.62292 3.94286 4.34967 4.50377 4.69343 4.74279 5.00161 5.09325 5.11501 5.27949 5.30751 5.31494 5.40439 5.42394 5.48764 5.59074 5.82565 5.89985 5.93755 6.07856 6.21697 6.30325 6.39078 6.48117 6.56884 6.69414 6.73899 6.86960 7.08591 7.33235 7.47470 7.62219 7.93238 7.93850 8.22667 8.49766 8.92264 9.16925 9.57318 11.04561 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010631 B = 0.004458 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.229330 B = 6278.775007 C = 8541.398414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.173 4.173 3 C 0.136 3.864 4 N -0.601 5.601 5 C 0.261 3.739 6 C -0.527 4.527 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.282 1.282 14 C 0.696 3.304 15 O -0.562 6.562 16 N -0.693 5.693 17 C 0.168 3.832 18 C -0.053 4.053 19 C -0.117 4.117 20 C 0.524 3.476 21 O -0.501 6.501 22 O -0.516 6.516 23 C -0.085 4.085 24 C -0.118 4.118 25 C -0.087 4.087 26 C -0.118 4.118 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.035 0.965 33 H 0.045 0.955 34 H 0.263 0.737 35 H 0.403 0.597 36 H 0.162 0.838 37 H 0.412 0.588 38 H 0.135 0.865 39 H 0.131 0.869 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.847 -12.303 -16.392 21.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.192 4.192 3 C 0.012 3.988 4 N -0.334 5.334 5 C 0.142 3.858 6 C -0.566 4.566 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.725 3.275 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.208 1.208 14 C 0.398 3.602 15 O -0.437 6.437 16 N -0.344 5.344 17 C 0.072 3.928 18 C -0.074 4.074 19 C -0.119 4.119 20 C 0.368 3.632 21 O -0.389 6.389 22 O -0.328 6.328 23 C -0.104 4.104 24 C -0.136 4.136 25 C -0.091 4.091 26 C -0.174 4.174 27 H 0.113 0.887 28 H 0.118 0.882 29 H 0.122 0.878 30 H 0.111 0.889 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.241 0.759 36 H 0.180 0.820 37 H 0.270 0.730 38 H 0.153 0.847 39 H 0.149 0.851 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.849 -12.081 -15.445 20.770 hybrid contribution 0.276 1.265 0.183 1.308 sum 7.124 -10.815 -15.262 20.017 Atomic orbital electron populations 1.23833 0.95796 1.01873 0.99975 1.23426 0.96508 0.98869 1.00423 1.20545 0.93222 0.95806 0.89194 1.47596 1.08644 1.62927 1.14269 1.19264 0.95291 0.93667 0.77556 1.21480 1.40512 0.93306 1.01308 0.92384 1.24915 0.95016 0.98763 0.95288 1.69939 1.42087 1.36090 1.05165 0.86450 0.77849 0.84953 0.78213 1.19819 1.21005 1.20837 1.15983 0.83362 0.78724 0.82115 1.90930 1.52489 1.61039 1.39245 1.42971 1.15248 1.63721 1.12436 1.17164 0.84585 0.93104 0.97989 1.21613 0.88772 0.99501 0.97468 1.18836 0.91390 1.00117 1.01533 1.20917 0.82384 0.80273 0.79670 1.90957 1.84594 1.27102 1.36282 1.84535 1.19558 1.61335 1.67419 1.21293 0.99584 0.94875 0.94677 1.20734 0.91386 1.00813 1.00710 1.19947 0.96218 0.93757 0.99145 1.20801 0.95968 1.01373 0.99302 0.88700 0.88175 0.87810 0.88893 0.91622 0.94677 0.93659 0.92762 0.75926 0.82039 0.73011 0.84713 0.85072 0.90778 0.90864 0.91289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.13 14.32 29.02 0.42 -1.72 16 2 C -0.17 -2.29 9.85 -36.03 -0.35 -2.64 16 3 C 0.14 2.10 5.65 -5.19 -0.03 2.07 16 4 N -0.60 -12.46 2.44 -182.18 -0.44 -12.91 16 5 C 0.26 6.78 5.16 -5.19 -0.03 6.76 16 6 C -0.53 -14.92 9.39 -34.44 -0.32 -15.25 16 7 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 8 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 10 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 11 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 14 C 0.70 14.63 8.12 -86.92 -0.71 13.92 16 15 O -0.56 -14.42 13.33 5.29 0.07 -14.34 16 16 N -0.69 -10.90 4.62 -14.26 -0.07 -10.96 16 17 C 0.17 2.57 6.28 -83.73 -0.53 2.04 16 18 C -0.05 -0.93 8.24 -38.97 -0.32 -1.25 16 19 C -0.12 -1.74 5.87 -105.00 -0.62 -2.36 16 20 C 0.52 7.88 8.27 34.62 0.29 8.16 16 21 O -0.50 -9.60 17.13 -19.24 -0.33 -9.92 16 22 O -0.52 -5.40 12.68 -40.51 -0.51 -5.91 16 23 C -0.09 -0.97 9.61 -39.15 -0.38 -1.35 16 24 C -0.12 -1.20 9.67 -39.67 -0.38 -1.58 16 25 C -0.09 -1.01 5.90 -104.35 -0.62 -1.62 16 26 C -0.12 -0.97 9.46 36.01 0.34 -0.63 16 27 H 0.09 0.98 8.06 -52.49 -0.42 0.56 16 28 H 0.10 1.19 7.84 -52.49 -0.41 0.78 16 29 H 0.10 1.30 8.06 -52.49 -0.42 0.88 16 30 H 0.09 1.49 7.72 -51.92 -0.40 1.09 16 31 H 0.07 0.81 6.30 -51.93 -0.33 0.48 16 32 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 33 H 0.05 1.34 7.42 -51.93 -0.39 0.96 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.40 4.97 5.53 -40.82 -0.23 4.74 16 36 H 0.16 3.51 5.78 -52.49 -0.30 3.20 16 37 H 0.41 2.47 9.11 45.56 0.42 2.88 16 38 H 0.13 1.23 7.61 -52.49 -0.40 0.83 16 39 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 42 H 0.07 0.60 7.15 -51.93 -0.37 0.23 16 LS Contribution 364.66 15.07 5.50 5.50 Total: -1.00 -36.44 364.66 -7.89 -44.33 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -4.48 Total: 6.76 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: -3.33 Total: 6.26 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: 0.23 Total: -49.80 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -0.77 Total: -30.18 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.44 -7.89 -44.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602890753.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.180 kcal (2) G-P(sol) polarization free energy of solvation -36.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds