Wall clock time and date at job start Tue Mar 31 2020 13:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38261 * 119.88549 * 2 1 4 4 C 1.37966 * 120.22742 * 180.29392 * 3 2 1 5 5 C 1.39662 * 119.99032 * 359.72813 * 4 3 2 6 6 C 1.47745 * 120.11662 * 179.97438 * 5 4 3 7 7 O 1.21472 * 119.99870 * 180.02562 * 6 5 4 8 8 O 1.34710 * 120.00105 * 0.02562 * 6 5 4 9 9 C 1.39516 * 119.76810 * 359.97438 * 5 4 3 10 10 C 1.38620 * 119.77069 * 359.97438 * 9 5 4 11 11 N 1.39976 * 119.99338 * 179.97438 * 10 9 5 12 12 C 1.34774 * 120.00429 * 331.34167 * 11 10 9 13 13 O 1.21592 * 119.99850 * 4.42407 * 12 11 10 14 14 N 1.34777 * 120.00000 * 184.42655 * 12 11 10 15 15 C 1.46503 * 119.99718 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47032 * 184.72614 * 15 14 12 17 17 C 1.50698 * 115.54874 * 303.63065 * 16 15 14 18 18 H 1.08001 * 120.00301 * 99.32133 * 17 16 15 19 19 C 1.37877 * 120.00175 * 279.04352 * 17 16 15 20 20 N 1.31512 * 120.00015 * 355.36018 * 19 17 16 21 21 Si 1.86799 * 120.00095 * 175.36584 * 19 17 16 22 22 H 1.48495 * 109.47139 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47243 * 119.99821 * 21 19 17 24 24 H 1.48499 * 109.46877 * 239.99880 * 21 19 17 25 25 C 1.52996 * 117.51548 * 89.33329 * 16 15 14 26 26 C 1.52993 * 117.49782 * 157.96073 * 16 15 14 27 27 H 1.09004 * 109.47599 * 270.25212 * 1 2 3 28 28 H 1.08996 * 109.47240 * 30.25268 * 1 2 3 29 29 H 1.09005 * 109.47320 * 150.25505 * 1 2 3 30 30 H 1.08001 * 119.88575 * 0.02562 * 3 2 1 31 31 H 1.08003 * 120.00359 * 179.70280 * 4 3 2 32 32 H 0.96693 * 117.00299 * 180.02562 * 8 6 5 33 33 H 1.07999 * 120.11629 * 180.02562 * 9 5 4 34 34 H 0.97008 * 119.99968 * 151.33583 * 11 10 9 35 35 H 0.96993 * 120.00253 * 359.97438 * 14 12 11 36 36 H 1.09006 * 109.47220 * 64.72930 * 15 14 12 37 37 H 1.08996 * 109.47617 * 304.73040 * 15 14 12 38 38 H 0.96998 * 120.00540 * 185.00507 * 20 19 17 39 39 H 1.09005 * 117.49460 * 214.96764 * 25 16 15 40 40 H 1.09001 * 117.50263 * 359.97438 * 25 16 15 41 41 H 1.09003 * 117.50296 * 359.97438 * 26 16 15 42 42 H 1.09009 * 117.50291 * 144.97712 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1988 0.0000 4 6 3.5755 1.2070 -0.0061 5 6 4.2808 0.0016 -0.0066 6 6 5.7582 0.0071 -0.0137 7 8 6.3695 -1.0426 -0.0146 8 8 6.4274 1.1763 -0.0192 9 6 3.5854 -1.2079 -0.0003 10 6 2.1992 -1.2048 0.0069 11 7 1.4968 -2.4155 0.0126 12 6 2.0415 -3.5134 -0.5480 13 8 3.1747 -3.4733 -0.9870 14 7 1.3301 -4.6557 -0.6222 15 6 1.9221 -5.8490 -1.2322 16 6 0.8744 -6.9621 -1.2963 17 6 0.2470 -7.3408 0.0205 18 1 -0.7237 -6.9505 0.2883 19 6 0.9098 -8.1901 0.8810 20 7 2.0461 -8.7418 0.5149 21 14 0.1937 -8.5573 2.5668 22 1 -1.0833 -7.8181 2.7338 23 1 -0.0592 -10.0154 2.6904 24 1 1.1541 -8.1307 3.6161 25 6 -0.0070 -7.0321 -2.5449 26 6 1.0891 -8.0760 -2.3228 27 1 -0.3634 0.0045 1.0277 28 1 -0.3633 0.8877 -0.5177 29 1 -0.3634 -0.8923 -0.5099 30 1 1.6521 2.1319 0.0004 31 1 4.1099 2.1455 -0.0109 32 1 7.3932 1.1293 -0.0242 33 1 4.1251 -2.1433 -0.0002 34 1 0.6178 -2.4644 0.4203 35 1 0.4263 -4.6879 -0.2717 36 1 2.7692 -6.1815 -0.6322 37 1 2.2619 -5.6113 -2.2402 38 1 2.4755 -9.3948 1.0894 39 1 -1.0408 -7.3522 -2.4138 40 1 0.1590 -6.2848 -3.3208 41 1 1.9766 -8.0157 -2.9528 42 1 0.7770 -9.0830 -2.0456 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607743156.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:43 Heat of formation + Delta-G solvation = -69.356437 kcal Electronic energy + Delta-G solvation = -26076.169284 eV Core-core repulsion = 22214.983038 eV Total energy + Delta-G solvation = -3861.186246 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.81438 -39.96203 -38.54606 -36.80321 -36.13175 -34.68904 -33.48169 -32.78349 -32.03759 -29.77745 -27.88846 -26.25967 -25.22874 -23.65272 -22.75913 -21.22697 -20.95567 -20.45496 -19.48071 -18.31665 -18.01597 -17.52096 -16.41238 -15.89617 -15.68988 -15.49043 -15.17595 -14.91751 -14.70011 -14.28283 -14.11970 -13.92244 -13.77067 -13.40009 -13.13036 -12.75278 -12.58562 -12.34400 -11.97239 -11.82921 -11.64847 -11.60270 -11.54892 -11.05264 -11.00025 -10.66536 -10.56520 -10.40792 -10.26533 -9.71570 -9.48794 -9.07427 -8.93282 -8.59416 -8.44269 -8.20565 -7.90264 -6.12641 -4.23020 0.60346 1.30788 2.46260 2.79015 3.04040 3.21078 3.30529 3.31299 3.45565 3.81211 4.29956 4.58437 4.63878 4.67184 4.93508 5.02694 5.16019 5.21580 5.29860 5.36954 5.40190 5.51341 5.77178 5.86035 5.96961 6.12883 6.22825 6.28522 6.31226 6.39508 6.43562 6.46592 6.51720 6.66670 6.78506 6.96921 7.06991 7.17045 7.27504 7.34893 7.49875 7.76275 7.84503 8.28179 8.41859 8.78718 8.94744 9.44837 10.94765 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014810 B = 0.003186 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.168880 B = 8787.469740 C = 9145.617105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.088 4.088 3 C -0.116 4.116 4 C -0.086 4.086 5 C -0.117 4.117 6 C 0.525 3.475 7 O -0.503 6.503 8 O -0.516 6.516 9 C -0.063 4.063 10 C 0.168 3.832 11 N -0.687 5.687 12 C 0.693 3.307 13 O -0.581 6.581 14 N -0.708 5.708 15 C 0.179 3.821 16 C 0.026 3.974 17 C -0.503 4.503 18 H 0.061 0.939 19 C 0.075 3.925 20 N -0.871 5.871 21 Si 0.889 3.111 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.283 1.283 25 C -0.210 4.210 26 C -0.146 4.146 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.132 0.868 31 H 0.135 0.865 32 H 0.412 0.588 33 H 0.170 0.830 34 H 0.408 0.592 35 H 0.401 0.599 36 H 0.069 0.931 37 H 0.041 0.959 38 H 0.262 0.738 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.395 20.167 -0.174 20.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.092 4.092 3 C -0.135 4.135 4 C -0.106 4.106 5 C -0.119 4.119 6 C 0.369 3.631 7 O -0.392 6.392 8 O -0.328 6.328 9 C -0.083 4.083 10 C 0.071 3.929 11 N -0.335 5.335 12 C 0.393 3.607 13 O -0.459 6.459 14 N -0.360 5.360 15 C 0.056 3.944 16 C 0.025 3.975 17 C -0.541 4.541 18 H 0.079 0.921 19 C -0.130 4.130 20 N -0.507 5.507 21 Si 0.717 3.283 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.209 1.209 25 C -0.247 4.247 26 C -0.184 4.184 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.150 0.850 31 H 0.153 0.847 32 H 0.270 0.730 33 H 0.187 0.813 34 H 0.244 0.756 35 H 0.235 0.765 36 H 0.088 0.912 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.477 19.675 -0.523 19.687 hybrid contribution -0.476 -0.488 1.266 1.438 sum -0.953 19.187 0.743 19.225 Atomic orbital electron populations 1.20814 0.90557 1.03510 1.02720 1.19914 0.96470 0.91686 1.01114 1.20743 0.93669 0.97034 1.02004 1.21308 0.94155 0.97255 0.97864 1.18854 0.88833 0.94550 1.09641 1.20911 0.88924 0.80894 0.72391 1.90943 1.69841 1.33043 1.45336 1.84537 1.26739 1.35281 1.86231 1.21801 0.92846 0.99243 0.94448 1.17183 0.90618 0.84518 1.00557 1.42705 1.21981 1.07634 1.61141 1.16091 0.84911 0.80367 0.79284 1.90870 1.17312 1.83601 1.54109 1.45183 1.18293 1.09534 1.62959 1.20894 0.96463 0.81918 0.95124 1.19029 0.94873 0.93872 0.89727 1.20359 1.03572 1.30124 1.00027 0.92133 1.24991 0.94441 0.95524 0.98007 1.69983 1.16464 1.26850 1.37363 0.86588 0.79058 0.78145 0.84496 1.19726 1.20989 1.20941 1.23014 0.96302 1.03370 1.02042 1.22488 0.97482 0.95586 1.02875 0.90615 0.90780 0.91201 0.84994 0.84692 0.72968 0.81281 0.75625 0.76485 0.91233 0.94108 0.92819 0.90411 0.91645 0.91695 0.89650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 9.44 36.00 0.34 -0.57 16 2 C -0.09 -0.95 5.90 -104.35 -0.62 -1.56 16 3 C -0.12 -1.09 9.67 -39.67 -0.38 -1.48 16 4 C -0.09 -0.92 9.61 -39.15 -0.38 -1.29 16 5 C -0.12 -1.62 5.87 -105.00 -0.62 -2.24 16 6 C 0.52 7.31 8.27 34.62 0.29 7.60 16 7 O -0.50 -8.95 17.13 -19.24 -0.33 -9.28 16 8 O -0.52 -4.92 12.68 -40.52 -0.51 -5.43 16 9 C -0.06 -1.02 8.30 -38.96 -0.32 -1.34 16 10 C 0.17 2.37 6.38 -83.73 -0.53 1.83 16 11 N -0.69 -9.80 4.88 -14.25 -0.07 -9.87 16 12 C 0.69 12.95 8.44 -86.92 -0.73 12.22 16 13 O -0.58 -13.00 13.40 5.28 0.07 -12.93 16 14 N -0.71 -13.41 5.43 -65.22 -0.35 -13.76 16 15 C 0.18 3.99 5.55 -4.04 -0.02 3.97 16 16 C 0.03 0.59 1.52 -155.67 -0.24 0.35 16 17 C -0.50 -12.47 8.15 -34.44 -0.28 -12.75 16 18 H 0.06 1.47 7.82 -52.49 -0.41 1.05 16 19 C 0.08 1.94 5.44 -17.82 -0.10 1.84 16 20 N -0.87 -23.78 12.84 55.43 0.71 -23.07 16 21 Si 0.89 20.07 29.54 -169.99 -5.02 15.05 16 22 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 C -0.21 -4.27 9.93 -26.74 -0.27 -4.54 16 26 C -0.15 -3.28 9.41 -26.74 -0.25 -3.53 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 29 H 0.07 0.55 7.05 -51.93 -0.37 0.18 16 30 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 31 H 0.14 1.13 7.61 -52.48 -0.40 0.74 16 32 H 0.41 2.09 9.11 45.56 0.42 2.50 16 33 H 0.17 3.38 5.32 -52.49 -0.28 3.10 16 34 H 0.41 4.47 7.59 -40.82 -0.31 4.16 16 35 H 0.40 6.83 8.03 -40.82 -0.33 6.51 16 36 H 0.07 1.78 8.14 -51.93 -0.42 1.36 16 37 H 0.04 0.90 8.10 -51.93 -0.42 0.48 16 38 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 39 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 40 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 42 H 0.08 2.04 8.14 -51.92 -0.42 1.62 16 LS Contribution 363.06 15.07 5.47 5.47 Total: -1.00 -32.62 363.06 -8.76 -41.38 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -4.61 Total: 13.94 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -4.11 Total: -1.49 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: 0.29 Total: -46.70 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.77 Total: -27.64 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.62 -8.76 -41.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607743156.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.978 kcal (2) G-P(sol) polarization free energy of solvation -32.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds