Wall clock time and date at job start Tue Mar 31 2020 13:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.46926 * 2 1 4 4 C 1.37656 * 119.96318 * 264.72984 * 3 2 1 5 5 C 1.39793 * 119.92424 * 179.75403 * 4 3 2 6 6 C 1.47439 * 120.08285 * 180.22789 * 5 4 3 7 7 O 1.21508 * 120.00152 * 0.28554 * 6 5 4 8 8 O 1.34757 * 120.00387 * 180.29233 * 6 5 4 9 9 C 1.39842 * 119.83933 * 0.51538 * 5 4 3 10 10 C 1.37610 * 119.92046 * 359.73079 * 9 5 4 11 11 C 1.39135 * 119.96141 * 84.99464 * 3 2 1 12 12 N 1.39406 * 119.91893 * 0.02804 * 11 3 2 13 13 C 1.34784 * 119.99760 * 145.15587 * 12 11 3 14 14 O 1.21575 * 120.00001 * 4.54281 * 13 12 11 15 15 N 1.34772 * 119.99664 * 184.53406 * 13 12 11 16 16 C 1.47070 * 136.05688 * 359.64243 * 15 13 12 17 17 C 1.53759 * 87.88639 * 152.95772 * 16 15 13 18 18 C 1.50700 * 114.27013 * 139.79132 * 17 16 15 19 19 H 1.07997 * 120.00045 * 266.47438 * 18 17 16 20 20 C 1.37882 * 119.99990 * 86.46646 * 18 17 16 21 21 N 1.31512 * 119.99694 * 180.02562 * 20 18 17 22 22 Si 1.86792 * 120.00079 * 0.02562 * 20 18 17 23 23 H 1.48507 * 109.47292 * 89.99410 * 22 20 18 24 24 H 1.48500 * 109.47373 * 209.99397 * 22 20 18 25 25 H 1.48506 * 109.47473 * 329.99726 * 22 20 18 26 26 C 1.47069 * 136.05867 * 179.97438 * 15 13 12 27 27 H 1.09000 * 109.46526 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47480 * 299.99865 * 1 2 3 29 29 H 1.08995 * 109.46965 * 60.00427 * 1 2 3 30 30 H 1.08998 * 109.47402 * 119.99840 * 2 1 3 31 31 H 1.08998 * 109.47480 * 240.00135 * 2 1 3 32 32 H 1.08006 * 120.03502 * 359.97438 * 4 3 2 33 33 H 0.96697 * 117.00172 * 179.97438 * 8 6 5 34 34 H 1.08002 * 120.04126 * 179.71408 * 9 5 4 35 35 H 1.08001 * 119.96569 * 180.02562 * 10 9 5 36 36 H 0.96993 * 119.99714 * 325.15645 * 12 11 3 37 37 H 1.08999 * 113.46471 * 267.68644 * 16 15 13 38 38 H 1.08999 * 113.46857 * 38.12618 * 16 15 13 39 39 H 1.09003 * 114.39059 * 272.67249 * 17 16 15 40 40 H 0.97003 * 120.00154 * 180.02562 * 21 20 18 41 41 H 1.09004 * 113.46496 * 321.87456 * 26 15 13 42 42 H 1.09000 * 113.46282 * 92.24830 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3647 2.0325 -1.1875 5 6 2.8257 3.3523 -1.1871 6 6 3.1780 4.0125 -2.4574 7 8 3.0628 3.4112 -3.5070 8 8 3.6277 5.2828 -2.4546 9 6 2.9576 4.0428 0.0218 10 6 2.6283 3.4233 1.2056 11 6 2.1647 2.1110 1.2008 12 7 1.8329 1.4863 2.4021 13 6 2.5355 1.7585 3.5197 14 8 3.4041 2.6090 3.4997 15 7 2.2749 1.0880 4.6594 16 6 1.3378 0.0346 5.0776 17 6 2.3649 -0.3759 6.1457 18 6 1.7613 -0.7422 7.4771 19 1 1.6661 0.0052 8.2508 20 6 1.3303 -2.0316 7.7073 21 7 0.8031 -2.3511 8.8690 22 14 1.4954 -3.3245 6.3692 23 1 2.8090 -4.0051 6.4978 24 1 0.4049 -4.3228 6.5083 25 1 1.4036 -2.6734 5.0376 26 6 2.7986 1.0919 6.0337 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 2.2661 1.4946 -2.1189 33 1 3.8463 5.6730 -3.3119 34 1 3.3178 5.0610 0.0263 35 1 2.7295 3.9561 2.1396 36 1 1.0965 0.8559 2.4336 37 1 0.4083 0.4213 5.4953 38 1 1.1733 -0.7275 4.3159 39 1 3.1124 -1.0902 5.8004 40 1 0.5003 -3.2583 9.0311 41 1 3.8785 1.2306 6.0863 42 1 2.2552 1.7585 6.7033 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605792237.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:34 Heat of formation + Delta-G solvation = -77.101298 kcal Electronic energy + Delta-G solvation = -26058.934757 eV Core-core repulsion = 22197.412668 eV Total energy + Delta-G solvation = -3861.522089 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.11729 -41.29042 -40.31525 -38.88166 -37.08957 -36.09756 -34.90474 -34.66048 -32.05197 -30.80394 -30.23191 -27.30974 -26.78702 -25.36032 -24.89556 -23.22780 -22.21307 -21.55745 -20.61189 -19.47009 -19.06974 -18.75080 -18.49381 -18.09290 -17.02496 -16.75148 -16.64858 -16.32380 -15.84865 -15.68415 -15.19498 -14.96334 -14.85660 -14.71783 -14.40420 -14.27894 -14.23046 -13.61879 -13.47048 -13.44017 -12.99813 -12.81766 -12.64647 -12.58836 -12.48754 -12.14598 -11.94333 -11.86954 -11.79897 -11.63855 -11.45365 -11.21651 -11.04791 -10.65520 -9.94085 -9.78492 -9.20888 -8.25580 -6.33613 -0.44887 0.28165 1.25378 1.42945 1.44280 1.47574 1.55906 1.96774 2.07864 2.40528 2.69234 2.72395 3.06170 3.61856 3.73579 3.96562 4.03571 4.08118 4.12988 4.22087 4.29245 4.41480 4.43340 4.50226 4.55632 4.63968 4.68099 4.79618 4.83155 4.94163 5.01949 5.04393 5.09662 5.21473 5.28042 5.35366 5.38337 5.40774 5.56750 5.61268 5.81521 6.04286 6.30270 6.73854 6.88384 6.97050 7.30986 7.35051 8.89693 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023544 B = 0.002916 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.969264 B = 9599.871458 C =10510.305513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 C -0.122 4.122 4 C -0.030 4.030 5 C -0.163 4.163 6 C 0.539 3.461 7 O -0.548 6.548 8 O -0.505 6.505 9 C -0.038 4.038 10 C -0.151 4.151 11 C 0.201 3.799 12 N -0.671 5.671 13 C 0.725 3.275 14 O -0.611 6.611 15 N -0.659 5.659 16 C 0.095 3.905 17 C -0.012 4.012 18 C -0.512 4.512 19 H 0.042 0.958 20 C 0.019 3.981 21 N -0.944 5.944 22 Si 0.940 3.060 23 H -0.277 1.277 24 H -0.290 1.290 25 H -0.226 1.226 26 C 0.138 3.862 27 H 0.075 0.925 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.151 0.849 33 H 0.433 0.567 34 H 0.155 0.845 35 H 0.133 0.867 36 H 0.419 0.581 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.267 0.733 41 H 0.067 0.933 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.122 8.122 -22.744 24.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.122 4.122 3 C -0.125 4.125 4 C -0.048 4.048 5 C -0.165 4.165 6 C 0.386 3.614 7 O -0.441 6.441 8 O -0.319 6.319 9 C -0.056 4.056 10 C -0.172 4.172 11 C 0.104 3.896 12 N -0.318 5.318 13 C 0.429 3.571 14 O -0.491 6.491 15 N -0.395 5.395 16 C -0.027 4.027 17 C -0.031 4.031 18 C -0.550 4.550 19 H 0.061 0.939 20 C -0.179 4.179 21 N -0.582 5.582 22 Si 0.764 3.236 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.149 1.149 26 C 0.015 3.985 27 H 0.094 0.906 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.112 0.888 32 H 0.169 0.831 33 H 0.295 0.705 34 H 0.173 0.827 35 H 0.151 0.849 36 H 0.257 0.743 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.579 8.357 -22.650 24.149 hybrid contribution -0.203 -0.549 -0.197 0.618 sum 0.376 7.808 -22.846 24.147 Atomic orbital electron populations 1.21794 0.93465 1.03057 1.02248 1.20569 0.97086 0.90453 1.04140 1.19742 1.04398 0.97667 0.90662 1.21030 0.93283 0.92416 0.98117 1.19084 1.10543 0.95935 0.90983 1.20703 0.72381 0.79764 0.88578 1.90875 1.52575 1.66137 1.34497 1.84538 1.76979 1.27491 1.42891 1.21403 0.93947 1.00451 0.89833 1.21313 1.02771 0.93529 0.99547 1.17855 0.96095 0.91191 0.84445 1.42433 1.35761 1.47534 1.06098 1.15390 0.81572 0.80338 0.79757 1.90863 1.37334 1.36496 1.84455 1.48986 1.41008 1.40882 1.08670 1.23805 0.95029 0.87421 0.96446 1.20691 0.95124 0.93259 0.94056 1.20905 1.40021 0.95986 0.98071 0.93949 1.25881 0.93814 1.00754 0.97469 1.70042 1.42410 1.20602 1.25189 0.85858 0.77666 0.78682 0.81391 1.20308 1.21648 1.14883 1.22938 0.99293 0.97827 0.78447 0.90606 0.93199 0.91777 0.91257 0.88752 0.83137 0.70463 0.82748 0.84931 0.74255 0.89352 0.90120 0.91497 0.92381 0.91447 0.90170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.82 71.98 0.71 -1.31 16 2 C -0.09 -1.37 5.46 29.85 0.16 -1.20 16 3 C -0.12 -2.51 5.14 -19.79 -0.10 -2.61 16 4 C -0.03 -0.60 9.21 22.51 0.21 -0.39 16 5 C -0.16 -3.46 5.87 -20.09 -0.12 -3.58 16 6 C 0.54 10.85 8.26 70.25 0.58 11.43 16 7 O -0.55 -13.67 17.12 19.81 0.34 -13.33 16 8 O -0.51 -6.90 12.67 -56.68 -0.72 -7.61 16 9 C -0.04 -0.81 9.60 22.51 0.22 -0.60 16 10 C -0.15 -3.95 8.66 22.35 0.19 -3.76 16 11 C 0.20 5.06 6.29 38.38 0.24 5.30 16 12 N -0.67 -17.66 4.76 -317.16 -1.51 -19.17 16 13 C 0.73 24.48 8.63 179.05 1.55 26.02 16 14 O -0.61 -24.15 14.51 -3.95 -0.06 -24.21 16 15 N -0.66 -22.34 3.69 -876.01 -3.23 -25.57 16 16 C 0.10 3.14 7.31 83.27 0.61 3.75 16 17 C -0.01 -0.46 2.96 -11.13 -0.03 -0.49 16 18 C -0.51 -25.46 9.39 25.60 0.24 -25.22 16 19 H 0.04 2.37 8.06 -2.91 -0.02 2.35 16 20 C 0.02 1.00 5.47 84.66 0.46 1.47 16 21 N -0.94 -54.00 13.96 21.45 0.30 -53.70 16 22 Si 0.94 38.23 27.15 68.60 1.86 40.09 16 23 H -0.28 -11.33 7.11 99.48 0.71 -10.63 16 24 H -0.29 -11.95 7.11 99.48 0.71 -11.24 16 25 H -0.23 -7.77 5.72 99.48 0.57 -7.20 16 26 C 0.14 5.02 8.17 83.17 0.68 5.70 16 27 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.05 0.71 7.27 -2.39 -0.02 0.70 16 29 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 1.21 7.42 -2.39 -0.02 1.19 16 31 H 0.09 1.25 8.05 -2.39 -0.02 1.23 16 32 H 0.15 2.69 7.64 -2.91 -0.02 2.66 16 33 H 0.43 1.80 9.11 -74.06 -0.67 1.12 16 34 H 0.15 2.76 7.60 -2.91 -0.02 2.73 16 35 H 0.13 4.01 6.18 -2.91 -0.02 3.99 16 36 H 0.42 9.11 6.72 -92.71 -0.62 8.49 16 37 H 0.09 2.91 8.10 -2.39 -0.02 2.89 16 38 H 0.08 2.30 7.15 -2.39 -0.02 2.28 16 39 H 0.07 2.61 7.03 -2.39 -0.02 2.59 16 40 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 41 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 42 H 0.08 2.93 8.10 -2.39 -0.02 2.91 16 Total: -1.00 -67.53 355.23 2.22 -65.31 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: -0.36 Total: 23.70 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: 5.59 Total: 14.50 kcal Atomic # 7 Polarization: -94.00 SS G_CDS: -4.44 Total: -98.44 kcal Atomic # 8 Polarization: -44.72 SS G_CDS: -0.44 Total: -45.16 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 1.86 Total: 40.09 kcal Total: -67.53 2.22 -65.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605792237.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.792 kcal (2) G-P(sol) polarization free energy of solvation -67.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds