Wall clock time and date at job start Tue Mar 31 2020 13:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.37660 * 119.96205 * 2 1 4 4 C 1.39801 * 119.92206 * 180.29169 * 3 2 1 5 5 C 1.47445 * 120.07966 * 179.74395 * 4 3 2 6 6 O 1.21512 * 119.99973 * 359.97438 * 5 4 3 7 7 O 1.34754 * 120.00020 * 179.97438 * 5 4 3 8 8 C 1.39830 * 119.83855 * 359.72467 * 4 3 2 9 9 C 1.37616 * 119.92294 * 359.97438 * 8 4 3 10 10 C 1.39133 * 119.96302 * 179.74454 * 2 1 3 11 11 N 1.39399 * 119.91860 * 359.97438 * 10 2 1 12 12 C 1.34774 * 120.00140 * 146.79381 * 11 10 2 13 13 O 1.21584 * 119.99937 * 4.67175 * 12 11 10 14 14 N 1.34783 * 119.99942 * 184.67908 * 12 11 10 15 15 C 1.46503 * 119.99340 * 179.72168 * 14 12 11 16 16 C 1.53003 * 109.46538 * 175.62635 * 15 14 12 17 17 C 1.50702 * 115.55042 * 56.70354 * 16 15 14 18 18 H 1.08002 * 119.99921 * 267.45701 * 17 16 15 19 19 C 1.37872 * 120.00218 * 87.45032 * 17 16 15 20 20 N 1.31517 * 120.00363 * 2.81710 * 19 17 16 21 21 Si 1.86810 * 120.00113 * 182.81493 * 19 17 16 22 22 H 1.48502 * 109.46643 * 60.00132 * 21 19 17 23 23 H 1.48493 * 109.46862 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46872 * 300.00309 * 21 19 17 25 25 C 1.53002 * 117.50122 * 271.02936 * 16 15 14 26 26 C 1.53004 * 117.49908 * 202.36647 * 16 15 14 27 27 H 1.08997 * 109.47490 * 270.25453 * 1 2 3 28 28 H 1.09007 * 109.47296 * 30.25642 * 1 2 3 29 29 H 1.09001 * 109.47492 * 150.25551 * 1 2 3 30 30 H 1.08005 * 120.03815 * 359.97438 * 3 2 1 31 31 H 0.96698 * 117.00112 * 180.02562 * 7 5 4 32 32 H 1.08000 * 120.03702 * 179.97438 * 8 4 3 33 33 H 1.08001 * 119.95939 * 179.97438 * 9 8 4 34 34 H 0.97007 * 119.99769 * 326.79123 * 11 10 2 35 35 H 0.96997 * 119.99988 * 359.97438 * 14 12 11 36 36 H 1.08998 * 109.47162 * 295.62297 * 15 14 12 37 37 H 1.08997 * 109.47121 * 55.63377 * 15 14 12 38 38 H 0.96991 * 120.00184 * 185.01014 * 20 19 17 39 39 H 1.08990 * 117.49703 * 0.02562 * 25 16 15 40 40 H 1.08993 * 117.49766 * 145.02222 * 25 16 15 41 41 H 1.08999 * 117.50070 * 214.98201 * 26 16 15 42 42 H 1.08997 * 117.49558 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1944 1.1926 0.0000 4 6 3.5924 1.1917 -0.0062 5 6 4.3323 2.4670 -0.0119 6 8 3.7269 3.5206 -0.0117 7 8 5.6798 2.4642 -0.0173 8 6 4.2873 -0.0217 -0.0065 9 6 3.5935 -1.2102 -0.0002 10 6 2.2018 -1.2054 0.0054 11 7 1.5023 -2.4111 0.0113 12 6 2.0086 -3.4871 -0.6231 13 8 3.1134 -3.4311 -1.1277 14 7 1.2902 -4.6250 -0.6982 15 6 1.8382 -5.7925 -1.3931 16 6 0.8784 -6.9742 -1.2396 17 6 -0.5288 -6.7355 -1.7232 18 1 -1.2836 -6.3832 -1.0358 19 6 -0.8527 -6.9669 -3.0432 20 7 0.0518 -7.4484 -3.8677 21 14 -2.5764 -6.5965 -3.6608 22 1 -2.8727 -5.1545 -3.4661 23 1 -2.6671 -6.9305 -5.1049 24 1 -3.5596 -7.4108 -2.9021 25 6 1.0624 -7.8800 -0.0204 26 6 1.4559 -8.3804 -1.4125 27 1 -0.3634 0.0046 1.0276 28 1 -0.3634 0.8877 -0.5178 29 1 -0.3634 -0.8923 -0.5099 30 1 1.6544 2.1280 -0.0004 31 1 6.1206 3.3249 -0.0206 32 1 5.3673 -0.0262 -0.0117 33 1 4.1296 -2.1477 -0.0009 34 1 0.6511 -2.4758 0.4721 35 1 0.4090 -4.6697 -0.2954 36 1 1.9627 -5.5605 -2.4508 37 1 2.8051 -6.0515 -0.9615 38 1 -0.1531 -7.5429 -4.8110 39 1 1.8668 -7.6340 0.6726 40 1 0.1656 -8.3037 0.4317 41 1 0.8178 -9.1331 -1.8757 42 1 2.5194 -8.4638 -1.6361 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607596862.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:37 Heat of formation + Delta-G solvation = -92.007890 kcal Electronic energy + Delta-G solvation = -25779.131523 eV Core-core repulsion = 21916.963036 eV Total energy + Delta-G solvation = -3862.168487 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.95956 -41.15881 -39.70622 -38.48172 -37.07612 -35.93719 -35.07264 -33.94123 -33.69263 -31.20340 -28.25996 -27.87528 -27.14960 -25.29225 -23.33897 -22.92242 -22.19316 -21.59643 -21.19639 -19.55085 -18.93216 -18.73287 -18.12359 -17.78553 -16.86541 -16.63942 -16.58957 -16.26735 -16.00006 -15.57466 -15.25352 -15.14782 -14.67222 -14.56189 -14.42386 -14.27335 -13.79336 -13.55390 -13.46628 -13.06921 -12.92270 -12.84751 -12.77267 -12.58430 -12.39325 -12.35749 -11.99559 -11.79223 -11.55426 -11.37347 -11.11680 -10.95929 -10.40813 -10.12023 -9.90447 -9.82212 -9.14908 -8.08741 -6.22698 -0.39665 0.33322 1.41202 1.45234 1.46729 1.52572 1.57659 2.08414 2.11977 2.43769 2.75267 3.17194 3.22372 3.58012 3.75040 3.82090 4.09486 4.17126 4.24788 4.28707 4.40917 4.56527 4.67740 4.73493 4.74971 4.82104 4.92187 4.99450 5.04677 5.11787 5.19738 5.26151 5.31343 5.32275 5.40932 5.53409 5.57643 5.62218 5.72041 5.78198 5.88352 5.99288 6.37558 6.85247 6.98761 7.02911 7.46680 7.49010 8.98429 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019399 B = 0.002799 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.016782 B =10002.902163 C =10765.794880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.127 4.127 3 C -0.035 4.035 4 C -0.167 4.167 5 C 0.539 3.461 6 O -0.549 6.549 7 O -0.506 6.506 8 C -0.041 4.041 9 C -0.155 4.155 10 C 0.200 3.800 11 N -0.670 5.670 12 C 0.696 3.304 13 O -0.616 6.616 14 N -0.704 5.704 15 C 0.197 3.803 16 C 0.003 3.997 17 C -0.504 4.504 18 H 0.067 0.933 19 C 0.026 3.974 20 N -0.907 5.907 21 Si 0.947 3.053 22 H -0.269 1.269 23 H -0.296 1.296 24 H -0.271 1.271 25 C -0.179 4.179 26 C -0.153 4.153 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.151 0.849 31 H 0.433 0.567 32 H 0.152 0.848 33 H 0.135 0.865 34 H 0.425 0.575 35 H 0.411 0.589 36 H 0.027 0.973 37 H 0.044 0.956 38 H 0.258 0.742 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.063 0.937 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.699 15.778 10.925 19.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.130 4.130 3 C -0.053 4.053 4 C -0.169 4.169 5 C 0.386 3.614 6 O -0.442 6.442 7 O -0.319 6.319 8 C -0.060 4.060 9 C -0.175 4.175 10 C 0.103 3.897 11 N -0.317 5.317 12 C 0.397 3.603 13 O -0.496 6.496 14 N -0.357 5.357 15 C 0.073 3.927 16 C 0.002 3.998 17 C -0.541 4.541 18 H 0.085 0.915 19 C -0.175 4.175 20 N -0.544 5.544 21 Si 0.773 3.227 22 H -0.194 1.194 23 H -0.222 1.222 24 H -0.196 1.196 25 C -0.216 4.216 26 C -0.191 4.191 27 H 0.113 0.887 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.168 0.832 31 H 0.295 0.705 32 H 0.170 0.830 33 H 0.153 0.847 34 H 0.264 0.736 35 H 0.247 0.753 36 H 0.045 0.955 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.107 0.893 40 H 0.102 0.898 41 H 0.082 0.918 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.295 15.464 10.266 19.052 hybrid contribution -1.071 0.253 -0.607 1.257 sum 3.224 15.716 9.659 18.727 Atomic orbital electron populations 1.20827 0.88151 1.04032 1.04106 1.19781 0.97982 0.90155 1.05074 1.21047 0.91872 0.98319 0.94095 1.19090 0.93708 0.90749 1.13324 1.20739 0.80947 0.88770 0.70988 1.90869 1.70338 1.34416 1.48589 1.84543 1.19769 1.42516 1.85106 1.21395 1.01180 0.89987 0.93424 1.21399 0.93109 0.99687 1.03322 1.17860 0.91348 0.84656 0.95855 1.42411 1.25769 1.07964 1.55581 1.16117 0.84196 0.80747 0.79259 1.90859 1.21225 1.83549 1.53973 1.44950 1.21165 1.10807 1.58729 1.20476 0.94339 0.84015 0.93903 1.19075 0.94709 0.87851 0.98132 1.20636 0.93730 1.45087 0.94681 0.91494 1.25682 0.99962 0.94179 0.97658 1.70110 1.36042 1.44508 1.03764 0.85795 0.81161 0.78925 0.76806 1.19371 1.22172 1.19604 1.23043 1.01942 1.06104 0.90514 1.22371 0.98377 0.99409 0.98940 0.88721 0.89706 0.91501 0.83181 0.70518 0.83028 0.84700 0.73620 0.75300 0.95507 0.93781 0.93316 0.89314 0.89824 0.91800 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.71 9.45 71.23 0.67 -1.04 16 2 C -0.13 -2.66 5.89 -19.79 -0.12 -2.77 16 3 C -0.03 -0.73 9.23 22.51 0.21 -0.52 16 4 C -0.17 -3.76 5.87 -20.09 -0.12 -3.88 16 5 C 0.54 11.57 8.26 70.25 0.58 12.15 16 6 O -0.55 -14.37 17.12 19.80 0.34 -14.03 16 7 O -0.51 -7.60 12.67 -56.65 -0.72 -8.31 16 8 C -0.04 -0.95 9.60 22.51 0.22 -0.74 16 9 C -0.15 -4.24 8.68 22.35 0.19 -4.05 16 10 C 0.20 5.12 6.32 38.38 0.24 5.36 16 11 N -0.67 -17.00 4.77 -317.17 -1.51 -18.51 16 12 C 0.70 23.91 8.41 179.05 1.51 25.41 16 13 O -0.62 -25.61 13.61 -3.98 -0.05 -25.66 16 14 N -0.70 -24.70 5.43 -478.53 -2.60 -27.29 16 15 C 0.20 8.39 5.55 86.38 0.48 8.87 16 16 C 0.00 0.14 1.62 -52.92 -0.09 0.05 16 17 C -0.50 -24.18 8.20 25.60 0.21 -23.97 16 18 H 0.07 3.04 7.81 -2.91 -0.02 3.02 16 19 C 0.03 1.32 5.42 84.65 0.46 1.78 16 20 N -0.91 -49.63 12.54 21.45 0.27 -49.36 16 21 Si 0.95 40.44 29.54 68.60 2.03 42.47 16 22 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 23 H -0.30 -12.95 7.11 99.48 0.71 -12.25 16 24 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 25 C -0.18 -6.79 9.94 30.62 0.30 -6.48 16 26 C -0.15 -6.73 9.08 30.62 0.28 -6.46 16 27 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.08 1.10 8.09 -2.38 -0.02 1.08 16 29 H 0.07 1.07 7.13 -2.39 -0.02 1.05 16 30 H 0.15 2.81 7.64 -2.91 -0.02 2.78 16 31 H 0.43 2.33 9.11 -74.06 -0.67 1.65 16 32 H 0.15 2.98 7.60 -2.91 -0.02 2.96 16 33 H 0.14 4.28 6.03 -2.91 -0.02 4.27 16 34 H 0.42 7.82 7.77 -92.70 -0.72 7.10 16 35 H 0.41 12.69 8.05 -92.71 -0.75 11.95 16 36 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.04 1.83 8.10 -2.39 -0.02 1.81 16 38 H 0.26 13.77 8.32 -92.71 -0.77 13.00 16 39 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 40 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 41 H 0.06 3.11 8.10 -2.39 -0.02 3.09 16 42 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 Total: -1.00 -66.76 363.00 1.74 -65.02 By element: Atomic # 1 Polarization: 32.99 SS G_CDS: -1.05 Total: 31.94 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: 5.03 Total: 3.73 kcal Atomic # 7 Polarization: -91.32 SS G_CDS: -3.84 Total: -95.16 kcal Atomic # 8 Polarization: -47.57 SS G_CDS: -0.43 Total: -48.01 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Total: -66.76 1.74 -65.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607596862.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.983 kcal (2) G-P(sol) polarization free energy of solvation -66.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds